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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr8 | genome | chr8:1185892..1188995 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G04130.3 vs.
Match: CBJ30106.1 (Similarities to Heat shock protein 70-probable alternative splicing [Ectocarpus siliculosus]) HSP 1 Score: 347.8 bits (891), Expect = 5.300e-92 Identity = 204/456 (44.74%), Postives = 272/456 (59.65%), Query Frame = 0
Query: 46 VAICAGMAAFGFKGRVNVVGVDLGTTFSVVAVNEHGTVRVIKDKYGDPLVPSIVSFAPGGNVLVGKEARRRLALDPTHTIYDAKRFIGRDFDDPTVRMELERHPFSVIKHEGNYSGVGFAM----NDETVTPEEVGAHVLRRLLDMTADYLGHRQVTKAVIAVPAKFNSRQKRATGEAYMRAGLKVMRVLEEPTAAAIAYGLHQKPNVHHILVYDFGGGTLDVSLLYVHEGFVTVEGIDGDDHLGGADFDHCLSHHLV---------------ATYGDVTSSIPSSSSLYDLEAGL------GE--GKEALFFDDDGDIPSSNSTRSSSPHALHDCASYTMLSIAEHLKKRLSSSPSASFSCLSNKKDGGLSKNITVTRQAFEKACADVFARALAPVDLCLESNGMATSEIDEVVMVGGTTRIPKVREMLRVHLQVASLNTHIDPDITVAVGTACV 475
V CA +AA GF+GR VVG+DLGTTFSV+ VNE G + +I G PL+PS+VSF G V VG++A + L P +TIY AKRFIGR+F D V E H F +++ + + S F + + +V+P+ VG+HVL LL A YLGH QV+KAVIAVPAKF++RQK AT EA+ AGL+V+R+LEEPTAAA+A+GLH+KPNV+HILVYD GGGTLDVSLL+V++G V V G DGDD+LGG+DFD C++H L A T+ + +LY L GL GE E + ++ + S + +P D + AE + ++ +S S + +TR +E++CA +F R +APVD L + EIDEVVMVGG TR P+VR +L HL V LN IDPD+ VA G A +
Sbjct: 12 VGACAALAATGFRGRQTVVGIDLGTTFSVIGVNEGGKIAIIPGAEGSPLLPSVVSFLDNGRVAVGQDATKLLESQPANTIYGAKRFIGREFSDSAVSEEAAEHQFQLVQTKEDLSEAWFKIKRSGHPPSVSPQMVGSHVLGELLQRAAVYLGHSQVSKAVIAVPAKFDARQKAATVEAFRLAGLQVIRMLEEPTAAALAFGLHRKPNVNHILVYDLGGGTLDVSLLFVNDGSVEVLGSDGDDNLGGSDFDQCVAHLLERKLDRSIVALEEAEDAVSCGFTTPTCALHNLYPLSEGLRRLLTDGETAAVECMIPPEEAQRRNLRSPKKGTPSEDGDSQDAHRFAGAEGERCKMWNSLS-----------------LELTRTEYEQSCASLFDRGVAPVDRLLHHLDLTVDEIDEVVMVGGMTRTPRVRSLLESHLGVDRLNVDIDPDVVVAYGAATI 450
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G04130.3 ID=NO08G04130.3|Name=NO08G04130.3|organism=Nannochloropsis oceanica|type=mRNA|length=2318bp
CTTTAAATAGGGACGGGCGGCTGCACTTTCCCTGCCTAAACTTTGCGAAG
TCCACACAGCTCCATCCAACCCGAGCTGCCGACGGACACGACTCGTTCTA
CAAGACTCTCATAGGACAGCGAGGGGCAGCCATGGACAGTGCGGCTGGTC
GAATTGCCATTCTCATTCCTGTGCTAGGTGGTACGTACAAACTGCGAAAA
TATGCCTTCTTCGCCCTCGACTCAATTACATCTTTTTCCCTTTCATTCCC
TCTCACCTATTTCGCAGTGGCCATCTGTGCGGGTATGGCTGCCTTTGGAT
TCAAGGGGAGGGTCAATGTCGTTGGAGTCGACCTCGGCACGACCTTCTCT
GTTGTAGCCGTCAACGAGCACGGCACCGTCCGAGTCATCAAAGATAAATA
TGGTGATCCTCTCGTGCCTTCCATCGTGTCGTTTGCGCCGGGCGGAAACG
TGTTGGTGGGGAAAGAGGCGAGGAGACGGCTTGCTCTCGATCCAACACAC
ACCATTTACGACGCCAAGCGGTTCATTGGTCGAGATTTCGACGATCCTAC
CGTACGTATGGAGCTGGAGCGTCACCCCTTCTCGGTGATTAAGCACGAAG
GCAACTATTCGGGTGTTGGCTTTGCTATGAATGACGAGACTGTAACGCCT
GAGGAAGTGGGGGCACACGTGCTTCGGCGATTGCTGGATATGACTGCTGA
CTATCTCGGCCATCGACAGGTGACCAAGGCCGTGATTGCAGTTCCCGCCA
AATTCAACTCGCGTCAAAAACGCGCCACTGGTGAGGCATACATGCGCGCG
GGGCTCAAGGTAATGCGCGTCTTGGAAGAGCCAACAGCTGCTGCGATCGC
ATACGGGCTGCATCAAAAACCCAATGTCCACCACATTCTGGTCTATGACT
TTGGGGGGGGCACACTTGACGTATCGCTCTTATATGTGCACGAGGGCTTT
GTGACGGTGGAGGGCATTGATGGCGATGATCACTTGGGGGGTGCGGACTT
CGATCATTGCCTTTCCCACCATCTAGTAGCTACCTACGGCGATGTCACAT
CCTCTATACCCTCGTCTTCTTCCCTGTACGACCTTGAAGCAGGGCTAGGT
GAAGGAAAGGAAGCATTGTTCTTCGATGACGATGGAGACATACCTTCCTC
TAACTCCACTCGTTCCTCCTCTCCTCATGCCCTCCATGACTGTGCATCCT
ACACCATGCTCTCCATCGCTGAGCACTTGAAGAAGCGCCTCTCTTCTTCT
CCCTCTGCCTCTTTTTCTTGCCTGTCCAACAAGAAGGACGGTGGTCTATC
AAAGAACATCACAGTAACCCGGCAAGCCTTCGAGAAGGCGTGCGCTGACG
TATTTGCGAGGGCCCTTGCTCCGGTAGATTTGTGTTTGGAAAGCAATGGA
ATGGCGACGAGTGAAATCGATGAGGTCGTCATGGTGGGGGGTACCACACG
AATACCCAAAGTGAGAGAGATGCTGCGAGTGCACCTCCAAGTGGCAAGTT
TGAACACACACATTGACCCGGACATAACGGTGGCAGTAGGTACAGCGTGC
GTGGTAGACTAGAAGAAATACGGAGAGAAATAGGGGAAATATGGAAACGT
ATGCATAAAACGTCTAAAGTAAAGAAGCTTAGAAACGCTGCACACTTTCA
ATTGTTGTAACATGCTCTCGTTGGTGTCATTCATAATTTGAATTATCTTT
GTAAGCTCTACCATTTTTCTGCCATACACGGAGTCCGAAATGTACAAGAA
GAAAAACCGAAAAAGTTACAATTCCTAAATTCAATTCCCGAGCTGTATCG
ATGGCAAATGTGAACACGAGCAAGTCGCTTTTTCATGTACGCCTCACTGT
GTACTAGACTCCATGGCCGATCGTAGATCGTCTTTATTATTGGACATTCA
TTCCTCTTCTGAAACATGTTAAAGAGCGGTGGGACATTTGAAGCTACGAT
AAATGTGGGCAGTTCATCTCGTGATTTCCAAAGAAGCGCACTCTCACAAT
AGATAAAGGGGGGACGCAAGGGACATGAAAACCTCTCCTTGGCTTGAATG
AATGCTCCACAGAGTAGACAATGAATTGAATGCTGAACTTGGATTCCACA
CGAAGCCATCCAATGAGAGGCGGAAAATGCGCAAAGACAGTACCTGCTCC
TTGGTGACAGACAGAATGCTTGCCTTTGTCCATCTCTTCAAGAACGTCCT
TCAACCTTATTTACCGGAACTCTTTTTTGGCCATAGGGGTGCTCTGTTTT
TCGAGCCCTCTAAGATACACTCCATTACATGCTCACCGACCTTTTTCTTC
TGGGGGGTGGGTGGGTGG back to topprotein sequence of NO08G04130.3 >NO08G04130.3-protein ID=NO08G04130.3-protein|Name=NO08G04130.3|organism=Nannochloropsis oceanica|type=polypeptide|length=477bp
MDSAAGRIAILIPVLGGTYKLRKYAFFALDSITSFSLSFPLTYFAVAICA
GMAAFGFKGRVNVVGVDLGTTFSVVAVNEHGTVRVIKDKYGDPLVPSIVS
FAPGGNVLVGKEARRRLALDPTHTIYDAKRFIGRDFDDPTVRMELERHPF
SVIKHEGNYSGVGFAMNDETVTPEEVGAHVLRRLLDMTADYLGHRQVTKA
VIAVPAKFNSRQKRATGEAYMRAGLKVMRVLEEPTAAAIAYGLHQKPNVH
HILVYDFGGGTLDVSLLYVHEGFVTVEGIDGDDHLGGADFDHCLSHHLVA
TYGDVTSSIPSSSSLYDLEAGLGEGKEALFFDDDGDIPSSNSTRSSSPHA
LHDCASYTMLSIAEHLKKRLSSSPSASFSCLSNKKDGGLSKNITVTRQAF
EKACADVFARALAPVDLCLESNGMATSEIDEVVMVGGTTRIPKVREMLRV
HLQVASLNTHIDPDITVAVGTACVVD* back to topmRNA from alignment at chr8:1185892..1188995+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO08G04130.3 ID=NO08G04130.3|Name=NO08G04130.3|organism=Nannochloropsis oceanica|type=mRNA|length=3104bp|location=Sequence derived from alignment at chr8:1185892..1188995+ (Nannochloropsis oceanica)
CTTTAAATAGGGACGGGCGGCTGCACTTTCCCTGCCTAAACTTTGCGAAG
TCCACACAGCTCCATCCAACCCGAGCTGCCGACGGACACGACTCGTTCTA
CAAGACTCTCATAGGACAGCGAGGGGCAGCCATGGACAGTGCGGCTGGTC
GAATTGCCATTCTCATTCCTGTGCTAGGTGGTACGTACAAACTGCGAAAA
TATGCCTTCTTCGCCCTCGACTCAATTACATCTTTTTCCCTTTCATTCCC
TCTCACCTATTTCGCAGTGGCCATCTGTGCGGGTATGGCTGCCTTTGGAT
TCAAGGGGAGGGTCAATGTCGTTGGTACGTCCGTAATCTTTTTGGATTAT
CTTAGCGGTGCTTGGGTTTGTGGGAAGATGCGCTATGGCCCTCACAGTAC
TCCCTTCCTCCCTCCTTCACCCCTTCAGGAGTCGACCTCGGCACGACCTT
CTCTGTTGTAGCCGTCAACGAGCACGGCACCGTCCGAGTCATCAAAGATA
AATATGGTGATCCTCTCGTGCCTTCCATCGTGTCGTTTGCGCCGGGCGGA
AACGTGTTGGTGGGGAAAGAGGCGAGGAGACGGCTTGCTCTCGATCCAAC
ACACACCATTTACGACGCCAAGCGGTTCATTGGTCGAGAGTACGAGTACT
GGGAGGGGAGAGGGACGAGGAAGAGAGGAGTTATATGCGTTAAATAGGGC
ATCATTCAGCTAATTTGAGGCGTGTGTCTTGTGCCTGGGTCGATTCCTCA
TGCACATCCTCTTCTCCGCCCCTCCCTCCCTCCGTGCCTCCTTCACGCCC
CTCACAGTTTCGACGATCCTACCGTACGTATGGAGCTGGAGCGTCACCCC
TTCTCGGTGATTAAGCACGAAGGCAACTATTCGGGTGTTGGCTTTGCTAT
GAATGACGAGGTGCGGAGAGCGGAGGAGCTGAGGGAGGGAGGGCAGGGAG
GATAGCTGGGTGAAGACGACCTCAGTTTCCAATTCTTTGGTCTTAGTCCC
CCTCTCCTTGATCTCGTTTTTCCATAGACTGTAACGCCTGAGGAAGTGGG
GGCACACGTGCTTCGGCGATTGCTGGATATGACTGCTGACTATCTCGGCC
ATCGACAGGTAGGGAGGAGGGGAGTGAGGGAGGGAGGAAGGCAGGGACGG
TGAGCGAGCAGGATGTGGGAGGAGATTAAATGGCGATTGACGGAATCTCT
TCCTCCCATCGTCGCTCCTACCTCTCACAGGTGACCAAGGCCGTGATTGC
AGTTCCCGCCAAATTCAACTCGCGTCAAAAACGCGCCACTGGTGAGGCAT
ACATGCGCGCGGGGCTCAAGGTAATCAGGAAATCAGGGAGAAGGAAATCG
TGAAACGTCGCTACGAAAGGAATGGGGGAGAAATTTATTTATTTTTTCTT
CCCTCACTCCCCCCCTCCCTCCCCACAGGTAATGCGCGTCTTGGAAGAGC
CAACAGCTGCTGCGATCGCATACGGGCTGCATCAAAAACCCAATGTCCAC
CACATTCTGGTCTATGACTTTGGGGGGGGCACACTTGACGTATCGCTCTT
ATATGTGCACGAGGGCTTTGTGACGGTGGAGGGCATTGATGGCGATGATC
ACTTGGGGGGTAAGTTTTTTTAATTCCTCTCCACCTTTAAAAATTCCTTA
TTTGTGTAATATAATCTGTGTGTATCTTTTGCGAGCGTTTTGGAGGTAGG
TGCCAAGGGGAGTGGAGGCAGGATGCGCCAGTTATACGTAACACCATATT
TATTTATACAAACTGTTGTACATTAGGTGCGGACTTCGATCATTGCCTTT
CCCACCATCTAGTAGCTACCTACGGCGATGTCACATCCTCTATACCCTCG
TCTTCTTCCCTGTACGACCTTGAAGCAGGGCTAGGTGAAGGAAAGGAAGC
ATTGTTCTTCGATGACGATGGAGACATACCTTCCTCTAACTCCACTCGTT
CCTCCTCTCCTCATGCCCTCCATGACTGTGCATCCTACACCATGCTCTCC
ATCGCTGAGCACTTGAAGAAGCGCCTCTCTTCTTCTCCCTCTGCCTCTTT
TTCTTGCCTGTCCAACAAGAAGGACGGTGGTCTATCAAAGAACATCACAG
TAACCCGGCAAGCCTTCGAGAAGGCGTGCGCTGACGTATTTGCGAGGGCC
CTTGCTCCGGTAGATTTGTGTTTGGAAAGCAATGGAATGGCGACGAGTGA
AATCGATGAGGTCGTCATGGTGGGGGGTACCACACGAATACCCAAAGTGA
GAGAGATGCTGCGAGTGCACCTCCAAGTGGCAAGTTTGAACACACACATT
GACCCGGACATAACGGTGGCAGTAGGTACAGCGTGCGTGGTAGACTAGAA
GAAATACGGAGAGAAATAGGGGAAATATGGAAACGTATGCATAAAACGTC
TAAAGTAAAGAAGCTTAGAAACGCTGCACACTTTCAATTGTTGTAACATG
CTCTCGTTGGTGTCATTCATAATTTGAATTATCTTTGTAAGCTCTACCAT
TTTTCTGCCATACACGGAGTCCGAAATGTACAAGAAGAAAAACCGAAAAA
GTTACAATTCCTAAATTCAATTCCCGAGCTGTATCGATGGCAAATGTGAA
CACGAGCAAGTCGCTTTTTCATGTACGCCTCACTGTGTACTAGACTCCAT
GGCCGATCGTAGATCGTCTTTATTATTGGACATTCATTCCTCTTCTGAAA
CATGTTAAAGAGCGGTGGGACATTTGAAGCTACGATAAATGTGGGCAGTT
CATCTCGTGATTTCCAAAGAAGCGCACTCTCACAATAGATAAAGGGGGGA
CGCAAGGGACATGAAAACCTCTCCTTGGCTTGAATGAATGCTCCACAGAG
TAGACAATGAATTGAATGCTGAACTTGGATTCCACACGAAGCCATCCAAT
GAGAGGCGGAAAATGCGCAAAGACAGTACCTGCTCCTTGGTGACAGACAG
AATGCTTGCCTTTGTCCATCTCTTCAAGAACGTCCTTCAACCTTATTTAC
CGGAACTCTTTTTTGGCCATAGGGGTGCTCTGTTTTTCGAGCCCTCTAAG
ATACACTCCATTACATGCTCACCGACCTTTTTCTTCTGGGGGGTGGGTGG
GTGG back to topCoding sequence (CDS) from alignment at chr8:1185892..1188995+ >NO08G04130.3 ID=NO08G04130.3|Name=NO08G04130.3|organism=Nannochloropsis oceanica|type=CDS|length=1431bp|location=Sequence derived from alignment at chr8:1185892..1188995+ (Nannochloropsis oceanica)
ATGGACAGTGCGGCTGGTCGAATTGCCATTCTCATTCCTGTGCTAGGTGG
TACGTACAAACTGCGAAAATATGCCTTCTTCGCCCTCGACTCAATTACAT
CTTTTTCCCTTTCATTCCCTCTCACCTATTTCGCAGTGGCCATCTGTGCG
GGTATGGCTGCCTTTGGATTCAAGGGGAGGGTCAATGTCGTTGGAGTCGA
CCTCGGCACGACCTTCTCTGTTGTAGCCGTCAACGAGCACGGCACCGTCC
GAGTCATCAAAGATAAATATGGTGATCCTCTCGTGCCTTCCATCGTGTCG
TTTGCGCCGGGCGGAAACGTGTTGGTGGGGAAAGAGGCGAGGAGACGGCT
TGCTCTCGATCCAACACACACCATTTACGACGCCAAGCGGTTCATTGGTC
GAGATTTCGACGATCCTACCGTACGTATGGAGCTGGAGCGTCACCCCTTC
TCGGTGATTAAGCACGAAGGCAACTATTCGGGTGTTGGCTTTGCTATGAA
TGACGAGACTGTAACGCCTGAGGAAGTGGGGGCACACGTGCTTCGGCGAT
TGCTGGATATGACTGCTGACTATCTCGGCCATCGACAGGTGACCAAGGCC
GTGATTGCAGTTCCCGCCAAATTCAACTCGCGTCAAAAACGCGCCACTGG
TGAGGCATACATGCGCGCGGGGCTCAAGGTAATGCGCGTCTTGGAAGAGC
CAACAGCTGCTGCGATCGCATACGGGCTGCATCAAAAACCCAATGTCCAC
CACATTCTGGTCTATGACTTTGGGGGGGGCACACTTGACGTATCGCTCTT
ATATGTGCACGAGGGCTTTGTGACGGTGGAGGGCATTGATGGCGATGATC
ACTTGGGGGGTGCGGACTTCGATCATTGCCTTTCCCACCATCTAGTAGCT
ACCTACGGCGATGTCACATCCTCTATACCCTCGTCTTCTTCCCTGTACGA
CCTTGAAGCAGGGCTAGGTGAAGGAAAGGAAGCATTGTTCTTCGATGACG
ATGGAGACATACCTTCCTCTAACTCCACTCGTTCCTCCTCTCCTCATGCC
CTCCATGACTGTGCATCCTACACCATGCTCTCCATCGCTGAGCACTTGAA
GAAGCGCCTCTCTTCTTCTCCCTCTGCCTCTTTTTCTTGCCTGTCCAACA
AGAAGGACGGTGGTCTATCAAAGAACATCACAGTAACCCGGCAAGCCTTC
GAGAAGGCGTGCGCTGACGTATTTGCGAGGGCCCTTGCTCCGGTAGATTT
GTGTTTGGAAAGCAATGGAATGGCGACGAGTGAAATCGATGAGGTCGTCA
TGGTGGGGGGTACCACACGAATACCCAAAGTGAGAGAGATGCTGCGAGTG
CACCTCCAAGTGGCAAGTTTGAACACACACATTGACCCGGACATAACGGT
GGCAGTAGGTACAGCGTGCGTGGTAGACTAG back to top
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