Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr4 genome chr4:1480892..1484643 -
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G05250.1 vs.
Match: EWM28900.1 (hypothetical protein Naga_100822g1 [Nannochloropsis gaditana])
HSP 1 Score: 229.2 bits (583), Expect = 4.300e-56
Identity = 145/251 (57.77%), Postives = 159/251 (63.35%), Query Frame = 0
Query: 199 GVKWRRGKWTPEEEAYVSRVTEAFHQGLLPLAAGTTLRSYLSDKLNCDPMRITKKFSGEGSIGKCIFHPCVPSQPLKLAETMMELDRLEAVWKHRLEEIRAVEFEFQQSASMSSHGSA---SFPPSLHPSPLAGPPPPYYYMQHYPPLLPPFLRPLLPLARSTTSRTQHTAALRLLLRALLPLPPTL----------PPAIPTLPLLILPLFLTPLTQWNAPTGSLSPPSAPVSPS-RGPPPPSPSSTPAP 436
G KWRRGKWTPEEE YV+RVTEAFHQGLLPLAAGTTLRSYL+DKLNCDPMRITKKFSG GSIGKCIFHPC+P QPLK+AE M+ELDRLEA+W+ RLEEIRAVE+EFQQSAS+SS GSA SFPPSL PS PP +Y QHYPP P P P H A +PP+ PP++P P L P SL PS P S S PP PS PAP
Sbjct: 152 GGKWRRGKWTPEEEVYVNRVTEAFHQGLLPLAAGTTLRSYLADKLNCDPMRITKKFSGVGSIGKCIFHPCMPPQPLKMAEAMVELDRLEAIWRRRLEEIRAVEYEFQQSASLSSQGSATSPSFPPSLGPS-----LPPSFYQQHYPPQQYPQHHPPYPYHPQHHPHGPHPPA--------TGVPPSSYPDSCGAWQGPPSLPRAPPL--------------PPSSL--PSEPTSSSVLSLPPGLPSGAPAP 373
The following BLAST results are available for this feature:
BLAST of NO04G05250.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
500 1000 1500 2000 2500 3000 Expect = 4.30e-56 / Id = 57.77 Sequence EWM28900.1
Match Name E-value Identity Description
EWM28900.1 4.300e-56 57.77 hypothetical protein Naga_100822g1 [Nannochloropsi... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO04G05250.1 ID=NO04G05250.1|Name=NO04G05250.1|organism=Nannochloropsis oceanica|type=mRNA|length=3146bp back to top protein sequence of NO04G05250.1
>NO04G05250.1-protein ID=NO04G05250.1-protein|Name=NO04G05250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=746bp back to top mRNA from alignment at chr4:1480892..1484643-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G05250.1 ID=NO04G05250.1|Name=NO04G05250.1|organism=Nannochloropsis oceanica|type=mRNA|length=3752bp|location=Sequence derived from alignment at chr4:1480892..1484643- (Nannochloropsis oceanica)ATGTCCTTCCCTTCCTCCCCTGTGCGGAGTTATCCTCCAGGC
AATGGCGGGTCTCAGCATCATCAAGAGCAATATCAGCAGCAGCAGCAGCA
AATGAATGGTACTACTGCTGAGGGAGGAGTGACAGCAGCAGGAGCCGGAG
CAGGAACTGGACTCGGAGGCGGACGAGAAGGAGGAAACGGATCATCCTTG
CCTCCATCTCCATCTCGCGGACTCCCCGCCCTGTACTCTGTAAAACAAGC
CCCCATGCCCTCACCGCAGCAGGGGACCGACGTG GTACGTAGTGAGGGAT
AGAAGAGATGGAGATGTGGGAAGTGGGATAGCCTAGCGTCTTCTTCGCCA
ATTTGATCTTATCCCCCACCGATGCCTCCGTCCTGCTCTCCCTCTCTCAG
TCTCACACTCCGTCCTGCCCTTCCTTTCATCCTCGCACGCTCATTTCGTC
CTTCCTCTCGTTTCTTCCTTGCGTCCACCACAGGGCTATCCCCAGCATCT
TAGCCAGAGTTGTAGCACAAGCAGCAGCGGCAGCACAGGGACCCGGGGCA
GCACCCACAGTCACGGCAGCCGCGGTTCTGCTCATGGAGAGCAAGAAAGA
GGTGGAGGGCAATACACATCTCCCACGCAGCAGCAGCAGCAGCAACCACA
GTACAGCGGTAGTGTCAACCCCGACAAGCAAGACCGAGGAGCAGCAGCAA
CTCCAGGAGGAGCAGCCGCAGCGTGGGCCGTGGCCGTTGAACGGGAGCGA
GCCCGAGAGAACTTCATGAAGCGAGACCAATTCGTGAAGAATCCACCCCC
GGGTGTCAAATGGCGCCGGGGAAAATGGACCCCTGAAGAAGAGGCTTACG
TGAGCCGAGTCACGGAGGCCTTCCACCAGGGCCTGCTGCCCCTCGCGGCC
GGCACCACCCTCCGGTCCTACCTGTCAGACAAGCTCAACTGCGACCCCAT
GCGCATCACCAAGAAGTTCTCTGGCG GTATGCATGTCGCCTGCCCTCCCT
CCTTTCCTCCCTCCCTCGGCACGCGTCTCGAAACTTAAAGCTCACCCCTC
TCTTTCCCTTCTCTCGATCCCTCCCCTCCTCCCTCCACGCAGAGGGCTCC
ATCGGCAAGTGCATTTTCCATCCCTGCGTGCCCTCGCAGCCCCTCAAACT
GGCGGAGACCATGATGGAGCTTGACCGGCTGGAG GTACGGAGGGAGGGAG
GAAATAACAGGATGGGAGCAGGGTAACGCACGGACCAAGGGAAGGAACTT
ATCGTCTTCCCTCCCCTCCCTCCCTCCCTCATTTATTTTCCTTCTTCAGG
CCGTCTGGAAGCACCGGCTTGAAGAGATCCGAGCCGTTGAATTCGAGTTC
CAACAATCCGCCTCCATGTCTTCCCACGGCTCCGCCTCCTTCCCGCCCTC
TCTCCATCCCTCCCCCCTCGCCGGCCCTCCACCTCCCTACTACTATATGC
AGCACTACCCCCCCCTCCTTCCTCCCTTCCTCCGCCCCCTCCTTCCGCTG
GCCCGTTCCACCACCAGCAGAACCCAGCATACGGCTGCGCTGCGGTTGCT
GCTCCGCGCGCTCCTCCCCCTTCCTCCTACCCTCCCTCCAGCTATCCCGA
CCCTCCCACTTCTCATCCTCCCCCTCTTCCTCACTCCCCTCACC GTCCGT
CCCAAGCCGTCTTTAGCTACGGTCAGCAGCCCTCCCTCCCTTCCTCCTTT
CCTCCTCACCAGCAGTGGAATGCCCCCACGGGCTCTCTTTCTCCACCATC
AGCTCCTGTTTCTCCTTCCCGCGGGCCCCCTCCTCCTTCCCCCTCCTCCA
CCCCTGCTCCCTTCCCCTCCGTCCCATTCACCTTCTCAGATAACCACCAT
GAGGCACAGATGGTGCAGCCTCAGTCGCCGCGCTCCGCCGAG GTACGTGG
TCCCTCTCTCCCCTCCCTCCCTCCCCTCCCTGCGTCTAGTACGACCAGTC
ACCCCCTCCTCTCCCTCCCCTCTCTCTCAATCACTCCCTCCCTCCCTCAG
GCCCGCGCCTGGCTCCATCGGTCCCGGGATCTGCTCTCTCTCCCCCACGG
CACGACCCGCATCGAGGCCTTGGATTCCTTGATTAAAGAGGGGGAAAAGC
TTAATCTGGCCGCCACCTCTCCCTCCCTTCCTTCCCCCGCCCGTGGGGGT
ATGGAGAAGGAGGAGGGACAGCAGCAGGAGCAGCAACAAGAGCAGCAGCA
ACAACAACCACTAGCACCACCACCACCACAACAACAACAACAACCACAAC
AACCACGCCCACCACCACAACAACCACAACAACCTCAAGAACAACAACAA
CAACAACAACAACAACAACAACAACCAAAGACGCAGCAGCAGCAGCAGCA
GCAGGGGACGAAGAGGCCGCGAGCGGAGGAGAAGAAGGAATCCAGGGAAG
AAGAGAGCGAAACATGGGTAGCTGCTACTCCTGCAGCAGCTACAATGGCC
GCGGCAGCTGGTGCGACCAACGCGTTACACGAAAATCAGCAGCAGCAGCC
GCAGCAGCCCGTCTCGTCTCACTCGGTGCAAAGAAGGAGTGAGGAGAAGA
AGGAAGGGGACGAGGAAGAGGGGAAGCCGACGATACTCCAGACATTTCTT
CCCTCGTCCTCGTCCTCGTCCTCCTCCACGGCCACTGTTGTGGCTGGTGA
GGCGGAAGATGAGGAGGAGGGGGAGGGGGGAACGAGGGAGATGGATAAGG
AGGATGAGGGAGCGGAGGGGTTGTTGATGCTTAAGTTTCTGCGGGAGCGC
ACCCACAGTCCGGTGCTGGCGAAGGAGAGGGAAAGAAAGAGGGAGAGGAG
GGAGGAGGAAGAGGACTCACAACCCGTGGTACCCGTGGCGGCTATCTTGT
GA back to top Coding sequence (CDS) from alignment at chr4:1480892..1484643-
>NO04G05250.1 ID=NO04G05250.1|Name=NO04G05250.1|organism=Nannochloropsis oceanica|type=CDS|length=2238bp|location=Sequence derived from alignment at chr4:1480892..1484643- (Nannochloropsis oceanica) back to top