NO05G03660.2, NO05G03660.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G03660.2
Unique NameNO05G03660.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1854
Alignment locationchr5:961270..963327 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:961270..963327 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO05G03660.2 vs.
Match: XP_005853652.1 (hypothetical protein NGA_0037902, partial [Nannochloropsis gaditana CCMP526]; EKU22710.1 hypothetical protein NGA_0037902, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 248.8 bits (634), Expect = 1.400e-62
Identity = 122/195 (62.56%), Postives = 147/195 (75.38%), Query Frame = 0 
Query:   11 SISAAKDIADAAASGDKASATASAAAPKKSSALEQERKKSSRKRAPVDYNEERVVVTGEEAVAEQSKNKKPKGGAPQIFSGMQPLPTRDAAGKLHFADHPDFTPNMTPKEVLRAGSFGGGYFRPIHCTVNEQDFKDAHKEFPKDWFEGLDVGRMITSKTYRADINTFGVKCGGSLEMWQSSGWITAIDPYGAFQW 206
            S S++K  A+A A     S      A + + +  + ++KSSRKR PVDYNEE VVV  E   +E +KNKKP+   P++FS  Q  P+RD+ G LHF DHP+F PN+TPKEVLRAGSFGGGYFRPIH +V  +D+ DAHKEFP DWFEGLD+ RMITSKTYR DINT+GVKCGGSLEMW+SSGWIT +DPYGAFQW
Sbjct:   80 SSSSSKKGAEAVAK----SIQDPKPAKESTDSSSKNQRKSSRKRDPVDYNEEHVVVQEEAGASETTKNKKPRRDTPKVFSERQQEPSRDSKGVLHFKDHPEFLPNLTPKEVLRAGSFGGGYFRPIHSSVTGEDYSDAHKEFPSDWFEGLDMKRMITSKTYRPDINTYGVKCGGSLEMWESSGWITPVDPYGAFQW 270
The following BLAST results are available for this feature:
BLAST of NO05G03660.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853652.11.400e-6262.56hypothetical protein NGA_0037902, partial [Nannoch... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G03660NO05G03660Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G03660.2NO05G03660.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G03660.2.cds1NO05G03660.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G03660.2 ID=NO05G03660.2|Name=NO05G03660.2|organism=Nannochloropsis oceanica|type=mRNA|length=1854bp
TAGATCGGTGTCTTGTTGGGATTCCGTCCTGGGGCGTACGATTTTGGTGT
ATGTATGCGTGAAAGGTGGCGCCTGCGTCCCCAATAACCAGTGTCTGGGT
CCAACAGGCAATGCTAGCCTTGTCTAGGATGACAACGCTCTCGCACAGGG
TGAATTAAATGTGCGCTTGGCTTTCCTTCAAGTGTATTGCGTTGGGGGCA
GAGACGGCTGGTCAATGAAATTACCCATGGTGTGTATGTTCAATTAATAC
AAAGCAGGGTCACCCATCCTCGCTGTTGCACGCAACACAATGAGCCCGAA
CACACAACAAAACAAACCACCCAGGCTAATTACACGGTATCTATACATCC
ACCACAGGTACTATCATATTTTCCACAATTTTCTGTCGCCTTTCTCACAC
TGGGACGCCCCGTGAGCTTTGCCGCCCTTCTCCTCCTCGTCGGTCGTCCG
TTGAGGCATACGTCAGAACTTCCAGCACATACTGCATTCGTCCCCACGCC
TGCGCCTTCCTCCATGTCATCCCCGGCCAAATTGCTAAAGAAGAGCATTT
CTGCCGCCAAAGACATAGCCGATGCGGCCGCCTCGGGAGACAAAGCGTCT
GCCACTGCCTCCGCCGCGGCCCCAAAGAAATCATCTGCGTTGGAGCAGGA
ACGAAAGAAGTCCTCCCGCAAGCGCGCCCCAGTTGATTATAACGAGGAGC
GTGTCGTTGTCACGGGAGAAGAGGCCGTCGCCGAGCAAAGCAAGAATAAA
AAGCCTAAGGGCGGCGCCCCCCAAATTTTTTCTGGTATGCAGCCTCTGCC
CACGCGAGACGCCGCTGGCAAGTTGCACTTTGCTGATCACCCAGACTTTA
CCCCGAATATGACGCCCAAGGAGGTGTTGCGCGCAGGAAGCTTTGGTGGG
GGATATTTTCGTCCTATTCACTGCACGGTAAATGAACAGGATTTCAAGGA
TGCGCACAAAGAATTTCCCAAGGATTGGTTCGAGGGTTTGGACGTCGGGC
GGATGATTACCTCCAAGACGTATCGCGCGGACATCAATACGTTCGGGGTA
AAGTGTGGGGGAAGCTTGGAGATGTGGCAGTCGAGTGGATGGATTACGGC
AATTGATCCCTATGGCGCGTTTCAATGGTGAGTGAGGGTGGGTAGGTGTT
AAGGAGGGAGAGAGGGAGAGATGGAGGGAAGGGTGAAATATGCCCTTGCG
TGGTTGTGAGAATTCATGTCCTGCTGAATGACTCACTCCCTTTCTTCTCT
TCCTGGCCACCAAAAAGGTATTGCCGTTTCTATCTAGGCCGGCGGTCGGA
AGACGACGCCCGTCAGATCTCGCGTTTCAACCAGGTGATGGGTCCCACGG
GTCGCTTTCGCACTAATTTGATGAACCAAATCATCCGCAAAAATACGCGA
TGGGACGATGTGAATGTGTCACCGGTCATTCGACAGACGTTACAGCATTG
GGGGTATCGATTGACAGAGGCAGACTTCAAGGCTCACTGCAAGAAGAAGG
GCTACAAGGTTCCGGGGTAAACCGTTAACAGGAGGAGCGGAAATGAAGCG
TTGACAAGTTAGCGTCAGCGGGACTGAGGCGTTGAATCGGGCCGAAGCGA
CCGGGGAGTTGGAGAGAGGCGAAAGAAGAGAGTTACCGAGACAAGTCCAT
TTATCCGAACCTCACGAAAGCTTGGCTGCAATCATTCAAGCGGACAGAGA
CAAGGGAGAAAGAGAGAGAGAGAACGAATGGAAGTAGAAAGAAGCACAAG
CACACAGTCATTTCTTTCCCCCAAACACATGACGAAAAAAGGGGTCCGGC
ATAAAGAAGATATCACACCAGCCGGAAGGCCTACCGTACGCATTTAGGAA
CAAG
back to top

protein sequence of NO05G03660.2

>NO05G03660.2-protein ID=NO05G03660.2-protein|Name=NO05G03660.2|organism=Nannochloropsis oceanica|type=polypeptide|length=206bp
MSSPAKLLKKSISAAKDIADAAASGDKASATASAAAPKKSSALEQERKKS
SRKRAPVDYNEERVVVTGEEAVAEQSKNKKPKGGAPQIFSGMQPLPTRDA
AGKLHFADHPDFTPNMTPKEVLRAGSFGGGYFRPIHCTVNEQDFKDAHKE
FPKDWFEGLDVGRMITSKTYRADINTFGVKCGGSLEMWQSSGWITAIDPY
GAFQW*
back to top

mRNA from alignment at chr5:961270..963327-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G03660.2 ID=NO05G03660.2|Name=NO05G03660.2|organism=Nannochloropsis oceanica|type=mRNA|length=2058bp|location=Sequence derived from alignment at chr5:961270..963327- (Nannochloropsis oceanica)
TAGATCGGTGTCTTGTTGGGATTCCGTCCTGGGGCGTACGATTTTGGTGT
ATGTATGCGTGAAAGGTGGCGCCTGCGTCCCCAATAACCAGTGTCTGGGT
CCAACAGGCAATGCTAGCCTTGTCTAGGATGACAACGCTCTCGCACAGGG
TGAATTAAATGTGCGCTTGGCTTTCCTTCAAGTGTATTGCGTTGGGGGCA
GAGACGGCTGGTCAATGAAATTACCCATGGTGTGTATGTTCAATTAATAC
AAAGCAGGGTCACCCATCCTCGCTGTTGCACGCAACACAATGAGCCCGAA
CACACAACAAAACAAACCACCCAGGCTAATTACACGGTATCTATACATCC
ACCACAGGTACTATCATATTTTCCACAATTTTCTGTCGCCTTTCTCACAC
TGGGACGCCCCGTGAGCTTTGCCGCCCTTCTCCTCCTCGTCGGTCGTCCG
TTGAGGCATACGTCAGAACTTCCAGCACATACTGCATTCGTCCCCACGCC
TGCGCCTTCCTCCATGTCATCCCCGGCCAAATTGCTAAAGAAGAGCATTT
CTGCCGCCAAAGACATAGCCGATGCGGCCGCCTCGGGAGACAAAGCGTCT
GCCACTGCCTCCGCCGCGGCCCCAAAGAAATCATCTGCGTTGGAGCAGGA
ACGAAAGAAGTCCTCCCGCAAGCGCGCCCCAGTTGATTATAACGAGGAGC
GTGTCGTTGTCACGGGAGAAGAGGCCGTCGCCGAGCAAAGCAAGAATAAA
AAGCCTAAGGGCGGCGCCCCCCAAATTTTTTCTGGTATGCAGCCTCTGCC
CACGCGAGACGCCGCTGGCAAGTTGCACTTTGCTGATCACCCAGACTTTA
CCCCGAATATGACGCCCAAGGAGGTGTTGCGCGCAGGAAGCTTTGGTGGG
GGATATTTTCGTCCTATTCACTGCACGGTAAATGAACAGGATTTCAAGGA
TGCGCACAAAGAATTTCCCAAGGATTGGTTCGAGGGTTTGGACGTCGGGC
GGATGATTACCTCCAAGACGTATCGCGCGGACATCAATACGTTCGGGGTA
AAGTGTGGGGGAAGCTTGGAGATGTGGCAGTCGAGTGGATGGATTACGGC
AATTGATCCCTATGGCGCGTTTCAATGGTGAGTGAGGGTGGGTAGGTGTT
AAGGAGGGAGAGAGGGAGAGATGGAGGGAAGGGTGAAATATGCCCTTGCG
TGGTTGTGAGAATTCATGTCCTGCTGAATGACTCACTCCCTTTCTTCTCT
TCCTGGCCACCAAAAAGGTATTGCCGTTTCTATCTAGGCCGGCGGTCGGA
AGACGACGCCCGTCAGATCTCGCGTTTCAACCAGGTGATGGGTCCCACGG
GTCGCTTTCGCACTAATTTGATGAACCAAATCATCCGCAAAAATACGCGA
TGGGACGATGTGAATGTGTCACCGGTCATTCGACAGACGTTACAGCATTG
GGGGTATCGATTGACAGAGGTAGGACACGCATCAACACAGCTCCCTCTTC
CCTTCTTTCCAGTCGCCGTACAAAGGGCAGCTTACTACACACCTCCGCAA
CCCTTGAAGATTACCATGTCAAATCCGCATTGCTGTATAAACTCACTTAT
CTCTGCATGCTCTGGTGTGTGTATGCGTCTCTTTTCTCCTCCTCCTGTCC
TCTACTCTTCCTCGTTGCCACAGGCAGACTTCAAGGCTCACTGCAAGAAG
AAGGGCTACAAGGTTCCGGGGTAAACCGTTAACAGGAGGAGCGGAAATGA
AGCGTTGACAAGTTAGCGTCAGCGGGACTGAGGCGTTGAATCGGGCCGAA
GCGACCGGGGAGTTGGAGAGAGGCGAAAGAAGAGAGTTACCGAGACAAGT
CCATTTATCCGAACCTCACGAAAGCTTGGCTGCAATCATTCAAGCGGACA
GAGACAAGGGAGAAAGAGAGAGAGAGAACGAATGGAAGTAGAAAGAAGCA
CAAGCACACAGTCATTTCTTTCCCCCAAACACATGACGAAAAAAGGGGTC
CGGCATAAAGAAGATATCACACCAGCCGGAAGGCCTACCGTACGCATTTA
GGAACAAG
back to top

Coding sequence (CDS) from alignment at chr5:961270..963327-

>NO05G03660.2 ID=NO05G03660.2|Name=NO05G03660.2|organism=Nannochloropsis oceanica|type=CDS|length=618bp|location=Sequence derived from alignment at chr5:961270..963327- (Nannochloropsis oceanica)
ATGTCATCCCCGGCCAAATTGCTAAAGAAGAGCATTTCTGCCGCCAAAGA
CATAGCCGATGCGGCCGCCTCGGGAGACAAAGCGTCTGCCACTGCCTCCG
CCGCGGCCCCAAAGAAATCATCTGCGTTGGAGCAGGAACGAAAGAAGTCC
TCCCGCAAGCGCGCCCCAGTTGATTATAACGAGGAGCGTGTCGTTGTCAC
GGGAGAAGAGGCCGTCGCCGAGCAAAGCAAGAATAAAAAGCCTAAGGGCG
GCGCCCCCCAAATTTTTTCTGGTATGCAGCCTCTGCCCACGCGAGACGCC
GCTGGCAAGTTGCACTTTGCTGATCACCCAGACTTTACCCCGAATATGAC
GCCCAAGGAGGTGTTGCGCGCAGGAAGCTTTGGTGGGGGATATTTTCGTC
CTATTCACTGCACGGTAAATGAACAGGATTTCAAGGATGCGCACAAAGAA
TTTCCCAAGGATTGGTTCGAGGGTTTGGACGTCGGGCGGATGATTACCTC
CAAGACGTATCGCGCGGACATCAATACGTTCGGGGTAAAGTGTGGGGGAA
GCTTGGAGATGTGGCAGTCGAGTGGATGGATTACGGCAATTGATCCCTAT
GGCGCGTTTCAATGGTGA
back to top
Synonyms
Publications