NO04G05220.1, NO04G05220.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G05220.1
Unique NameNO04G05220.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1707
Alignment locationchr4:1464403..1467893 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1464403..1467893 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO04G05220.1 vs.
Match: XP_005827710.1 (hypothetical protein GUITHDRAFT_158290 [Guillardia theta CCMP2712]; EKX40730.1 hypothetical protein GUITHDRAFT_158290 [Guillardia theta CCMP2712])

HSP 1 Score: 316.6 bits (810), Expect = 1.100e-82
Identity = 166/312 (53.21%), Postives = 219/312 (70.19%), Query Frame = 0
Query:   91 LWNEDTKLAAYISVWYLGNIYYNIYNKKALNMLGKNGEGH-WALAAIQLLVGACFVIPQWVLGVRAKPGLTLAQWKALAPIGVFNAAAHGASVLALGAGAVSFGQIVKAGEPVHAALTGAVLLKEIDHPLVYLSLLPIIGGVALASLKELDFKLKALIFALAANQAAAFKNVVAKKTNKENWAKKLGPQNMYAVVTILAFLATMPLVLFQDLPH-LKGLYQGLEAAGKLKDLVKFAVFSGLNFYIYNEFSFLALSKLSPVTHSVANTLKRVVIIVASCIVFRTPTTFLGNVGSAIAVLGTLLYSLSKKKYSG 401
            +WNE  +LA Y ++WY GN YYNIYNKKA+N+LG +  G  W +++ QL VG  +VIP W+LG+R  P +T   WK +APIG++ A AHG SV++LGA AVSF QI+KA EPV +A   A+LL ++    VY +LLPIIGGVALAS+KEL F   ++I A+ ANQ AA K V  K   K+ W K +GP N Y VV +LAFL T+P+V   + P  ++     +    K +D++K  VFSGL FY+YNE SFL L K++P+THSVANTLKRVV++V SCIVF TP +    +GS IA+LGTLLYSL+K+K+ G
Sbjct:    1 MWNETVELAIYFALWYWGNTYYNIYNKKAMNLLGGSKGGLVWTVSSAQLFVGILWVIPLWILGIRTSPKMTAENWKQMAPIGLWAAGAHGGSVISLGAAAVSFAQILKACEPVFSAANEAILLGKVQAWPVYAALLPIIGGVALASVKELSFSWLSVISAMIANQCAALKGVQGKDIMKQPWVKAMGPANQYGVVNMLAFLWTLPIVFAVEGPKAMESWENAMRKGSKKEDVLKNVVFSGLTFYLYNEVSFLCLGKVTPITHSVANTLKRVVVLVVSCIVFNTPVSRESIIGSTIAILGTLLYSLAKQKFGG 312          
The following BLAST results are available for this feature:
BLAST of NO04G05220.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005827710.11.100e-8253.21hypothetical protein GUITHDRAFT_158290 [Guillardia... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G05220NO04G05220Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G05220.1NO04G05220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G05220.1.cds1NO04G05220.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G05220.1.cds2NO04G05220.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G05220.1.cds3NO04G05220.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G05220.1.cds4NO04G05220.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G05220.1.cds5NO04G05220.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G05220.1.cds6NO04G05220.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G05220.1.cds7NO04G05220.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G05220.1.cds8NO04G05220.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G05220.1.cds9NO04G05220.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G05220.1.cds10NO04G05220.1.cds10Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G05220.1 ID=NO04G05220.1|Name=NO04G05220.1|organism=Nannochloropsis oceanica|type=mRNA|length=1707bp
ACAGCCCTTCCCCCTTCTTCACTGAAAGATGGCACGCTTCTCCGCCTCCT
TCTGCCTCCGCATGTTCGGGGCGGGAGTGGTTCTTGCCACGGCCTTCTCC
CTCCAGGCGCCCTTGTCCAGCCGCAGCACCGCGGCCCCTGCCGGCAAGTC
CCTGGCATTTGCTCCCCCCAAGGCGGCGGCCGGCGTGCCTGCCGCGGCCG
GTGTGATGAAGGAGAACGACTTCACCTTCCGCCTGCAGTCCGTTGCCGGG
GGTGCCGCCGCCGCGCCCGCCCCCAAGAAAAACGCGCTCGTCGATAAGCT
CTGGAACGAGGACACCAAGCTGGCCGCGTACATCTCGGTGTGGTACCTGG
GCAACATTTACTACAACATTTACAACAAGAAGGCCTTGAATATGCTCGGC
AAAAACGGCGAGGGTCACTGGGCCTTGGCTGCCATCCAGCTGCTGGTGGG
TGCCTGCTTCGTCATTCCTCAGTGGGTGCTGGGCGTGCGAGCCAAGCCCG
GGCTGACTCTCGCGCAGTGGAAGGCACTTGCCCCCATCGGTGTGTTCAAC
GCTGCCGCCCACGGAGCCTCCGTGCTGGCTCTCGGCGCGGGTGCCGTGTC
CTTCGGGCAGATCGTCAAGGCCGGCGAGCCCGTGCACGCCGCCCTGACTG
GCGCTGTTCTCCTCAAGGAGATCGACCACCCCCTCGTGTATCTGTCCCTG
CTGCCCATCATCGGTGGTGTGGCGCTTGCCTCCCTCAAGGAGCTCGACTT
TAAGCTCAAGGCCCTCATCTTCGCATTGGCTGCCAACCAGGCCGCGGCCT
TCAAGAACGTGGTGGCCAAGAAGACGAACAAGGAGAATTGGGCGAAGAAG
CTCGGGCCCCAGAACATGTACGCCGTGGTAACTATCTTGGCCTTCCTGGC
CACCATGCCGCTCGTCCTCTTCCAGGACCTTCCCCACCTTAAGGGATTGT
ACCAGGGCCTCGAGGCCGCCGGCAAGCTCAAGGATCTGGTGAAGTTCGCC
GTCTTCTCGGGCCTCAATTTCTACATCTACAATGAGTTCTCTTTTCTGGC
GCTCTCCAAGCTCTCGCCCGTCACCCACTCCGTGGCCAACACCCTCAAGC
GCGTGGTGATCATCGTGGCCTCTTGCATCGTCTTCCGCACGCCCACCACC
TTCCTGGGCAACGTGGGCTCGGCCATCGCCGTGTTGGGAACCCTCCTCTA
CTCCCTTTCCAAGAAGAAGTACTCCGGCTCCGCGCACTAAGTTCTTCCCC
GTCCCAGGCCTCCCTCCCTCCCTCTCCTCTCTCCTTCTTTTCCCTCCTCC
CAACCCTTTCTCATCCTTTTGTGTCCCTCTCGGCTGAAGATGAGGGAGGG
AAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGACGGGGGGGAGGAGG
GACAAGAAAGAGACAGAGGTTTGATTTACCCCTCGTGTCCTTTGTTGGAG
GTCGACGAGGAGGAGATATTCTACTACACACGTGATCGGGAGAGGAAGAA
AGAGAGAGAGATGGAAAATAAGGCAAGCCCCTCCCCCCCCTCCCCCCCTC
GCCCCTAAAGCAGGAAGCGGCGAAAAGAGAAGAGAAGAAGAAATACGGGT
CGGGCCTCCACAAGCAAGCACCACGCAAAGAATGAAGAATCGATTTGAAA
AAATGAATGAAGGGTTGAGAGGAAGAATGAGGAAAGGAGTGGAGGAATAG
AAACCTT
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protein sequence of NO04G05220.1

>NO04G05220.1-protein ID=NO04G05220.1-protein|Name=NO04G05220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=404bp
MARFSASFCLRMFGAGVVLATAFSLQAPLSSRSTAAPAGKSLAFAPPKAA
AGVPAAAGVMKENDFTFRLQSVAGGAAAAPAPKKNALVDKLWNEDTKLAA
YISVWYLGNIYYNIYNKKALNMLGKNGEGHWALAAIQLLVGACFVIPQWV
LGVRAKPGLTLAQWKALAPIGVFNAAAHGASVLALGAGAVSFGQIVKAGE
PVHAALTGAVLLKEIDHPLVYLSLLPIIGGVALASLKELDFKLKALIFAL
AANQAAAFKNVVAKKTNKENWAKKLGPQNMYAVVTILAFLATMPLVLFQD
LPHLKGLYQGLEAAGKLKDLVKFAVFSGLNFYIYNEFSFLALSKLSPVTH
SVANTLKRVVIIVASCIVFRTPTTFLGNVGSAIAVLGTLLYSLSKKKYSG
SAH*
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mRNA from alignment at chr4:1464403..1467893-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G05220.1 ID=NO04G05220.1|Name=NO04G05220.1|organism=Nannochloropsis oceanica|type=mRNA|length=3491bp|location=Sequence derived from alignment at chr4:1464403..1467893- (Nannochloropsis oceanica)
ACAGCCCTTCCCCCTTCTTCACTGAAAGATGGCACGCTTCTCCGCCTCCT TCTGCCTCCGCATGTTCGGGGCGGGAGTGGTTCTTGCCACGGCCTTCTCC CTCCAGGCGCCCTTGTCCAGCCGCAGCACCGCGTAAGTCACAACGGAAAG AGAGAGGGAAATGCGGATGGAATGAGAGTTGAAGAAGAAGAGAAGAAAGA GGTTCAGGGGTTTCCATTTCGTCATCACCCATCACGCGGTGCAGTAATGA CAGTAGGAAGCTTACAGGGGAGTGTCCCACTGCGGTGCTGCATGGAGTGA TGGAGATCGAGGGACACGAAGCTCCGTCTGAGAGAGACACAGACGAGTAG AAGGAACCGCGCGAAAGAATCTCATCTGTTTCCTCCTCCTCTCATCCCAA CTCATCTCTCCCATACACCGAAAATCAACTCAGGGCCCCTGCCGGCAAGT CCCTGGCATTTGCTCCCCCCAAGGCGGCGGCCGGCGTGCCTGCCGCGGCC GGTGTGATGAAGGAGAACGACTTCACCTTCCGCCTGCAGTCCGTTGCCGG GGGTGCCGCCGCCGCGCCCGCCCCCAAGAAAAACGCGCTCGTCGATAAGG TATGTCTTTTTCGGGGAAGCAGAGGATGAAAGCTCGACATGGCTGATTCC ATCACCTTTAAGACCTTCCCCCCTTATCCTTTCTTTTCTAGCTCTGGAAC GAGGACACCAAGCTGGCCGCGTACATCTCGGTGTGGTACCTGGGCAACAT TTACTACAACATTTACAACAAGAAGGTAGGCCCACCCCTCCCTCCCTCCA TTTCTCCCTCCCTTCCTTCCTCCCTTCCTTCCTTTTCTGCCCTCGGCCAC CTTGTGCCCCCCCTCCCGTTCGGCGCAGCAGCCAGCCACTGTCTTCCTCA CGACCATCTCCCTCCGTCCCTCCCTCCCTCAGGCCTTGAATATGCTCGGC AAAAACGGCGAGGGTCACTGGGCCTTGGCTGCCATCCAGCTGCTGGTGGG TGCCTGCTTCGTCATTCCTCAGTGGGTGCTGGGCGTGCGAGCCAAGCCCG GGCTGACTCTCGCGCAGTGGAAGGCACTTGCCCCCATCGGTAAGAGGAGG ATCGAAATTTGTGTTGGAAAGGAGTAAGGGGGAAATGTGTGAGGGAGGGA GGGATAGGGAGAGAGACTGGATCAAGGACTTAAGCTGTAACTTGAGATCC GAGTCCACGACGCACTACAGAGACTCATCAAACCTTCCCCCTCCCTCCCT CCTTCCTCCCTCCCTCCCTTCTCTTCAGGTGTGTTCAACGCTGCCGCCCA CGGAGCCTCCGTGCTGGCTCTCGGCGCGGGTGCCGTGTCCTTCGGGCAGA TCGTCAAGGCCGGCGAGCCCGTGCACGCCGCCCTGACTGGCGCTGTTCTC CTCAAGGAGATCGACCACCCCCTCGTGTGAGTACTCTTCCGTCTATCCCT CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCCCTCCCTCC CTGCATCCCCTCCTTGATGTCGCCGTGACATGCTGCCTGGTGGTGGCTAG AAAGGCGACCCTCCTCTCGTTCCGATCCTCCCCTCGTTCCGATCCTTTCC TTGTTCCGATCCTTCCCTTCGGCCTGGCTCGACCCCTTCATGCTTGCCCT CCCCTTCTACCTGTGCCTCTTTTCCCATCCCGCTCACCACCTCCTCCCTC GCTCTTTGGCTCCCTCCCTCCCTAACTCCTCAGGTATCTGTCCCTGCTGC CCATCATCGGTGGTGTGGCGCTTGCCTCCCTCAAGGAGCTCGACTTTAAG CTCAAGGCCCTCATCTTCGCATTGGCTGCCAACCAGGTGCGTCAGCCTTC CACCCCTCTCTTCCTCCCTCTCTCCTTTCGCTTTCCTTTCCGAGGAAAGG GAGACAAGCAGGATAGCATTCCCCCATCCCCTCACCCCTCCCTCCCTCCC GTCCTCAGGCCGCGGCCTTCAAGAACGTGGTGGCCAAGAAGACGAACAAG GAGAATTGGGCGAAGAAGCTCGGGCCCCAGAACATGTGAGCATCGGAGGG AGGGAGGGAGGGAGGGATAGAGGGAGGAAGGGAGGGAAAGAGGGAGGAAG GAGAGGGAAAGAGGGAGGAAGGAGAGGGATTAAGGATTGTGGCAACAAGC TATGATCATGCTACCCGGAAAATAGCATCGGAATGAAGAAAAATATAACG AGGGAAGACGAGTGACAAGACGGTCGTTATGGCTCCCTGTAATTCTCACC CTCCCTTACCGTATCCCTCCTTCCCTTCCTCCCTTCCTCCCTCCCTTCCT CCCTCCAGGTACGCCGTGGTAACTATCTTGGCCTTCCTGGCCACCATGCC GCTCGTCCTCTTCCAGGACCTTCCCCACCTTAAGGGATTGTACCAGGGCC TCGAGGTAGGGCTCCAGGGAGGCAGGGAGGGAGGAGGGGAAATGATGGTT GATGTCGTGGTGACTATTGCCTCGCTGTGTGGTTCTGGTTACGGAGTCGT TCCCGGGTGCACGAGGGATTCATAATCCGCTCATGTTTACGGACTTAGCA CTCATCTCTCCTCCCTCCCTCCCTCCCGTCCTCCCTCCCTCCCCAGGCCG CCGGCAAGCTCAAGGATCTGGTGAAGTTCGCCGTCTTCTCGGGCCTCAAT TTCTACATCTACAATGAGTTCTCTTTTCTGGCGCTCTCCAAGCTCTCGCC CGTCACCCACTCCGTGGCCAACACCCTCAAGGTACGTTGGCGGTCCCTCG GTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTGTCTTCTCTCCCTCTC TTTGGTGGAGCAAACACTTGAATGGGATAGGGCACCAACCCCCTCCCCCC CCCTCCCTCCCTCCCCTTTCCCCTCCTCCCAAGCGCGTGGTGATCATCGT GGCCTCTTGCATCGTCTTCCGCACGCCCACCACCTTCCTGGGCAACGTGG GCTCGGCCATCGCCGTGTTGGGAACCCTCCTCTACTCCCTTTCCAAGAAG AAGTACTCCGGCTCCGCGCACTAAGTTCTTCCCCGTCCCAGGCCTCCCTC CCTCCCTCTCCTCTCTCCTTCTTTTCCCTCCTCCCAACCCTTTCTCATCC TTTTGTGTCCCTCTCGGCTGAAGATGAGGGAGGGAAGGAGGGAGGGAGGG AGGGAGGGAGGGAGGGAGGACGGGGGGGAGGAGGGACAAGAAAGAGACAG AGGTTTGATTTACCCCTCGTGTCCTTTGTTGGAGGTCGACGAGGAGGAGA TATTCTACTACACACGTGATCGGGAGAGGAAGAAAGAGAGAGAGATGGAA AATAAGGCAAGCCCCTCCCCCCCCTCCCCCCCTCGCCCCTAAAGCAGGAA GCGGCGAAAAGAGAAGAGAAGAAGAAATACGGGTCGGGCCTCCACAAGCA AGCACCACGCAAAGAATGAAGAATCGATTTGAAAAAATGAATGAAGGGTT GAGAGGAAGAATGAGGAAAGGAGTGGAGGAATAGAAACCTT
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Coding sequence (CDS) from alignment at chr4:1464403..1467893-

>NO04G05220.1 ID=NO04G05220.1|Name=NO04G05220.1|organism=Nannochloropsis oceanica|type=CDS|length=1212bp|location=Sequence derived from alignment at chr4:1464403..1467893- (Nannochloropsis oceanica)
ATGGCACGCTTCTCCGCCTCCTTCTGCCTCCGCATGTTCGGGGCGGGAGT
GGTTCTTGCCACGGCCTTCTCCCTCCAGGCGCCCTTGTCCAGCCGCAGCA
CCGCGGCCCCTGCCGGCAAGTCCCTGGCATTTGCTCCCCCCAAGGCGGCG
GCCGGCGTGCCTGCCGCGGCCGGTGTGATGAAGGAGAACGACTTCACCTT
CCGCCTGCAGTCCGTTGCCGGGGGTGCCGCCGCCGCGCCCGCCCCCAAGA
AAAACGCGCTCGTCGATAAGCTCTGGAACGAGGACACCAAGCTGGCCGCG
TACATCTCGGTGTGGTACCTGGGCAACATTTACTACAACATTTACAACAA
GAAGGCCTTGAATATGCTCGGCAAAAACGGCGAGGGTCACTGGGCCTTGG
CTGCCATCCAGCTGCTGGTGGGTGCCTGCTTCGTCATTCCTCAGTGGGTG
CTGGGCGTGCGAGCCAAGCCCGGGCTGACTCTCGCGCAGTGGAAGGCACT
TGCCCCCATCGGTGTGTTCAACGCTGCCGCCCACGGAGCCTCCGTGCTGG
CTCTCGGCGCGGGTGCCGTGTCCTTCGGGCAGATCGTCAAGGCCGGCGAG
CCCGTGCACGCCGCCCTGACTGGCGCTGTTCTCCTCAAGGAGATCGACCA
CCCCCTCGTGTATCTGTCCCTGCTGCCCATCATCGGTGGTGTGGCGCTTG
CCTCCCTCAAGGAGCTCGACTTTAAGCTCAAGGCCCTCATCTTCGCATTG
GCTGCCAACCAGGCCGCGGCCTTCAAGAACGTGGTGGCCAAGAAGACGAA
CAAGGAGAATTGGGCGAAGAAGCTCGGGCCCCAGAACATGTACGCCGTGG
TAACTATCTTGGCCTTCCTGGCCACCATGCCGCTCGTCCTCTTCCAGGAC
CTTCCCCACCTTAAGGGATTGTACCAGGGCCTCGAGGCCGCCGGCAAGCT
CAAGGATCTGGTGAAGTTCGCCGTCTTCTCGGGCCTCAATTTCTACATCT
ACAATGAGTTCTCTTTTCTGGCGCTCTCCAAGCTCTCGCCCGTCACCCAC
TCCGTGGCCAACACCCTCAAGCGCGTGGTGATCATCGTGGCCTCTTGCAT
CGTCTTCCGCACGCCCACCACCTTCCTGGGCAACGTGGGCTCGGCCATCG
CCGTGTTGGGAACCCTCCTCTACTCCCTTTCCAAGAAGAAGTACTCCGGC
TCCGCGCACTAA
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Synonyms
Publications