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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr4 | genome | chr4:1464403..1467893 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G05220.1 vs.
Match: XP_005827710.1 (hypothetical protein GUITHDRAFT_158290 [Guillardia theta CCMP2712]; EKX40730.1 hypothetical protein GUITHDRAFT_158290 [Guillardia theta CCMP2712]) HSP 1 Score: 316.6 bits (810), Expect = 1.100e-82 Identity = 166/312 (53.21%), Postives = 219/312 (70.19%), Query Frame = 0
Query: 91 LWNEDTKLAAYISVWYLGNIYYNIYNKKALNMLGKNGEGH-WALAAIQLLVGACFVIPQWVLGVRAKPGLTLAQWKALAPIGVFNAAAHGASVLALGAGAVSFGQIVKAGEPVHAALTGAVLLKEIDHPLVYLSLLPIIGGVALASLKELDFKLKALIFALAANQAAAFKNVVAKKTNKENWAKKLGPQNMYAVVTILAFLATMPLVLFQDLPH-LKGLYQGLEAAGKLKDLVKFAVFSGLNFYIYNEFSFLALSKLSPVTHSVANTLKRVVIIVASCIVFRTPTTFLGNVGSAIAVLGTLLYSLSKKKYSG 401
+WNE +LA Y ++WY GN YYNIYNKKA+N+LG + G W +++ QL VG +VIP W+LG+R P +T WK +APIG++ A AHG SV++LGA AVSF QI+KA EPV +A A+LL ++ VY +LLPIIGGVALAS+KEL F ++I A+ ANQ AA K V K K+ W K +GP N Y VV +LAFL T+P+V + P ++ + K +D++K VFSGL FY+YNE SFL L K++P+THSVANTLKRVV++V SCIVF TP + +GS IA+LGTLLYSL+K+K+ G
Sbjct: 1 MWNETVELAIYFALWYWGNTYYNIYNKKAMNLLGGSKGGLVWTVSSAQLFVGILWVIPLWILGIRTSPKMTAENWKQMAPIGLWAAGAHGGSVISLGAAAVSFAQILKACEPVFSAANEAILLGKVQAWPVYAALLPIIGGVALASVKELSFSWLSVISAMIANQCAALKGVQGKDIMKQPWVKAMGPANQYGVVNMLAFLWTLPIVFAVEGPKAMESWENAMRKGSKKEDVLKNVVFSGLTFYLYNEVSFLCLGKVTPITHSVANTLKRVVVLVVSCIVFNTPVSRESIIGSTIAILGTLLYSLAKQKFGG 312
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G05220.1 ID=NO04G05220.1|Name=NO04G05220.1|organism=Nannochloropsis oceanica|type=mRNA|length=1707bp
ACAGCCCTTCCCCCTTCTTCACTGAAAGATGGCACGCTTCTCCGCCTCCT
TCTGCCTCCGCATGTTCGGGGCGGGAGTGGTTCTTGCCACGGCCTTCTCC
CTCCAGGCGCCCTTGTCCAGCCGCAGCACCGCGGCCCCTGCCGGCAAGTC
CCTGGCATTTGCTCCCCCCAAGGCGGCGGCCGGCGTGCCTGCCGCGGCCG
GTGTGATGAAGGAGAACGACTTCACCTTCCGCCTGCAGTCCGTTGCCGGG
GGTGCCGCCGCCGCGCCCGCCCCCAAGAAAAACGCGCTCGTCGATAAGCT
CTGGAACGAGGACACCAAGCTGGCCGCGTACATCTCGGTGTGGTACCTGG
GCAACATTTACTACAACATTTACAACAAGAAGGCCTTGAATATGCTCGGC
AAAAACGGCGAGGGTCACTGGGCCTTGGCTGCCATCCAGCTGCTGGTGGG
TGCCTGCTTCGTCATTCCTCAGTGGGTGCTGGGCGTGCGAGCCAAGCCCG
GGCTGACTCTCGCGCAGTGGAAGGCACTTGCCCCCATCGGTGTGTTCAAC
GCTGCCGCCCACGGAGCCTCCGTGCTGGCTCTCGGCGCGGGTGCCGTGTC
CTTCGGGCAGATCGTCAAGGCCGGCGAGCCCGTGCACGCCGCCCTGACTG
GCGCTGTTCTCCTCAAGGAGATCGACCACCCCCTCGTGTATCTGTCCCTG
CTGCCCATCATCGGTGGTGTGGCGCTTGCCTCCCTCAAGGAGCTCGACTT
TAAGCTCAAGGCCCTCATCTTCGCATTGGCTGCCAACCAGGCCGCGGCCT
TCAAGAACGTGGTGGCCAAGAAGACGAACAAGGAGAATTGGGCGAAGAAG
CTCGGGCCCCAGAACATGTACGCCGTGGTAACTATCTTGGCCTTCCTGGC
CACCATGCCGCTCGTCCTCTTCCAGGACCTTCCCCACCTTAAGGGATTGT
ACCAGGGCCTCGAGGCCGCCGGCAAGCTCAAGGATCTGGTGAAGTTCGCC
GTCTTCTCGGGCCTCAATTTCTACATCTACAATGAGTTCTCTTTTCTGGC
GCTCTCCAAGCTCTCGCCCGTCACCCACTCCGTGGCCAACACCCTCAAGC
GCGTGGTGATCATCGTGGCCTCTTGCATCGTCTTCCGCACGCCCACCACC
TTCCTGGGCAACGTGGGCTCGGCCATCGCCGTGTTGGGAACCCTCCTCTA
CTCCCTTTCCAAGAAGAAGTACTCCGGCTCCGCGCACTAAGTTCTTCCCC
GTCCCAGGCCTCCCTCCCTCCCTCTCCTCTCTCCTTCTTTTCCCTCCTCC
CAACCCTTTCTCATCCTTTTGTGTCCCTCTCGGCTGAAGATGAGGGAGGG
AAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGACGGGGGGGAGGAGG
GACAAGAAAGAGACAGAGGTTTGATTTACCCCTCGTGTCCTTTGTTGGAG
GTCGACGAGGAGGAGATATTCTACTACACACGTGATCGGGAGAGGAAGAA
AGAGAGAGAGATGGAAAATAAGGCAAGCCCCTCCCCCCCCTCCCCCCCTC
GCCCCTAAAGCAGGAAGCGGCGAAAAGAGAAGAGAAGAAGAAATACGGGT
CGGGCCTCCACAAGCAAGCACCACGCAAAGAATGAAGAATCGATTTGAAA
AAATGAATGAAGGGTTGAGAGGAAGAATGAGGAAAGGAGTGGAGGAATAG
AAACCTT back to topprotein sequence of NO04G05220.1 >NO04G05220.1-protein ID=NO04G05220.1-protein|Name=NO04G05220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=404bp
MARFSASFCLRMFGAGVVLATAFSLQAPLSSRSTAAPAGKSLAFAPPKAA
AGVPAAAGVMKENDFTFRLQSVAGGAAAAPAPKKNALVDKLWNEDTKLAA
YISVWYLGNIYYNIYNKKALNMLGKNGEGHWALAAIQLLVGACFVIPQWV
LGVRAKPGLTLAQWKALAPIGVFNAAAHGASVLALGAGAVSFGQIVKAGE
PVHAALTGAVLLKEIDHPLVYLSLLPIIGGVALASLKELDFKLKALIFAL
AANQAAAFKNVVAKKTNKENWAKKLGPQNMYAVVTILAFLATMPLVLFQD
LPHLKGLYQGLEAAGKLKDLVKFAVFSGLNFYIYNEFSFLALSKLSPVTH
SVANTLKRVVIIVASCIVFRTPTTFLGNVGSAIAVLGTLLYSLSKKKYSG
SAH* back to topmRNA from alignment at chr4:1464403..1467893- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G05220.1 ID=NO04G05220.1|Name=NO04G05220.1|organism=Nannochloropsis oceanica|type=mRNA|length=3491bp|location=Sequence derived from alignment at chr4:1464403..1467893- (Nannochloropsis oceanica)
ACAGCCCTTCCCCCTTCTTCACTGAAAGATGGCACGCTTCTCCGCCTCCT
TCTGCCTCCGCATGTTCGGGGCGGGAGTGGTTCTTGCCACGGCCTTCTCC
CTCCAGGCGCCCTTGTCCAGCCGCAGCACCGCGTAAGTCACAACGGAAAG
AGAGAGGGAAATGCGGATGGAATGAGAGTTGAAGAAGAAGAGAAGAAAGA
GGTTCAGGGGTTTCCATTTCGTCATCACCCATCACGCGGTGCAGTAATGA
CAGTAGGAAGCTTACAGGGGAGTGTCCCACTGCGGTGCTGCATGGAGTGA
TGGAGATCGAGGGACACGAAGCTCCGTCTGAGAGAGACACAGACGAGTAG
AAGGAACCGCGCGAAAGAATCTCATCTGTTTCCTCCTCCTCTCATCCCAA
CTCATCTCTCCCATACACCGAAAATCAACTCAGGGCCCCTGCCGGCAAGT
CCCTGGCATTTGCTCCCCCCAAGGCGGCGGCCGGCGTGCCTGCCGCGGCC
GGTGTGATGAAGGAGAACGACTTCACCTTCCGCCTGCAGTCCGTTGCCGG
GGGTGCCGCCGCCGCGCCCGCCCCCAAGAAAAACGCGCTCGTCGATAAGG
TATGTCTTTTTCGGGGAAGCAGAGGATGAAAGCTCGACATGGCTGATTCC
ATCACCTTTAAGACCTTCCCCCCTTATCCTTTCTTTTCTAGCTCTGGAAC
GAGGACACCAAGCTGGCCGCGTACATCTCGGTGTGGTACCTGGGCAACAT
TTACTACAACATTTACAACAAGAAGGTAGGCCCACCCCTCCCTCCCTCCA
TTTCTCCCTCCCTTCCTTCCTCCCTTCCTTCCTTTTCTGCCCTCGGCCAC
CTTGTGCCCCCCCTCCCGTTCGGCGCAGCAGCCAGCCACTGTCTTCCTCA
CGACCATCTCCCTCCGTCCCTCCCTCCCTCAGGCCTTGAATATGCTCGGC
AAAAACGGCGAGGGTCACTGGGCCTTGGCTGCCATCCAGCTGCTGGTGGG
TGCCTGCTTCGTCATTCCTCAGTGGGTGCTGGGCGTGCGAGCCAAGCCCG
GGCTGACTCTCGCGCAGTGGAAGGCACTTGCCCCCATCGGTAAGAGGAGG
ATCGAAATTTGTGTTGGAAAGGAGTAAGGGGGAAATGTGTGAGGGAGGGA
GGGATAGGGAGAGAGACTGGATCAAGGACTTAAGCTGTAACTTGAGATCC
GAGTCCACGACGCACTACAGAGACTCATCAAACCTTCCCCCTCCCTCCCT
CCTTCCTCCCTCCCTCCCTTCTCTTCAGGTGTGTTCAACGCTGCCGCCCA
CGGAGCCTCCGTGCTGGCTCTCGGCGCGGGTGCCGTGTCCTTCGGGCAGA
TCGTCAAGGCCGGCGAGCCCGTGCACGCCGCCCTGACTGGCGCTGTTCTC
CTCAAGGAGATCGACCACCCCCTCGTGTGAGTACTCTTCCGTCTATCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCCCTCCCTCC
CTGCATCCCCTCCTTGATGTCGCCGTGACATGCTGCCTGGTGGTGGCTAG
AAAGGCGACCCTCCTCTCGTTCCGATCCTCCCCTCGTTCCGATCCTTTCC
TTGTTCCGATCCTTCCCTTCGGCCTGGCTCGACCCCTTCATGCTTGCCCT
CCCCTTCTACCTGTGCCTCTTTTCCCATCCCGCTCACCACCTCCTCCCTC
GCTCTTTGGCTCCCTCCCTCCCTAACTCCTCAGGTATCTGTCCCTGCTGC
CCATCATCGGTGGTGTGGCGCTTGCCTCCCTCAAGGAGCTCGACTTTAAG
CTCAAGGCCCTCATCTTCGCATTGGCTGCCAACCAGGTGCGTCAGCCTTC
CACCCCTCTCTTCCTCCCTCTCTCCTTTCGCTTTCCTTTCCGAGGAAAGG
GAGACAAGCAGGATAGCATTCCCCCATCCCCTCACCCCTCCCTCCCTCCC
GTCCTCAGGCCGCGGCCTTCAAGAACGTGGTGGCCAAGAAGACGAACAAG
GAGAATTGGGCGAAGAAGCTCGGGCCCCAGAACATGTGAGCATCGGAGGG
AGGGAGGGAGGGAGGGATAGAGGGAGGAAGGGAGGGAAAGAGGGAGGAAG
GAGAGGGAAAGAGGGAGGAAGGAGAGGGATTAAGGATTGTGGCAACAAGC
TATGATCATGCTACCCGGAAAATAGCATCGGAATGAAGAAAAATATAACG
AGGGAAGACGAGTGACAAGACGGTCGTTATGGCTCCCTGTAATTCTCACC
CTCCCTTACCGTATCCCTCCTTCCCTTCCTCCCTTCCTCCCTCCCTTCCT
CCCTCCAGGTACGCCGTGGTAACTATCTTGGCCTTCCTGGCCACCATGCC
GCTCGTCCTCTTCCAGGACCTTCCCCACCTTAAGGGATTGTACCAGGGCC
TCGAGGTAGGGCTCCAGGGAGGCAGGGAGGGAGGAGGGGAAATGATGGTT
GATGTCGTGGTGACTATTGCCTCGCTGTGTGGTTCTGGTTACGGAGTCGT
TCCCGGGTGCACGAGGGATTCATAATCCGCTCATGTTTACGGACTTAGCA
CTCATCTCTCCTCCCTCCCTCCCTCCCGTCCTCCCTCCCTCCCCAGGCCG
CCGGCAAGCTCAAGGATCTGGTGAAGTTCGCCGTCTTCTCGGGCCTCAAT
TTCTACATCTACAATGAGTTCTCTTTTCTGGCGCTCTCCAAGCTCTCGCC
CGTCACCCACTCCGTGGCCAACACCCTCAAGGTACGTTGGCGGTCCCTCG
GTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTGTCTTCTCTCCCTCTC
TTTGGTGGAGCAAACACTTGAATGGGATAGGGCACCAACCCCCTCCCCCC
CCCTCCCTCCCTCCCCTTTCCCCTCCTCCCAAGCGCGTGGTGATCATCGT
GGCCTCTTGCATCGTCTTCCGCACGCCCACCACCTTCCTGGGCAACGTGG
GCTCGGCCATCGCCGTGTTGGGAACCCTCCTCTACTCCCTTTCCAAGAAG
AAGTACTCCGGCTCCGCGCACTAAGTTCTTCCCCGTCCCAGGCCTCCCTC
CCTCCCTCTCCTCTCTCCTTCTTTTCCCTCCTCCCAACCCTTTCTCATCC
TTTTGTGTCCCTCTCGGCTGAAGATGAGGGAGGGAAGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGACGGGGGGGAGGAGGGACAAGAAAGAGACAG
AGGTTTGATTTACCCCTCGTGTCCTTTGTTGGAGGTCGACGAGGAGGAGA
TATTCTACTACACACGTGATCGGGAGAGGAAGAAAGAGAGAGAGATGGAA
AATAAGGCAAGCCCCTCCCCCCCCTCCCCCCCTCGCCCCTAAAGCAGGAA
GCGGCGAAAAGAGAAGAGAAGAAGAAATACGGGTCGGGCCTCCACAAGCA
AGCACCACGCAAAGAATGAAGAATCGATTTGAAAAAATGAATGAAGGGTT
GAGAGGAAGAATGAGGAAAGGAGTGGAGGAATAGAAACCTT back to topCoding sequence (CDS) from alignment at chr4:1464403..1467893- >NO04G05220.1 ID=NO04G05220.1|Name=NO04G05220.1|organism=Nannochloropsis oceanica|type=CDS|length=1212bp|location=Sequence derived from alignment at chr4:1464403..1467893- (Nannochloropsis oceanica)
ATGGCACGCTTCTCCGCCTCCTTCTGCCTCCGCATGTTCGGGGCGGGAGT
GGTTCTTGCCACGGCCTTCTCCCTCCAGGCGCCCTTGTCCAGCCGCAGCA
CCGCGGCCCCTGCCGGCAAGTCCCTGGCATTTGCTCCCCCCAAGGCGGCG
GCCGGCGTGCCTGCCGCGGCCGGTGTGATGAAGGAGAACGACTTCACCTT
CCGCCTGCAGTCCGTTGCCGGGGGTGCCGCCGCCGCGCCCGCCCCCAAGA
AAAACGCGCTCGTCGATAAGCTCTGGAACGAGGACACCAAGCTGGCCGCG
TACATCTCGGTGTGGTACCTGGGCAACATTTACTACAACATTTACAACAA
GAAGGCCTTGAATATGCTCGGCAAAAACGGCGAGGGTCACTGGGCCTTGG
CTGCCATCCAGCTGCTGGTGGGTGCCTGCTTCGTCATTCCTCAGTGGGTG
CTGGGCGTGCGAGCCAAGCCCGGGCTGACTCTCGCGCAGTGGAAGGCACT
TGCCCCCATCGGTGTGTTCAACGCTGCCGCCCACGGAGCCTCCGTGCTGG
CTCTCGGCGCGGGTGCCGTGTCCTTCGGGCAGATCGTCAAGGCCGGCGAG
CCCGTGCACGCCGCCCTGACTGGCGCTGTTCTCCTCAAGGAGATCGACCA
CCCCCTCGTGTATCTGTCCCTGCTGCCCATCATCGGTGGTGTGGCGCTTG
CCTCCCTCAAGGAGCTCGACTTTAAGCTCAAGGCCCTCATCTTCGCATTG
GCTGCCAACCAGGCCGCGGCCTTCAAGAACGTGGTGGCCAAGAAGACGAA
CAAGGAGAATTGGGCGAAGAAGCTCGGGCCCCAGAACATGTACGCCGTGG
TAACTATCTTGGCCTTCCTGGCCACCATGCCGCTCGTCCTCTTCCAGGAC
CTTCCCCACCTTAAGGGATTGTACCAGGGCCTCGAGGCCGCCGGCAAGCT
CAAGGATCTGGTGAAGTTCGCCGTCTTCTCGGGCCTCAATTTCTACATCT
ACAATGAGTTCTCTTTTCTGGCGCTCTCCAAGCTCTCGCCCGTCACCCAC
TCCGTGGCCAACACCCTCAAGCGCGTGGTGATCATCGTGGCCTCTTGCAT
CGTCTTCCGCACGCCCACCACCTTCCTGGGCAACGTGGGCTCGGCCATCG
CCGTGTTGGGAACCCTCCTCTACTCCCTTTCCAAGAAGAAGTACTCCGGC
TCCGCGCACTAA back to top
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