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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr4 | genome | chr4:1464403..1467893 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G05220.1 vs.
Match: XP_005827710.1 (hypothetical protein GUITHDRAFT_158290 [Guillardia theta CCMP2712]; EKX40730.1 hypothetical protein GUITHDRAFT_158290 [Guillardia theta CCMP2712]) HSP 1 Score: 316.6 bits (810), Expect = 1.100e-82 Identity = 166/312 (53.21%), Postives = 219/312 (70.19%), Query Frame = 0
Query: 91 LWNEDTKLAAYISVWYLGNIYYNIYNKKALNMLGKNGEGH-WALAAIQLLVGACFVIPQWVLGVRAKPGLTLAQWKALAPIGVFNAAAHGASVLALGAGAVSFGQIVKAGEPVHAALTGAVLLKEIDHPLVYLSLLPIIGGVALASLKELDFKLKALIFALAANQAAAFKNVVAKKTNKENWAKKLGPQNMYAVVTILAFLATMPLVLFQDLPH-LKGLYQGLEAAGKLKDLVKFAVFSGLNFYIYNEFSFLALSKLSPVTHSVANTLKRVVIIVASCIVFRTPTTFLGNVGSAIAVLGTLLYSLSKKKYSG 401
+WNE +LA Y ++WY GN YYNIYNKKA+N+LG + G W +++ QL VG +VIP W+LG+R P +T WK +APIG++ A AHG SV++LGA AVSF QI+KA EPV +A A+LL ++ VY +LLPIIGGVALAS+KEL F ++I A+ ANQ AA K V K K+ W K +GP N Y VV +LAFL T+P+V + P ++ + K +D++K VFSGL FY+YNE SFL L K++P+THSVANTLKRVV++V SCIVF TP + +GS IA+LGTLLYSL+K+K+ G
Sbjct: 1 MWNETVELAIYFALWYWGNTYYNIYNKKAMNLLGGSKGGLVWTVSSAQLFVGILWVIPLWILGIRTSPKMTAENWKQMAPIGLWAAGAHGGSVISLGAAAVSFAQILKACEPVFSAANEAILLGKVQAWPVYAALLPIIGGVALASVKELSFSWLSVISAMIANQCAALKGVQGKDIMKQPWVKAMGPANQYGVVNMLAFLWTLPIVFAVEGPKAMESWENAMRKGSKKEDVLKNVVFSGLTFYLYNEVSFLCLGKVTPITHSVANTLKRVVVLVVSCIVFNTPVSRESIIGSTIAILGTLLYSLAKQKFGG 312
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G05220.1 ID=NO04G05220.1|Name=NO04G05220.1|organism=Nannochloropsis oceanica|type=mRNA|length=1707bp ACAGCCCTTCCCCCTTCTTCACTGAAAGATGGCACGCTTCTCCGCCTCCT TCTGCCTCCGCATGTTCGGGGCGGGAGTGGTTCTTGCCACGGCCTTCTCC CTCCAGGCGCCCTTGTCCAGCCGCAGCACCGCGGCCCCTGCCGGCAAGTC CCTGGCATTTGCTCCCCCCAAGGCGGCGGCCGGCGTGCCTGCCGCGGCCG GTGTGATGAAGGAGAACGACTTCACCTTCCGCCTGCAGTCCGTTGCCGGG GGTGCCGCCGCCGCGCCCGCCCCCAAGAAAAACGCGCTCGTCGATAAGCT CTGGAACGAGGACACCAAGCTGGCCGCGTACATCTCGGTGTGGTACCTGG GCAACATTTACTACAACATTTACAACAAGAAGGCCTTGAATATGCTCGGC AAAAACGGCGAGGGTCACTGGGCCTTGGCTGCCATCCAGCTGCTGGTGGG TGCCTGCTTCGTCATTCCTCAGTGGGTGCTGGGCGTGCGAGCCAAGCCCG GGCTGACTCTCGCGCAGTGGAAGGCACTTGCCCCCATCGGTGTGTTCAAC GCTGCCGCCCACGGAGCCTCCGTGCTGGCTCTCGGCGCGGGTGCCGTGTC CTTCGGGCAGATCGTCAAGGCCGGCGAGCCCGTGCACGCCGCCCTGACTG GCGCTGTTCTCCTCAAGGAGATCGACCACCCCCTCGTGTATCTGTCCCTG CTGCCCATCATCGGTGGTGTGGCGCTTGCCTCCCTCAAGGAGCTCGACTT TAAGCTCAAGGCCCTCATCTTCGCATTGGCTGCCAACCAGGCCGCGGCCT TCAAGAACGTGGTGGCCAAGAAGACGAACAAGGAGAATTGGGCGAAGAAG CTCGGGCCCCAGAACATGTACGCCGTGGTAACTATCTTGGCCTTCCTGGC CACCATGCCGCTCGTCCTCTTCCAGGACCTTCCCCACCTTAAGGGATTGT ACCAGGGCCTCGAGGCCGCCGGCAAGCTCAAGGATCTGGTGAAGTTCGCC GTCTTCTCGGGCCTCAATTTCTACATCTACAATGAGTTCTCTTTTCTGGC GCTCTCCAAGCTCTCGCCCGTCACCCACTCCGTGGCCAACACCCTCAAGC GCGTGGTGATCATCGTGGCCTCTTGCATCGTCTTCCGCACGCCCACCACC TTCCTGGGCAACGTGGGCTCGGCCATCGCCGTGTTGGGAACCCTCCTCTA CTCCCTTTCCAAGAAGAAGTACTCCGGCTCCGCGCACTAAGTTCTTCCCC GTCCCAGGCCTCCCTCCCTCCCTCTCCTCTCTCCTTCTTTTCCCTCCTCC CAACCCTTTCTCATCCTTTTGTGTCCCTCTCGGCTGAAGATGAGGGAGGG AAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGACGGGGGGGAGGAGG GACAAGAAAGAGACAGAGGTTTGATTTACCCCTCGTGTCCTTTGTTGGAG GTCGACGAGGAGGAGATATTCTACTACACACGTGATCGGGAGAGGAAGAA AGAGAGAGAGATGGAAAATAAGGCAAGCCCCTCCCCCCCCTCCCCCCCTC GCCCCTAAAGCAGGAAGCGGCGAAAAGAGAAGAGAAGAAGAAATACGGGT CGGGCCTCCACAAGCAAGCACCACGCAAAGAATGAAGAATCGATTTGAAA AAATGAATGAAGGGTTGAGAGGAAGAATGAGGAAAGGAGTGGAGGAATAG AAACCTT back to topprotein sequence of NO04G05220.1 >NO04G05220.1-protein ID=NO04G05220.1-protein|Name=NO04G05220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=404bp MARFSASFCLRMFGAGVVLATAFSLQAPLSSRSTAAPAGKSLAFAPPKAA AGVPAAAGVMKENDFTFRLQSVAGGAAAAPAPKKNALVDKLWNEDTKLAA YISVWYLGNIYYNIYNKKALNMLGKNGEGHWALAAIQLLVGACFVIPQWV LGVRAKPGLTLAQWKALAPIGVFNAAAHGASVLALGAGAVSFGQIVKAGE PVHAALTGAVLLKEIDHPLVYLSLLPIIGGVALASLKELDFKLKALIFAL AANQAAAFKNVVAKKTNKENWAKKLGPQNMYAVVTILAFLATMPLVLFQD LPHLKGLYQGLEAAGKLKDLVKFAVFSGLNFYIYNEFSFLALSKLSPVTH SVANTLKRVVIIVASCIVFRTPTTFLGNVGSAIAVLGTLLYSLSKKKYSG SAH* back to topmRNA from alignment at chr4:1464403..1467893- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G05220.1 ID=NO04G05220.1|Name=NO04G05220.1|organism=Nannochloropsis oceanica|type=mRNA|length=3491bp|location=Sequence derived from alignment at chr4:1464403..1467893- (Nannochloropsis oceanica) ACAGCCCTTCCCCCTTCTTCACTGAAAGATGGCACGCTTCTCCGCCTCCT
TCTGCCTCCGCATGTTCGGGGCGGGAGTGGTTCTTGCCACGGCCTTCTCC
CTCCAGGCGCCCTTGTCCAGCCGCAGCACCGCGTAAGTCACAACGGAAAG
AGAGAGGGAAATGCGGATGGAATGAGAGTTGAAGAAGAAGAGAAGAAAGA
GGTTCAGGGGTTTCCATTTCGTCATCACCCATCACGCGGTGCAGTAATGA
CAGTAGGAAGCTTACAGGGGAGTGTCCCACTGCGGTGCTGCATGGAGTGA
TGGAGATCGAGGGACACGAAGCTCCGTCTGAGAGAGACACAGACGAGTAG
AAGGAACCGCGCGAAAGAATCTCATCTGTTTCCTCCTCCTCTCATCCCAA
CTCATCTCTCCCATACACCGAAAATCAACTCAGGGCCCCTGCCGGCAAGT
CCCTGGCATTTGCTCCCCCCAAGGCGGCGGCCGGCGTGCCTGCCGCGGCC
GGTGTGATGAAGGAGAACGACTTCACCTTCCGCCTGCAGTCCGTTGCCGG
GGGTGCCGCCGCCGCGCCCGCCCCCAAGAAAAACGCGCTCGTCGATAAGG
TATGTCTTTTTCGGGGAAGCAGAGGATGAAAGCTCGACATGGCTGATTCC
ATCACCTTTAAGACCTTCCCCCCTTATCCTTTCTTTTCTAGCTCTGGAAC
GAGGACACCAAGCTGGCCGCGTACATCTCGGTGTGGTACCTGGGCAACAT
TTACTACAACATTTACAACAAGAAGGTAGGCCCACCCCTCCCTCCCTCCA
TTTCTCCCTCCCTTCCTTCCTCCCTTCCTTCCTTTTCTGCCCTCGGCCAC
CTTGTGCCCCCCCTCCCGTTCGGCGCAGCAGCCAGCCACTGTCTTCCTCA
CGACCATCTCCCTCCGTCCCTCCCTCCCTCAGGCCTTGAATATGCTCGGC
AAAAACGGCGAGGGTCACTGGGCCTTGGCTGCCATCCAGCTGCTGGTGGG
TGCCTGCTTCGTCATTCCTCAGTGGGTGCTGGGCGTGCGAGCCAAGCCCG
GGCTGACTCTCGCGCAGTGGAAGGCACTTGCCCCCATCGGTAAGAGGAGG
ATCGAAATTTGTGTTGGAAAGGAGTAAGGGGGAAATGTGTGAGGGAGGGA
GGGATAGGGAGAGAGACTGGATCAAGGACTTAAGCTGTAACTTGAGATCC
GAGTCCACGACGCACTACAGAGACTCATCAAACCTTCCCCCTCCCTCCCT
CCTTCCTCCCTCCCTCCCTTCTCTTCAGGTGTGTTCAACGCTGCCGCCCA
CGGAGCCTCCGTGCTGGCTCTCGGCGCGGGTGCCGTGTCCTTCGGGCAGA
TCGTCAAGGCCGGCGAGCCCGTGCACGCCGCCCTGACTGGCGCTGTTCTC
CTCAAGGAGATCGACCACCCCCTCGTGTGAGTACTCTTCCGTCTATCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCCCTCCCTCC
CTGCATCCCCTCCTTGATGTCGCCGTGACATGCTGCCTGGTGGTGGCTAG
AAAGGCGACCCTCCTCTCGTTCCGATCCTCCCCTCGTTCCGATCCTTTCC
TTGTTCCGATCCTTCCCTTCGGCCTGGCTCGACCCCTTCATGCTTGCCCT
CCCCTTCTACCTGTGCCTCTTTTCCCATCCCGCTCACCACCTCCTCCCTC
GCTCTTTGGCTCCCTCCCTCCCTAACTCCTCAGGTATCTGTCCCTGCTGC
CCATCATCGGTGGTGTGGCGCTTGCCTCCCTCAAGGAGCTCGACTTTAAG
CTCAAGGCCCTCATCTTCGCATTGGCTGCCAACCAGGTGCGTCAGCCTTC
CACCCCTCTCTTCCTCCCTCTCTCCTTTCGCTTTCCTTTCCGAGGAAAGG
GAGACAAGCAGGATAGCATTCCCCCATCCCCTCACCCCTCCCTCCCTCCC
GTCCTCAGGCCGCGGCCTTCAAGAACGTGGTGGCCAAGAAGACGAACAAG
GAGAATTGGGCGAAGAAGCTCGGGCCCCAGAACATGTGAGCATCGGAGGG
AGGGAGGGAGGGAGGGATAGAGGGAGGAAGGGAGGGAAAGAGGGAGGAAG
GAGAGGGAAAGAGGGAGGAAGGAGAGGGATTAAGGATTGTGGCAACAAGC
TATGATCATGCTACCCGGAAAATAGCATCGGAATGAAGAAAAATATAACG
AGGGAAGACGAGTGACAAGACGGTCGTTATGGCTCCCTGTAATTCTCACC
CTCCCTTACCGTATCCCTCCTTCCCTTCCTCCCTTCCTCCCTCCCTTCCT
CCCTCCAGGTACGCCGTGGTAACTATCTTGGCCTTCCTGGCCACCATGCC
GCTCGTCCTCTTCCAGGACCTTCCCCACCTTAAGGGATTGTACCAGGGCC
TCGAGGTAGGGCTCCAGGGAGGCAGGGAGGGAGGAGGGGAAATGATGGTT
GATGTCGTGGTGACTATTGCCTCGCTGTGTGGTTCTGGTTACGGAGTCGT
TCCCGGGTGCACGAGGGATTCATAATCCGCTCATGTTTACGGACTTAGCA
CTCATCTCTCCTCCCTCCCTCCCTCCCGTCCTCCCTCCCTCCCCAGGCCG
CCGGCAAGCTCAAGGATCTGGTGAAGTTCGCCGTCTTCTCGGGCCTCAAT
TTCTACATCTACAATGAGTTCTCTTTTCTGGCGCTCTCCAAGCTCTCGCC
CGTCACCCACTCCGTGGCCAACACCCTCAAGGTACGTTGGCGGTCCCTCG
GTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTGTCTTCTCTCCCTCTC
TTTGGTGGAGCAAACACTTGAATGGGATAGGGCACCAACCCCCTCCCCCC
CCCTCCCTCCCTCCCCTTTCCCCTCCTCCCAAGCGCGTGGTGATCATCGT
GGCCTCTTGCATCGTCTTCCGCACGCCCACCACCTTCCTGGGCAACGTGG
GCTCGGCCATCGCCGTGTTGGGAACCCTCCTCTACTCCCTTTCCAAGAAG
AAGTACTCCGGCTCCGCGCACTAAGTTCTTCCCCGTCCCAGGCCTCCCTC
CCTCCCTCTCCTCTCTCCTTCTTTTCCCTCCTCCCAACCCTTTCTCATCC
TTTTGTGTCCCTCTCGGCTGAAGATGAGGGAGGGAAGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGACGGGGGGGAGGAGGGACAAGAAAGAGACAG
AGGTTTGATTTACCCCTCGTGTCCTTTGTTGGAGGTCGACGAGGAGGAGA
TATTCTACTACACACGTGATCGGGAGAGGAAGAAAGAGAGAGAGATGGAA
AATAAGGCAAGCCCCTCCCCCCCCTCCCCCCCTCGCCCCTAAAGCAGGAA
GCGGCGAAAAGAGAAGAGAAGAAGAAATACGGGTCGGGCCTCCACAAGCA
AGCACCACGCAAAGAATGAAGAATCGATTTGAAAAAATGAATGAAGGGTT
GAGAGGAAGAATGAGGAAAGGAGTGGAGGAATAGAAACCTT back to topCoding sequence (CDS) from alignment at chr4:1464403..1467893- >NO04G05220.1 ID=NO04G05220.1|Name=NO04G05220.1|organism=Nannochloropsis oceanica|type=CDS|length=1212bp|location=Sequence derived from alignment at chr4:1464403..1467893- (Nannochloropsis oceanica) ATGGCACGCTTCTCCGCCTCCTTCTGCCTCCGCATGTTCGGGGCGGGAGT GGTTCTTGCCACGGCCTTCTCCCTCCAGGCGCCCTTGTCCAGCCGCAGCA CCGCGGCCCCTGCCGGCAAGTCCCTGGCATTTGCTCCCCCCAAGGCGGCG GCCGGCGTGCCTGCCGCGGCCGGTGTGATGAAGGAGAACGACTTCACCTT CCGCCTGCAGTCCGTTGCCGGGGGTGCCGCCGCCGCGCCCGCCCCCAAGA AAAACGCGCTCGTCGATAAGCTCTGGAACGAGGACACCAAGCTGGCCGCG TACATCTCGGTGTGGTACCTGGGCAACATTTACTACAACATTTACAACAA GAAGGCCTTGAATATGCTCGGCAAAAACGGCGAGGGTCACTGGGCCTTGG CTGCCATCCAGCTGCTGGTGGGTGCCTGCTTCGTCATTCCTCAGTGGGTG CTGGGCGTGCGAGCCAAGCCCGGGCTGACTCTCGCGCAGTGGAAGGCACT TGCCCCCATCGGTGTGTTCAACGCTGCCGCCCACGGAGCCTCCGTGCTGG CTCTCGGCGCGGGTGCCGTGTCCTTCGGGCAGATCGTCAAGGCCGGCGAG CCCGTGCACGCCGCCCTGACTGGCGCTGTTCTCCTCAAGGAGATCGACCA CCCCCTCGTGTATCTGTCCCTGCTGCCCATCATCGGTGGTGTGGCGCTTG CCTCCCTCAAGGAGCTCGACTTTAAGCTCAAGGCCCTCATCTTCGCATTG GCTGCCAACCAGGCCGCGGCCTTCAAGAACGTGGTGGCCAAGAAGACGAA CAAGGAGAATTGGGCGAAGAAGCTCGGGCCCCAGAACATGTACGCCGTGG TAACTATCTTGGCCTTCCTGGCCACCATGCCGCTCGTCCTCTTCCAGGAC CTTCCCCACCTTAAGGGATTGTACCAGGGCCTCGAGGCCGCCGGCAAGCT CAAGGATCTGGTGAAGTTCGCCGTCTTCTCGGGCCTCAATTTCTACATCT ACAATGAGTTCTCTTTTCTGGCGCTCTCCAAGCTCTCGCCCGTCACCCAC TCCGTGGCCAACACCCTCAAGCGCGTGGTGATCATCGTGGCCTCTTGCAT CGTCTTCCGCACGCCCACCACCTTCCTGGGCAACGTGGGCTCGGCCATCG CCGTGTTGGGAACCCTCCTCTACTCCCTTTCCAAGAAGAAGTACTCCGGC TCCGCGCACTAA back to top
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