NO08G01650.1, NO08G01650.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G01650.1
Unique NameNO08G01650.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1491
Alignment locationchr8:517945..520098 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:517945..520098 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO08G01650.1 vs.
Match: EWM26615.1 (solute carrier family member 36 [Nannochloropsis gaditana])

HSP 1 Score: 615.1 bits (1585), Expect = 1.500e-172
Identity = 317/408 (77.70%), Postives = 350/408 (85.78%), Query Frame = 0 
Query:    8 ATTQKSASSRCRRRALHCLRSLLASTFMVAAMVLTHTATPVDAALSGGKKGMPSVAAVTKVKATSPISPKSTPASKLSENDQALARQKQLYSLFAGGLAGAVASSITCPIEVVKTQLQSSRIGGGSNPFKVAREILAADGLKGFFRGLPPTLVGIIPARATYFWAYSTSKHALTPSLGDSTLTHILSGIAAGVTGNTITNPIWMVKTRMQLLADGAAGQKAYTGYRNAISRIYREEGVKGFWKGLSASYWGCSEGCIQFVVYEKLKKQLLIRNNERRSSQGLKESEDLPPAYTLGAAAFSKFIATTTTYPHEVVRTRLREQARNGAFKYRSMWQSLRLIAKEEGRRGLYAGMGTHIARVVPNTAIMFLSFELVNTFLGRRFTEKQAAGDAAQRLGDDAELGFPEQEED 416
            A  +KS    C    LHCLR    +  M+A M+ ++TAT  DA   GG+  + SV+   K KA       ++P +  S+N+QALARQKQLYSLFAGG AGAVASSITCPIEVVKTQLQSSR+GGGSNPF+VAREILAADG KGFFRGLPPTLVGIIPARATYFWAYSTSK AL PSLGD+TLTHILSGIAAGVTGNTITNPIWMVKTRMQL+ADGA GQ AYT YRNAI+RIYREEG+KGFWKGLSASYWGCSEGCIQFVVYEKLKKQLL+RNN++R ++GL+  EDLPP +TL AAAFSKF+ATT TYPHEVVRTRLREQARNGAFKYRSMWQSLRLIAKEEGRRGLYAGMGTH+ARVVPNTAIMFLSFELVN+FLG+RF EKQ A DAAQ +GD+AELGFPE EED
Sbjct:    7 AVQRKSPRFNC----LHCLRPFAINILMIAVMLWSNTATMADAGDVGGRHVLGSVS---KAKAIPKSGDAASPPNP-SQNEQALARQKQLYSLFAGGFAGAVASSITCPIEVVKTQLQSSRVGGGSNPFRVAREILAADGFKGFFRGLPPTLVGIIPARATYFWAYSTSKQALMPSLGDNTLTHILSGIAAGVTGNTITNPIWMVKTRMQLMADGAVGQMAYTSYRNAITRIYREEGLKGFWKGLSASYWGCSEGCIQFVVYEKLKKQLLVRNNDKRRAEGLEAKEDLPPTFTLAAAAFSKFVATTATYPHEVVRTRLREQARNGAFKYRSMWQSLRLIAKEEGRRGLYAGMGTHVARVVPNTAIMFLSFELVNSFLGKRFAEKQQAQDAAQLVGDEAELGFPEPEED 406
The following BLAST results are available for this feature:
BLAST of NO08G01650.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26615.11.500e-17277.70solute carrier family member 36 [Nannochloropsis g... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G01650NO08G01650Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G01650.1NO08G01650.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G01650.1.cds1NO08G01650.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G01650.1.cds2NO08G01650.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G01650.1.cds3NO08G01650.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G01650.1.cds4NO08G01650.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G01650.1.cds5NO08G01650.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G01650.1 ID=NO08G01650.1|Name=NO08G01650.1|organism=Nannochloropsis oceanica|type=mRNA|length=1491bp
AGGACGGCGGAGTCTCCACGCCACGCAGTCTAACGACGCCGAACAGGCCG
ATGAAGCGCTCACTCGCGGCCGCCACCACTCAAAAAAGTGCTTCTTCCCG
CTGCCGCCGTCGTGCCCTTCATTGCCTACGCTCTCTCTTGGCCAGCACAT
TCATGGTCGCCGCGATGGTGCTGACCCACACAGCCACCCCGGTGGACGCC
GCGCTCTCGGGAGGCAAAAAGGGAATGCCATCGGTAGCTGCTGTTACCAA
GGTCAAGGCCACGAGCCCGATTTCCCCCAAGTCCACCCCTGCCTCGAAGC
TCAGTGAGAATGATCAGGCCCTTGCGAGACAGAAGCAGCTTTACAGTCTT
TTTGCCGGAGGTCTTGCTGGCGCCGTGGCATCAAGTATAACGTGCCCTAT
CGAGGTGGTCAAGACGCAATTACAGTCCTCGCGGATAGGCGGGGGCTCGA
ACCCTTTTAAGGTCGCTCGGGAGATCTTGGCGGCTGATGGCCTAAAGGGG
TTCTTCCGCGGCTTGCCCCCCACCCTGGTCGGTATTATTCCCGCCCGCGC
CACCTACTTCTGGGCTTACTCCACGTCCAAGCACGCCCTGACCCCCTCTC
TCGGTGACAGCACCTTGACGCACATCTTGTCGGGGATCGCCGCTGGCGTG
ACTGGCAACACCATCACCAACCCCATCTGGATGGTTAAGACCCGTATGCA
GCTCCTGGCCGATGGCGCGGCGGGTCAAAAAGCTTACACCGGGTACCGCA
ACGCCATTTCGCGCATCTACCGCGAAGAAGGGGTAAAAGGCTTTTGGAAG
GGCCTCTCCGCCTCTTATTGGGGTTGTTCCGAGGGATGCATTCAATTTGT
CGTCTATGAAAAGCTCAAGAAACAGCTCTTGATTCGCAACAATGAGAGAC
GATCTTCTCAAGGCCTAAAAGAGAGTGAGGACTTGCCTCCTGCCTATACT
CTCGGGGCGGCGGCCTTCTCCAAATTCATCGCTACCACGACCACATACCC
CCATGAGGTGGTACGGACTCGCTTGAGGGAACAGGCAAGGAATGGTGCCT
TCAAATACCGGAGTATGTGGCAGTCTTTGCGGTTGATTGCGAAGGAGGAA
GGACGAAGGGGGTTGTATGCCGGGATGGGCACTCACATTGCACGAGTCGT
TCCCAACACTGCCATCATGTTCTTGTCGTTTGAACTGGTCAACACCTTTT
TGGGCCGGCGCTTTACCGAGAAGCAGGCGGCCGGGGATGCGGCGCAACGG
TTGGGGGATGATGCCGAGTTGGGATTTCCGGAGCAGGAGGAGGATTAAGG
GAAGGAGGGAGGGCGAGATGGAATGGAAAGAGGGATGGGAGACATGAAAG
TATGATCGGGCTTGAGAAAGGACTCTGATATTTTACAAGAAAGACATATA
GCTAACAACGCACAGCTCAGTAAAAAAGAACCAAATGCATAATGCAATGC
AACCTCCCACCCATTCTTGGTTGAAGAGAAAGAAGGACAGA
back to top

protein sequence of NO08G01650.1

>NO08G01650.1-protein ID=NO08G01650.1-protein|Name=NO08G01650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=416bp
MKRSLAAATTQKSASSRCRRRALHCLRSLLASTFMVAAMVLTHTATPVDA
ALSGGKKGMPSVAAVTKVKATSPISPKSTPASKLSENDQALARQKQLYSL
FAGGLAGAVASSITCPIEVVKTQLQSSRIGGGSNPFKVAREILAADGLKG
FFRGLPPTLVGIIPARATYFWAYSTSKHALTPSLGDSTLTHILSGIAAGV
TGNTITNPIWMVKTRMQLLADGAAGQKAYTGYRNAISRIYREEGVKGFWK
GLSASYWGCSEGCIQFVVYEKLKKQLLIRNNERRSSQGLKESEDLPPAYT
LGAAAFSKFIATTTTYPHEVVRTRLREQARNGAFKYRSMWQSLRLIAKEE
GRRGLYAGMGTHIARVVPNTAIMFLSFELVNTFLGRRFTEKQAAGDAAQR
LGDDAELGFPEQEED*
back to top

mRNA from alignment at chr8:517945..520098+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G01650.1 ID=NO08G01650.1|Name=NO08G01650.1|organism=Nannochloropsis oceanica|type=mRNA|length=2154bp|location=Sequence derived from alignment at chr8:517945..520098+ (Nannochloropsis oceanica)
AGGACGGCGGAGTCTCCACGCCACGCAGTCTAACGACGCCGAACAGGCCG
ATGAAGCGCTCACTCGCGGCCGCCACCACTCAAAAAAGTGCTTCTTCCCG
CTGCCGCCGTCGTGCCCTTCATTGCCTACGCTCTCTCTTGGCCAGCACAT
TCATGGTCGCCGCGATGGTGCTGACCCACACAGCCACCCCGGTGGACGCC
GCGCTCTCGGGAGGCAAAAAGGGAATGCCATCGGTAGCTGCTGTTACCAA
GGTCAAGGCCACGAGCCCGATTTCCCCCAAGTCCACCCCTGCCTCGAAGC
TCAGGTATGCAGGGACGCGGTGTCTGGGAGGGGGCTCCTGTTGGTTAAGC
GGTGGAGGGAGGCAATCACCCACTTTCGGCCCTTTTCCCGATACTATTAA
CAGTGAGAATGATCAGGCCCTTGCGAGACAGAAGCAGCTTTACAGTCTTT
TTGCCGGAGGTATGAAGAAAAGGATGAGGGGATAAGGAGGGGAGGGAGAC
GGAGGATTGCAACATATAATTCACCATTCGCACCCTAACACTCTATTTAT
TTAATTAAACTTTAAAAAAAGGTCTTGCTGGCGCCGTGGCATCAAGTATA
ACGTGCCCTATCGAGGTGGTCAAGACGCAATTACAGTCCTCGCGGATAGG
CGGGGGCTCGAACCCTTTTAAGGTCGCTCGGGAGATCTTGGCGGCTGATG
GTAAAGAGTGAAAAAGACCGCCTCTTGTCTGTCGGGGATGATGTCGGGGA
TGACAGGAGAATTTTCGTTCGTCTGTCGACATTTGTTGTTGTACCAATAC
CTGGTTTCTCTCTTTCTCTCTGACTCTCTTTCTCACATTTTTAGGCATAC
CAGAGTCTTTAATCTGCGGCCTGGCCCCCACCCTCGTCCGCACCATCTAC
CCTCCCTTTCCCATCTCCTCCATTCATCTTGGTGTTCTTTTCACCCTATT
CATCTCACCATCCCTCTGTATTGTGATATATGTATAACAAACGACAGGCC
TAAAGGGGTTCTTCCGCGGCTTGCCCCCCACCCTGGTCGGTATTATTCCC
GCCCGCGCCACCTACTTCTGGGCTTACTCCACGTCCAAGCACGCCCTGAC
CCCCTCTCTCGGTGACAGCACCTTGACGCACATCTTGTCGGGGATCGCCG
CTGTACGTTTTTCAAAAAGAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAGAGAGGGAGAGAGAGGCCTCCAGCTCCTTACTCGCCACTCACACTCTT
ATCCTCCCTCCCTCCCTCCCTCTCTCCCTCCCTCCCTTCCTCCTTTCCTT
TCTGCAGGGCGTGACTGGCAACACCATCACCAACCCCATCTGGATGGTTA
AGACCCGTATGCAGCTCCTGGCCGATGGCGCGGCGGGTCAAAAAGCTTAC
ACCGGGTACCGCAACGCCATTTCGCGCATCTACCGCGAAGAAGGGGTAAA
AGGCTTTTGGAAGGGCCTCTCCGCCTCTTATTGGGGTTGTTCCGAGGGAT
GCATTCAATTTGTCGTCTATGAAAAGCTCAAGAAACAGCTCTTGATTCGC
AACAATGAGAGACGATCTTCTCAAGGCCTAAAAGAGAGTGAGGACTTGCC
TCCTGCCTATACTCTCGGGGCGGCGGCCTTCTCCAAATTCATCGCTACCA
CGACCACATACCCCCATGAGGTGGTACGGACTCGCTTGAGGGAACAGGCA
AGGAATGGTGCCTTCAAATACCGGAGTATGTGGCAGTCTTTGCGGTTGAT
TGCGAAGGAGGAAGGACGAAGGGGGTTGTATGCCGGGATGGGCACTCACA
TTGCACGAGTCGTTCCCAACACTGCCATCATGTTCTTGTCGTTTGAACTG
GTCAACACCTTTTTGGGCCGGCGCTTTACCGAGAAGCAGGCGGCCGGGGA
TGCGGCGCAACGGTTGGGGGATGATGCCGAGTTGGGATTTCCGGAGCAGG
AGGAGGATTAAGGGAAGGAGGGAGGGCGAGATGGAATGGAAAGAGGGATG
GGAGACATGAAAGTATGATCGGGCTTGAGAAAGGACTCTGATATTTTACA
AGAAAGACATATAGCTAACAACGCACAGCTCAGTAAAAAAGAACCAAATG
CATAATGCAATGCAACCTCCCACCCATTCTTGGTTGAAGAGAAAGAAGGA
CAGA
back to top

Coding sequence (CDS) from alignment at chr8:517945..520098+

>NO08G01650.1 ID=NO08G01650.1|Name=NO08G01650.1|organism=Nannochloropsis oceanica|type=CDS|length=1248bp|location=Sequence derived from alignment at chr8:517945..520098+ (Nannochloropsis oceanica)
ATGAAGCGCTCACTCGCGGCCGCCACCACTCAAAAAAGTGCTTCTTCCCG
CTGCCGCCGTCGTGCCCTTCATTGCCTACGCTCTCTCTTGGCCAGCACAT
TCATGGTCGCCGCGATGGTGCTGACCCACACAGCCACCCCGGTGGACGCC
GCGCTCTCGGGAGGCAAAAAGGGAATGCCATCGGTAGCTGCTGTTACCAA
GGTCAAGGCCACGAGCCCGATTTCCCCCAAGTCCACCCCTGCCTCGAAGC
TCAGTGAGAATGATCAGGCCCTTGCGAGACAGAAGCAGCTTTACAGTCTT
TTTGCCGGAGGTCTTGCTGGCGCCGTGGCATCAAGTATAACGTGCCCTAT
CGAGGTGGTCAAGACGCAATTACAGTCCTCGCGGATAGGCGGGGGCTCGA
ACCCTTTTAAGGTCGCTCGGGAGATCTTGGCGGCTGATGGCCTAAAGGGG
TTCTTCCGCGGCTTGCCCCCCACCCTGGTCGGTATTATTCCCGCCCGCGC
CACCTACTTCTGGGCTTACTCCACGTCCAAGCACGCCCTGACCCCCTCTC
TCGGTGACAGCACCTTGACGCACATCTTGTCGGGGATCGCCGCTGGCGTG
ACTGGCAACACCATCACCAACCCCATCTGGATGGTTAAGACCCGTATGCA
GCTCCTGGCCGATGGCGCGGCGGGTCAAAAAGCTTACACCGGGTACCGCA
ACGCCATTTCGCGCATCTACCGCGAAGAAGGGGTAAAAGGCTTTTGGAAG
GGCCTCTCCGCCTCTTATTGGGGTTGTTCCGAGGGATGCATTCAATTTGT
CGTCTATGAAAAGCTCAAGAAACAGCTCTTGATTCGCAACAATGAGAGAC
GATCTTCTCAAGGCCTAAAAGAGAGTGAGGACTTGCCTCCTGCCTATACT
CTCGGGGCGGCGGCCTTCTCCAAATTCATCGCTACCACGACCACATACCC
CCATGAGGTGGTACGGACTCGCTTGAGGGAACAGGCAAGGAATGGTGCCT
TCAAATACCGGAGTATGTGGCAGTCTTTGCGGTTGATTGCGAAGGAGGAA
GGACGAAGGGGGTTGTATGCCGGGATGGGCACTCACATTGCACGAGTCGT
TCCCAACACTGCCATCATGTTCTTGTCGTTTGAACTGGTCAACACCTTTT
TGGGCCGGCGCTTTACCGAGAAGCAGGCGGCCGGGGATGCGGCGCAACGG
TTGGGGGATGATGCCGAGTTGGGATTTCCGGAGCAGGAGGAGGATTAA
back to top
Synonyms
Publications