|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr7 | genome | chr7:203059..206327 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO07G00550.1 vs.
Match: EWM27310.1 (protein kinase [Nannochloropsis gaditana]) HSP 1 Score: 322.0 bits (824), Expect = 2.800e-84 Identity = 189/395 (47.85%), Postives = 242/395 (61.27%), Query Frame = 0
Query: 2 TPYAPGGDLFNYLARRPPAR-RHLSERKACAFLLDIVEALTYLKKNGMAHRDVSLENVVLALGEVMTEEEVWREEAEDWIGSAPSALYPVAGGGGGGAAAAAAAAAAVAGGQQRRVHDQCVLLPAPYPEVLLGEQAFLPTMPHFFHSTGYGPAPPPGSHGP----THHQQAGHVPITVGQEMRAAEASALEPSPPPQAHHYRHHYYNVLHPPSSSSSPSYSSNSSSASPPPHPSL----PPPPRRHWRCTLIDLGMASRLPESKDGIKIRRSYHQSRGKPGYVSPEIFYEQPSDGFSSDIWSLGVILYTLLTGHPLYASPWDPAFEALVGGKTRRLIHHYKLKYGCSIHLTAEDLICAMLNPCPSERPCLAQIKASAWVCDVLRGRQEEQQQQQQ 388
TPY PGGDL Y+++RP + R L E KAC F LDIV AL YL+ + HRD+SLEN+VL LGE MT E E+ E+ + L+ GG G A A + +HDQ VLLP P+P+VLLGE A LP MPH H+ GYGPAPPP G T+ AGH+ + + A +P P P+AHHYRH YY+ L + P S S PPP PS PPPPRRHWRC LID GMA RLPESK G I + + RGK GYVSPE +YEQP +G S+D+WSLGVILY LTGHPLY PWDPAF+AL G+ R+++ HY+ + + TAEDLICAML+P P +RP L++++ + WV +V + ++ +++
Sbjct: 172 TPYGPGGDLLTYISQRPGGKARRLGEDKACRFFLDIVAALEYLEAARVVHRDLSLENLVLTLGEEMTAWEAEEEKEEE------AVLWGEEEEGGEGGRQDADGGAREG---RAHIHDQRVLLPPPHPDVLLGENARLPHMPHLLHALGYGPAPPPVPPGTLGEVTNVHVAGHLRASTVTDREAMLDFLRQPPPGPEAHHYRHLYYHTLQ----DALPPSSFPVSPFPPPPPPSTPAPKPPPPRRHWRCVLIDFGMAVRLPESKSGKTIVLTQQRCRGKLGYVSPESYYEQPINGQSTDVWSLGVILYIFLTGHPLYRYPWDPAFKALAAGEARQVLAHYREEMKLRLPETAEDLICAMLHPDPKKRPTLSELRGAPWVREVQERTRRAREGREE 553
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G00550.1 ID=NO07G00550.1|Name=NO07G00550.1|organism=Nannochloropsis oceanica|type=mRNA|length=3041bp ACAGGTGCATGGACGATAATGGCTTCGTTCCCCCACACCTTGAAAGGATT GCGTGGGAGCGGCGGCTAGTCCGTGGCTTGGCTGGGCACACATTTAGTGA AACACTTTTGATCACGGAGCCATCGGCTTCTGATGGTGCTGATCGAGATG ACATACGAGAGGGAAGGCAACCGCAACCGCGTCCCCCATGGCCCCTGCTA CGACGAGATGCATCAAGAGCCTATTTGTTGCTTCGCCTCCTGTCCCATGA CAAGCTCCATGTGGCCACGATACTGGCCTCTGAAGTTCGAGAAGACAAGG CCACTGGCGTCATGATCCAAGAAACGGGGCCATACTATGTGGTCAAGGTG AGTCAGAGGGAAAGGAAGGGCGGGTGGGGGAAGGGGGGAGCACAGGGTAT CTCATAAGTTCAACCAGCTGGTGGGCAGCATTAAGGAAGAAGCCCCTTGA CAGGGGAGGGAGGAAAGGCCCCCCGAAAGTCGTCGGAGTTTTTCCCCTGA TTCCACCTCTAATACTATCTTACCCCTTTCCTCCCTCTTCATCGATGAAT CACGCTCAACAGCCGTCGAAATCTTACCGCTCTACCCCATCCTATTACAC TTACCCCCTTTGTCCCTGCCTCAATCCCTCCCTCCTTTCCTCCTTAGGTC GTCCGCCTAGACTGCCTGGCCATCGACCCGATCGAAAACCCCTTCAACGA AGCAGCCGCCCTCCAGCTCCTCCTACAAAACGAAGGCCTCCTTGGAACCC TCCCGCCCTCCCTCCCTCGCCTCCATGCAGCTTTCAAAGACCAACACCAC CTGTACCTCATGACACCCTACGCTCCTGGTGGAGACCTGTTCAACTACCT CGCTCGTCGTCCCCCCGCCCGCCGACATCTCTCTGAACGCAAGGCCTGTG CCTTTCTTTTGGACATCGTCGAAGCGTTGACTTACTTGAAAAAAAACGGC ATGGCGCACAGGGACGTGTCGCTCGAAAACGTGGTCTTGGCCCTGGGCGA GGTCATGACGGAGGAAGAGGTTTGGAGGGAGGAAGCAGAAGATTGGATTG GGAGCGCTCCTTCGGCGCTATACCCGGTAGCAGGAGGAGGAGGAGGAGGA GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTTGCAGGAGGGCAACAGCG AAGGGTGCACGACCAGTGCGTCCTCCTCCCTGCCCCCTACCCGGAAGTCT TGCTGGGCGAGCAAGCCTTCTTGCCGACGATGCCTCACTTCTTCCACTCC ACAGGCTACGGGCCTGCCCCTCCTCCCGGCAGTCACGGTCCGACCCACCA CCAGCAGGCTGGTCACGTCCCCATTACCGTTGGGCAAGAAATGCGAGCCG CTGAAGCCTCGGCCCTTGAGCCTTCCCCCCCCCCTCAAGCCCATCACTAC CGCCACCACTACTACAACGTTCTCCACCCTCCCTCCTCCTCCTCATCCCC CTCCTACTCCTCCAACAGCTCTTCAGCCTCCCCTCCGCCCCACCCCTCCC TCCCTCCCCCACCCCGCCGCCATTGGCGGTGCACCCTCATCGACCTAGGA ATGGCTTCCCGCCTGCCCGAATCCAAAGACGGCATTAAAATTCGAAGATC CTACCATCAAAGCAGGGGCAAACCGGGCTATGTGTCCCCCGAGATCTTCT ACGAGCAACCTTCTGACGGGTTTTCGTCGGATATATGGTCCTTGGGCGTG ATACTGTACACACTCTTGACCGGCCACCCGCTTTATGCCAGCCCCTGGGA CCCGGCGTTTGAAGCCCTAGTGGGGGGAAAGACGAGGCGATTGATACACC ATTATAAGCTGAAATATGGGTGTTCCATTCACCTAACCGCTGAAGACCTC ATCTGTGCAATGCTGAATCCCTGCCCCTCCGAGCGCCCATGTCTCGCTCA AATCAAGGCCTCCGCCTGGGTCTGTGACGTGCTTCGTGGCCGACAGGAGG AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAG CAGCAGCAGCAGCAGCAGCAGCAGGAGCAGCGGCAGCAGCAGCCTGGAGA AATAGGTAATGGAGGTGTTGCAGTAGCAGCAGCAGCAGTGAGGAGTGCTA GGTAAAGGAGGAGTATAAAAAGGATGAAAAAAAGACGGAAGGAAAGAATT CCTGGTTCTACGACTGGAGAGGAAATGAGGAGAGGATCGCACGACAAGGT GATGGCGGACAAGGCTTTACGCATTGAAAGGAAAACGGGTGACTCAAGTG AGAAAATGACAGGGGAATGTACTAGCACCACCGAGAGTAAACAAGCGGAT AATGGATGACTGAAAGGAAACTGTATGAGCACTTACAAGAGAGATTGAAG GGGTAATCGATGATTGAAATGTATGAGTTAATCGATGATTGAAATGTATG AGCAGGAAAAAAGTGAAAGGGTACTGGGTGATCCAGAGAGAGATTACAAC GGATATGATTGGCGACATAAAGAGAAAGTGGAAGAGTAATGGATGATCAA GAGATGGAAATAGAATATGGATAGGATTAGCGCCATAAAGAGAGAGAGTA CACGGAACGGATTTGAAAGGAAAAGAAAGCGAGAGGGGAATGGATTAGTA ATAGAAAGAAGGAGAAAGGAAATGGAGCACCACAGAGATAAAGAGAAGAG GGAATGATGAGTAAGGGAGAGAAAGCGAAAGCCGAATTTATTATTTAGAT TGATTGAAATGTATGAGCACTAAGGAGAGAACGCGAAAGGGGAATGGATG GGCAACACCAGAAAGAGCCGGCAAATATGATATGGAAACCACGAGAAAAG CCAAAAGAAAAAAGAAATATAATTTTAATGCGACACCGAAAGGATTGTAT AAATGAAGAGGACAGAGGCAGAAAATGAAAGGGGAAAAGCTGACCGTGGA AAGGAGAAGGAGAAATCTACGCTCATAAGACACCACGTTGACCACAATCA TACTTGAGCCCATATTCACATCCACACCCTCACCAAAACGACGACGAATG CAAGCACGTGCAAAAGAAAAGAAAAACGTGCATCACTGCAA back to topprotein sequence of NO07G00550.1 >NO07G00550.1-protein ID=NO07G00550.1-protein|Name=NO07G00550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=432bp MTPYAPGGDLFNYLARRPPARRHLSERKACAFLLDIVEALTYLKKNGMAH RDVSLENVVLALGEVMTEEEVWREEAEDWIGSAPSALYPVAGGGGGGAAA AAAAAAAVAGGQQRRVHDQCVLLPAPYPEVLLGEQAFLPTMPHFFHSTGY GPAPPPGSHGPTHHQQAGHVPITVGQEMRAAEASALEPSPPPQAHHYRHH YYNVLHPPSSSSSPSYSSNSSSASPPPHPSLPPPPRRHWRCTLIDLGMAS RLPESKDGIKIRRSYHQSRGKPGYVSPEIFYEQPSDGFSSDIWSLGVILY TLLTGHPLYASPWDPAFEALVGGKTRRLIHHYKLKYGCSIHLTAEDLICA MLNPCPSERPCLAQIKASAWVCDVLRGRQEEQQQQQQQQQQQQQQQEQQQ QQQQQEQRQQQPGEIGNGGVAVAAAAVRSAR* back to topmRNA from alignment at chr7:203059..206327- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO07G00550.1 ID=NO07G00550.1|Name=NO07G00550.1|organism=Nannochloropsis oceanica|type=mRNA|length=3269bp|location=Sequence derived from alignment at chr7:203059..206327- (Nannochloropsis oceanica) ACAGGTGCATGGACGATAATGGCTTCGTTCCCCCACACCTTGAAAGGATT
GCGTGGGAGCGGCGGCTAGTCCGTGGCTTGGCTGGGCACACATTTAGTGA
AACACTTTTGATCACGGAGCCATCGGCTTCTGATGGTGCTGATCGAGATG
ACATACGAGAGGGAAGGCAACCGCAACCGCGTCCCCCATGGCCCCTGCTA
CGACGAGATGCATCAAGAGCCTATTTGTTGCTTCGCCTCCTGTCCCATGA
CAAGCTCCATGTGGCCACGATACTGGCCTCTGAAGTTCGAGAAGACAAGG
CCACTGGCGTCATGATCCAAGAAACGGGGCCATACTATGTGGTCAAGGTG
AGTCAGAGGGAAAGGAAGGGCGGGTGGGGGAAGGGGGGAGCACAGGGTAT
CTCATAAGTTCAACCAGCTGGTGGGCAGCATTAAGGAAGAAGCCCCTTGA
CAGGGGAGGGAGGAAAGGCCCCCCGAAAGTCGTCGGAGTTTTTCCCCTGA
TTCCACCTCTAATACTATCTTACCCCTTTCCTCCCTCTTCATCGATGAAT
CACGCTCAACAGCCGTCGAAATCTTACCGCTCTACCCCATCCTATTACAC
TTACCCCCTTTGTCCCTGCCTCAATCCCTCCCTCCTTTCCTCCTTAGGTC
GTCCGCCTAGACTGCCTGGCCATCGACCCGATCGAAAACCCCTTCAACGA
AGCAGCCGCCCTCCAGCTCCTCCTACAAAACGAAGGCCTCCTTGGAACCC
TCCCGCCCTCCCTCCCTCGCCTCCATGCAGCTTTCAAAGACCAACACCAC
CTGTACCTCATGACACCCTACGCTCCTGGTGGAGACCTGTTCAACTACCT
CGCTCGTCGTCCCCCCGCCCGCCGACATCTCTCTGAACGCAAGGCCTGTG
CCTTTCTTTTGGACATCGTCGAAGCGTTGACTTACTTGAAAAAAAACGGC
ATGGCGCACAGGGACGTGTCGCTCGAAAACGTGGTCTTGGCCCTGGGCGA
GGTCATGACGGAGGAAGAGGTTTGGAGGGAGGAAGCAGAAGATTGGATTG
GGAGCGCTCCTTCGGCGCTATACCCGGTAGCAGGAGGAGGAGGAGGAGGA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTTGCAGGAGGGCAACAGCG
AAGGGTGCACGACCAGTGCGTCCTCCTCCCTGCCCCCTACCCGGAAGTCT
TGCTGGGCGAGCAAGCCTTCTTGCCGACGATGCCTCACTTCTTCCACTCC
ACAGGCTACGGGCCTGCCCCTCCTCCCGGCAGTCACGGTCCGACCCACCA
CCAGCAGGCTGGTCACGTCCCCATTACCGTTGGGCAAGAAATGCGAGCCG
CTGAAGCCTCGGCCCTTGAGCCTTCCCCCCCCCCTCAAGCCCATCACTAC
CGCCACCACTACTACAACGTTCTCCACCCTCCCTCCTCCTCCTCATCCCC
CTCCTACTCCTCCAACAGCTCTTCAGCCTCCCCTCCGCCCCACCCCTCCC
TCCCTCCCCCACCCCGCCGCCATTGGCGGTGCACCCTCATCGACCTAGGA
ATGGCTTCCCGCCTGCCCGAATCCAAAGACGGCATTAAAATTCGAAGATC
CTACCATCAAAGCAGGGGCAAACCGGGCTATGTGTCCCCCGAGATCTTCT
ACGAGCAACCTTCTGACGGGTTTTCGTCGGATATATGGTCCTTGGGCGTG
ATACTGTACACACTCTTGACCGGCCACCCGCTTTATGCCAGCCCCTGGGA
CCCGGCGTTTGAAGCCCTAGTGGGGGGAAAGACGAGGCGATTGATACACC
ATTATAAGGTAGGGTATGTGTGTGTGTGGGTGTGAGGGTGTCTGACTCTC
TCTCTCTCTTTCCCTCTCTCTCTCTTGTTCGTTGTCTCGCCTTTTCCGAA
GATCACAAACAAAGATCATACACCAAATAATCAAAATAAGTAATATAAGA
TATAGATGAACAACTAGTATGCAGTATGTATATCAGGACAAGATATACCA
AAAGTCTCACTCACGACTACCAACAAACAACGACAGCTGAAATATGGGTG
TTCCATTCACCTAACCGCTGAAGACCTCATCTGTGCAATGCTGAATCCCT
GCCCCTCCGAGCGCCCATGTCTCGCTCAAATCAAGGCCTCCGCCTGGGTC
TGTGACGTGCTTCGTGGCCGACAGGAGGAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGGAGCAGCAGCAGCAGCAGCAGCAGC
AGGAGCAGCGGCAGCAGCAGCCTGGAGAAATAGGTAATGGAGGTGTTGCA
GTAGCAGCAGCAGCAGTGAGGAGTGCTAGGTAAAGGAGGAGTATAAAAAG
GATGAAAAAAAGACGGAAGGAAAGAATTCCTGGTTCTACGACTGGAGAGG
AAATGAGGAGAGGATCGCACGACAAGGTGATGGCGGACAAGGCTTTACGC
ATTGAAAGGAAAACGGGTGACTCAAGTGAGAAAATGACAGGGGAATGTAC
TAGCACCACCGAGAGTAAACAAGCGGATAATGGATGACTGAAAGGAAACT
GTATGAGCACTTACAAGAGAGATTGAAGGGGTAATCGATGATTGAAATGT
ATGAGTTAATCGATGATTGAAATGTATGAGCAGGAAAAAAGTGAAAGGGT
ACTGGGTGATCCAGAGAGAGATTACAACGGATATGATTGGCGACATAAAG
AGAAAGTGGAAGAGTAATGGATGATCAAGAGATGGAAATAGAATATGGAT
AGGATTAGCGCCATAAAGAGAGAGAGTACACGGAACGGATTTGAAAGGAA
AAGAAAGCGAGAGGGGAATGGATTAGTAATAGAAAGAAGGAGAAAGGAAA
TGGAGCACCACAGAGATAAAGAGAAGAGGGAATGATGAGTAAGGGAGAGA
AAGCGAAAGCCGAATTTATTATTTAGATTGATTGAAATGTATGAGCACTA
AGGAGAGAACGCGAAAGGGGAATGGATGGGCAACACCAGAAAGAGCCGGC
AAATATGATATGGAAACCACGAGAAAAGCCAAAAGAAAAAAGAAATATAA
TTTTAATGCGACACCGAAAGGATTGTATAAATGAAGAGGACAGAGGCAGA
AAATGAAAGGGGAAAAGCTGACCGTGGAAAGGAGAAGGAGAAATCTACGC
TCATAAGACACCACGTTGACCACAATCATACTTGAGCCCATATTCACATC
CACACCCTCACCAAAACGACGACGAATGCAAGCACGTGCAAAAGAAAAGA
AAAACGTGCATCACTGCAA back to topCoding sequence (CDS) from alignment at chr7:203059..206327- >NO07G00550.1 ID=NO07G00550.1|Name=NO07G00550.1|organism=Nannochloropsis oceanica|type=CDS|length=1296bp|location=Sequence derived from alignment at chr7:203059..206327- (Nannochloropsis oceanica) ATGACACCCTACGCTCCTGGTGGAGACCTGTTCAACTACCTCGCTCGTCG TCCCCCCGCCCGCCGACATCTCTCTGAACGCAAGGCCTGTGCCTTTCTTT TGGACATCGTCGAAGCGTTGACTTACTTGAAAAAAAACGGCATGGCGCAC AGGGACGTGTCGCTCGAAAACGTGGTCTTGGCCCTGGGCGAGGTCATGAC GGAGGAAGAGGTTTGGAGGGAGGAAGCAGAAGATTGGATTGGGAGCGCTC CTTCGGCGCTATACCCGGTAGCAGGAGGAGGAGGAGGAGGAGCAGCAGCA GCAGCAGCAGCAGCAGCAGCAGTTGCAGGAGGGCAACAGCGAAGGGTGCA CGACCAGTGCGTCCTCCTCCCTGCCCCCTACCCGGAAGTCTTGCTGGGCG AGCAAGCCTTCTTGCCGACGATGCCTCACTTCTTCCACTCCACAGGCTAC GGGCCTGCCCCTCCTCCCGGCAGTCACGGTCCGACCCACCACCAGCAGGC TGGTCACGTCCCCATTACCGTTGGGCAAGAAATGCGAGCCGCTGAAGCCT CGGCCCTTGAGCCTTCCCCCCCCCCTCAAGCCCATCACTACCGCCACCAC TACTACAACGTTCTCCACCCTCCCTCCTCCTCCTCATCCCCCTCCTACTC CTCCAACAGCTCTTCAGCCTCCCCTCCGCCCCACCCCTCCCTCCCTCCCC CACCCCGCCGCCATTGGCGGTGCACCCTCATCGACCTAGGAATGGCTTCC CGCCTGCCCGAATCCAAAGACGGCATTAAAATTCGAAGATCCTACCATCA AAGCAGGGGCAAACCGGGCTATGTGTCCCCCGAGATCTTCTACGAGCAAC CTTCTGACGGGTTTTCGTCGGATATATGGTCCTTGGGCGTGATACTGTAC ACACTCTTGACCGGCCACCCGCTTTATGCCAGCCCCTGGGACCCGGCGTT TGAAGCCCTAGTGGGGGGAAAGACGAGGCGATTGATACACCATTATAAGC TGAAATATGGGTGTTCCATTCACCTAACCGCTGAAGACCTCATCTGTGCA ATGCTGAATCCCTGCCCCTCCGAGCGCCCATGTCTCGCTCAAATCAAGGC CTCCGCCTGGGTCTGTGACGTGCTTCGTGGCCGACAGGAGGAGCAGCAGC AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGCAGCAGCAG CAGCAGCAGCAGCAGGAGCAGCGGCAGCAGCAGCCTGGAGAAATAGGTAA TGGAGGTGTTGCAGTAGCAGCAGCAGCAGTGAGGAGTGCTAGGTAA back to top
|