NO05G00780.1, NO05G00780.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G00780.1
Unique NameNO05G00780.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1341
Alignment locationchr5:251206..252546 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:251206..252546 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G00780.1 vs.
Match: EWM28146.1 (hypothetical protein Naga_100004g5 [Nannochloropsis gaditana])

HSP 1 Score: 434.9 bits (1117), Expect = 3.100e-118
Identity = 259/395 (65.57%), Postives = 293/395 (74.18%), Query Frame = 0 
Query:   22 VELHAEAVKRHVERHWDRFKDRPDPRAWLTELREMCETDSEREDEDEFVDVMALEKRCCCLWCHAEKGLEDEFCWNARCPASPLFSETAALVMPGGGAPPGPPSLPVPVAWMQSAAGVRKIIKRKRTLKAEAVHLPYPPAVAASMKADPLSSASFSSATASTSSSIRELRRVKKLKGLDHGRFSEGRKVFPECGFLAHAPVNPQDHVLFNTHAYVKFLDGKAVALAAAAAAAAAAAAAAAAAAAATDRERGQEMHERG--QGGGKG-----NLLFSLDPALYRWQVAEAMRKEKEAQEAAAKAAAAAAEAAAAAAAEARARYVEQQQQIRSAMVVEAAALAPREATAAAALVESVMNVPVGPSSGGSLAAIRAGWVG-----EGEKEGGGGGGGG 405
            VELHAEA+KRHVERHW+RFKDRPDPR+WL E+ ++C+TDSEREDE+E+ DV+ALE RCCCLWCHAEK LED +CWN  CPASPLFSE AAL MPGGGA P PPSLPVP  WM SAAGV+KIIKRKR +  E   LPY PA AA++KA PL  A    A A    SI E RRVK+LKG DH RF+EG+KV P CGFLAHAPV+PQ HVLFNTHAYVKFL+GKA+                        R+R  E  E G  +GGG+G        FSLDPALYRWQVAEA R+E+EAQEAAAKAA AAA+AAA+AAAEARA YVE+QQ+IRSAMVVEAAALAPREATAAAALV S + +P GPS GGSLAAIRA W       +GEK+ GG    G
Sbjct:  169 VELHAEAIKRHVERHWERFKDRPDPRSWLEEMHDVCDTDSEREDEEEYRDVLALESRCCCLWCHAEKALEDTYCWNVACPASPLFSERAALPMPGGGASPAPPSLPVPAHWMSSAAGVQKIIKRKRAVAEEEALLPYTPAEAAALKAHPLGHAHSPPAYA----SIGERRRVKRLKGSDHSRFAEGKKVMPACGFLAHAPVHPQGHVLFNTHAYVKFLEGKAI-------------------PTGEGRKRMGEGEELGARRGGGRGERRGCRASFSLDPALYRWQVAEAARQEQEAQEAAAKAAEAAAKAAASAAAEARALYVEEQQRIRSAMVVEAAALAPREATAAAALVGSGICMPGGPSVGGSLAAIRAVWTNVDNGEKGEKDKGGKARNG 540
The following BLAST results are available for this feature:
BLAST of NO05G00780.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28146.13.100e-11865.57hypothetical protein Naga_100004g5 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G00780NO05G00780Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G00780.1NO05G00780.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G00780.1.cds1NO05G00780.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G00780.1 ID=NO05G00780.1|Name=NO05G00780.1|organism=Nannochloropsis oceanica|type=mRNA|length=1341bp
ATGGATGGTCTGGCCCTGCTGGCTGGGAGCTCGACGACGGCGGCACGGGT
GCCGTTGCGGCAGGTGGAACTGCATGCAGAAGCGGTGAAAAGGCATGTGG
AGCGGCACTGGGATAGGTTCAAGGACCGGCCTGACCCGAGGGCATGGCTC
ACGGAGCTGAGGGAGATGTGCGAGACTGACTCGGAGAGGGAGGACGAGGA
TGAATTCGTGGATGTCATGGCCTTAGAAAAACGGTGTTGTTGCCTATGGT
GCCACGCCGAAAAAGGCTTGGAGGATGAGTTTTGTTGGAATGCCCGCTGT
CCTGCTTCCCCTCTCTTCAGCGAAACGGCCGCCTTGGTGATGCCGGGTGG
TGGCGCTCCCCCGGGCCCTCCTTCCCTACCTGTCCCCGTGGCATGGATGC
AGTCTGCGGCGGGTGTGCGGAAGATAATCAAACGAAAACGGACCCTTAAA
GCGGAAGCGGTCCATCTTCCCTACCCTCCCGCCGTGGCTGCTTCCATGAA
AGCTGACCCGCTTTCCTCCGCCTCCTTCTCCTCCGCCACCGCCTCCACAT
CCTCCTCGATAAGAGAGCTGCGACGAGTGAAGAAGCTGAAGGGGTTGGAT
CATGGGCGCTTTTCGGAGGGAAGGAAGGTTTTCCCCGAATGCGGCTTCTT
GGCCCATGCGCCCGTTAACCCTCAAGACCATGTCTTGTTCAACACGCACG
CCTATGTCAAATTCTTGGACGGCAAGGCTGTGGCCCTGGCAGCAGCAGCA
GCAGCAGCAGCAGCGGCAGCGGCAGCGGCAGCGGCAGCGGCGGCGGCGAC
GGACAGGGAAAGGGGTCAGGAGATGCACGAGCGGGGCCAGGGAGGGGGAA
AGGGGAACTTGTTGTTTTCTCTGGACCCGGCCTTATACCGGTGGCAGGTG
GCCGAAGCCATGCGGAAGGAGAAGGAGGCACAAGAAGCAGCGGCAAAGGC
AGCAGCAGCGGCCGCTGAAGCGGCGGCGGCGGCAGCGGCGGAAGCACGGG
CACGGTATGTTGAGCAGCAGCAACAGATTCGGTCTGCGATGGTGGTGGAG
GCGGCGGCGCTGGCGCCAAGGGAGGCAACAGCAGCGGCAGCACTGGTCGA
GTCAGTGATGAATGTCCCCGTTGGTCCCTCCTCAGGGGGGTCGCTGGCGG
CCATCAGGGCGGGTTGGGTGGGTGAGGGGGAGAAGGAGGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGAGG
AGGAGGAGGAGGAGGAGGTGGAGGAGGGGCAGGGGGTTTGA
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protein sequence of NO05G00780.1

>NO05G00780.1-protein ID=NO05G00780.1-protein|Name=NO05G00780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=447bp
MDGLALLAGSSTTAARVPLRQVELHAEAVKRHVERHWDRFKDRPDPRAWL
TELREMCETDSEREDEDEFVDVMALEKRCCCLWCHAEKGLEDEFCWNARC
PASPLFSETAALVMPGGGAPPGPPSLPVPVAWMQSAAGVRKIIKRKRTLK
AEAVHLPYPPAVAASMKADPLSSASFSSATASTSSSIRELRRVKKLKGLD
HGRFSEGRKVFPECGFLAHAPVNPQDHVLFNTHAYVKFLDGKAVALAAAA
AAAAAAAAAAAAAAAATDRERGQEMHERGQGGGKGNLLFSLDPALYRWQV
AEAMRKEKEAQEAAAKAAAAAAEAAAAAAAEARARYVEQQQQIRSAMVVE
AAALAPREATAAAALVESVMNVPVGPSSGGSLAAIRAGWVGEGEKEGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGEEEEEEEVEEGQGV*
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mRNA from alignment at chr5:251206..252546+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G00780.1 ID=NO05G00780.1|Name=NO05G00780.1|organism=Nannochloropsis oceanica|type=mRNA|length=1341bp|location=Sequence derived from alignment at chr5:251206..252546+ (Nannochloropsis oceanica)
ATGGATGGTCTGGCCCTGCTGGCTGGGAGCTCGACGACGGCGGCACGGGT
GCCGTTGCGGCAGGTGGAACTGCATGCAGAAGCGGTGAAAAGGCATGTGG
AGCGGCACTGGGATAGGTTCAAGGACCGGCCTGACCCGAGGGCATGGCTC
ACGGAGCTGAGGGAGATGTGCGAGACTGACTCGGAGAGGGAGGACGAGGA
TGAATTCGTGGATGTCATGGCCTTAGAAAAACGGTGTTGTTGCCTATGGT
GCCACGCCGAAAAAGGCTTGGAGGATGAGTTTTGTTGGAATGCCCGCTGT
CCTGCTTCCCCTCTCTTCAGCGAAACGGCCGCCTTGGTGATGCCGGGTGG
TGGCGCTCCCCCGGGCCCTCCTTCCCTACCTGTCCCCGTGGCATGGATGC
AGTCTGCGGCGGGTGTGCGGAAGATAATCAAACGAAAACGGACCCTTAAA
GCGGAAGCGGTCCATCTTCCCTACCCTCCCGCCGTGGCTGCTTCCATGAA
AGCTGACCCGCTTTCCTCCGCCTCCTTCTCCTCCGCCACCGCCTCCACAT
CCTCCTCGATAAGAGAGCTGCGACGAGTGAAGAAGCTGAAGGGGTTGGAT
CATGGGCGCTTTTCGGAGGGAAGGAAGGTTTTCCCCGAATGCGGCTTCTT
GGCCCATGCGCCCGTTAACCCTCAAGACCATGTCTTGTTCAACACGCACG
CCTATGTCAAATTCTTGGACGGCAAGGCTGTGGCCCTGGCAGCAGCAGCA
GCAGCAGCAGCAGCGGCAGCGGCAGCGGCAGCGGCAGCGGCGGCGGCGAC
GGACAGGGAAAGGGGTCAGGAGATGCACGAGCGGGGCCAGGGAGGGGGAA
AGGGGAACTTGTTGTTTTCTCTGGACCCGGCCTTATACCGGTGGCAGGTG
GCCGAAGCCATGCGGAAGGAGAAGGAGGCACAAGAAGCAGCGGCAAAGGC
AGCAGCAGCGGCCGCTGAAGCGGCGGCGGCGGCAGCGGCGGAAGCACGGG
CACGGTATGTTGAGCAGCAGCAACAGATTCGGTCTGCGATGGTGGTGGAG
GCGGCGGCGCTGGCGCCAAGGGAGGCAACAGCAGCGGCAGCACTGGTCGA
GTCAGTGATGAATGTCCCCGTTGGTCCCTCCTCAGGGGGGTCGCTGGCGG
CCATCAGGGCGGGTTGGGTGGGTGAGGGGGAGAAGGAGGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGAGG
AGGAGGAGGAGGAGGAGGTGGAGGAGGGGCAGGGGGTTTGA
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Coding sequence (CDS) from alignment at chr5:251206..252546+

>NO05G00780.1 ID=NO05G00780.1|Name=NO05G00780.1|organism=Nannochloropsis oceanica|type=CDS|length=1341bp|location=Sequence derived from alignment at chr5:251206..252546+ (Nannochloropsis oceanica)
ATGGATGGTCTGGCCCTGCTGGCTGGGAGCTCGACGACGGCGGCACGGGT
GCCGTTGCGGCAGGTGGAACTGCATGCAGAAGCGGTGAAAAGGCATGTGG
AGCGGCACTGGGATAGGTTCAAGGACCGGCCTGACCCGAGGGCATGGCTC
ACGGAGCTGAGGGAGATGTGCGAGACTGACTCGGAGAGGGAGGACGAGGA
TGAATTCGTGGATGTCATGGCCTTAGAAAAACGGTGTTGTTGCCTATGGT
GCCACGCCGAAAAAGGCTTGGAGGATGAGTTTTGTTGGAATGCCCGCTGT
CCTGCTTCCCCTCTCTTCAGCGAAACGGCCGCCTTGGTGATGCCGGGTGG
TGGCGCTCCCCCGGGCCCTCCTTCCCTACCTGTCCCCGTGGCATGGATGC
AGTCTGCGGCGGGTGTGCGGAAGATAATCAAACGAAAACGGACCCTTAAA
GCGGAAGCGGTCCATCTTCCCTACCCTCCCGCCGTGGCTGCTTCCATGAA
AGCTGACCCGCTTTCCTCCGCCTCCTTCTCCTCCGCCACCGCCTCCACAT
CCTCCTCGATAAGAGAGCTGCGACGAGTGAAGAAGCTGAAGGGGTTGGAT
CATGGGCGCTTTTCGGAGGGAAGGAAGGTTTTCCCCGAATGCGGCTTCTT
GGCCCATGCGCCCGTTAACCCTCAAGACCATGTCTTGTTCAACACGCACG
CCTATGTCAAATTCTTGGACGGCAAGGCTGTGGCCCTGGCAGCAGCAGCA
GCAGCAGCAGCAGCGGCAGCGGCAGCGGCAGCGGCAGCGGCGGCGGCGAC
GGACAGGGAAAGGGGTCAGGAGATGCACGAGCGGGGCCAGGGAGGGGGAA
AGGGGAACTTGTTGTTTTCTCTGGACCCGGCCTTATACCGGTGGCAGGTG
GCCGAAGCCATGCGGAAGGAGAAGGAGGCACAAGAAGCAGCGGCAAAGGC
AGCAGCAGCGGCCGCTGAAGCGGCGGCGGCGGCAGCGGCGGAAGCACGGG
CACGGTATGTTGAGCAGCAGCAACAGATTCGGTCTGCGATGGTGGTGGAG
GCGGCGGCGCTGGCGCCAAGGGAGGCAACAGCAGCGGCAGCACTGGTCGA
GTCAGTGATGAATGTCCCCGTTGGTCCCTCCTCAGGGGGGTCGCTGGCGG
CCATCAGGGCGGGTTGGGTGGGTGAGGGGGAGAAGGAGGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGAGG
AGGAGGAGGAGGAGGAGGTGGAGGAGGGGCAGGGGGTTTGA
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Synonyms
Publications