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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr4 | genome | chr4:1423351..1427390 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G05110.1 vs.
Match: EWM28922.1 (EF-Hand 1, calcium-binding site [Nannochloropsis gaditana]) HSP 1 Score: 518.5 bits (1334), Expect = 2.800e-143 Identity = 286/514 (55.64%), Postives = 340/514 (66.15%), Query Frame = 0
Query: 78 MTDVLSACDIDYVCLGNHETDIPHRAMLERVAESNFVWINSSMPALPLLDVPLDATKLPDHAVIEAGDTRVALLGLLTDDPSLYRPNSFGSAAILPLI-------PTAERLREKLYQTGNVDCVLAMTHQSIAMDRILARKRLFPLILGGHDHEPYIETYAKGGREGEREEGQQDGGSYCRIPWSAASLEEEEGGRAGLSARSTLVKVGMDAKCFGFVDVAFLQEEGEWEEEGEGEGEEEREGEGGPSKRRRRKRLLSPEVTVKTREAITFEPDATVNARVAVHLRVLEELERAKLCRVPTGMPLSSKGVRKMQTSVGSMLLTAARKALQVDCCFVNGGNIRAGVAYPITQKHFSYKDLKAEIPFSCNMVTLRVPGAILSSLLQFSRRFSLLDPPVEKGGFLQVDNGVHTDPSSHAITHIMHQPLDPSKTYSMATTWGVISGIDDLRPILDYIKDHPEMDFPSSPDCGRGLKEVLVAYHSRTLWWNLAKQIGFKAMDTNGDGVLCRKEVEAATR 585
M DVL+AC +DYVCLGNHETDIPHR MLER+ ES+FVWINSS+P+LPLLDVPL+ K+P++A++E G VALLG S+ + PLI P E E + G G P + + G E ER EG+++ +S R TLVKVGMDA G VDVAF EEG EG EG E G+ G KRRRR+RL EV +EA +F D V RV VH RVLEELERA LC VP PLSSKGVRKMQTSVG+MLLTAAR+ALQVDC FVNGGNIRA VAYP++QK F+YKDLKAEIPF C MVT+R+PG++LSSLLQ+SR+F+LLDPPVEKGGFLQVD GV D S+HAITH+ +PL+ S+ YS+ATTWGV+SGIDDLRPILDY + HPE FP+S + GRGLKEVLVA+HSR LWW+LAK +GF+AMDT+GDGVL +KEV AAT+
Sbjct: 1 MVDVLNACGVDYVCLGNHETDIPHRDMLERIVESDFVWINSSIPSLPLLDVPLEPQKIPEYALLEVGGIEVALLGNAEGKDSIAADRELAQTRLFPLILGGHDHDPFLETYGEGGREGGKEGSPGG----------------------GWSSRIPSAASLQEWGGERERVEGEKE-----------------------VSERCTLVKVGMDATWIGVVDVAFGAEEG--GAEGGAEGGREDGGDAGNGKRRRRRRL---EVKACIKEAASFAVDPAVQERVEVHWRVLEELERAVLCPVPAQTPLSSKGVRKMQTSVGTMLLTAARQALQVDCVFVNGGNIRASVAYPLSQKVFTYKDLKAEIPFPCEMVTVRLPGSVLSSLLQYSRQFALLDPPVEKGGFLQVDEGVRVDASTHAITHVQGRPLEASRMYSLATTWGVVSGIDDLRPILDYREAHPEAVFPTSAEAGRGLKEVLVAHHSRMLWWDLAKHVGFRAMDTDGDGVLSQKEVAAATQ 464
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G05110.1 ID=NO04G05110.1|Name=NO04G05110.1|organism=Nannochloropsis oceanica|type=mRNA|length=1974bp
AACACAAACACAGGCCCACTTCCACTAAGCGTCAAGTGGCTTCTCTGCCG
GTCTCCCAGCTGTCTGTCGCACCTGTCCAAGCAGCCCAAAGCTGCCTCCC
GCCCAAGCCCATGACCAACACGACTAGCACTCGCAACAAGCGTGTAATCA
TACGTTTCTTGACAATCAATGACGTCTACGAGCTTGACAATCTGCCTCGG
TTCGCGACCGCCGTCCGCGAGACACGTGCGGCAGCGCGAAAAGAGGAGGG
GGAAGGGGATGTGGTGATCAAAGTATTGGCGGTCGTAGCGGGTGATTTCC
TTGCGCCGTCCTTGTTGTCCTGCTTGGACGATGGCAGAGGCATGACGGAC
GTCTTGAGCGCCTGTGACATTGACTATGTTTGCCTGGGCAACCACGAGAC
TGATATACCCCATCGGGCTATGCTAGAGCGAGTCGCAGAGAGCAATTTTG
TCTGGATCAATTCTTCCATGCCGGCCTTGCCGTTGCTGGACGTGCCGCTG
GACGCCACCAAGCTGCCTGACCACGCCGTGATTGAAGCTGGGGACACTCG
AGTGGCCTTGCTGGGCCTCCTCACCGACGATCCTTCCCTTTACCGGCCCA
ATTCTTTCGGGTCCGCGGCGATCCTTCCCCTTATCCCCACGGCCGAACGC
CTGCGCGAGAAGCTCTATCAGACAGGAAATGTGGATTGTGTGCTGGCCAT
GACGCATCAGTCCATTGCCATGGATCGCATTTTGGCGCGAAAACGCCTTT
TCCCCCTTATTTTGGGAGGCCACGACCACGAACCCTACATAGAGACTTAC
GCGAAGGGAGGGAGGGAGGGAGAGAGGGAGGAAGGGCAGCAGGACGGTGG
AAGCTATTGCCGGATCCCTTGGTCGGCGGCGTCGCTGGAGGAGGAGGAGG
GCGGGAGGGCGGGGTTGTCGGCGAGGAGCACCTTGGTCAAGGTGGGCATG
GACGCGAAGTGCTTCGGATTTGTGGACGTGGCATTTCTTCAGGAGGAGGG
GGAGTGGGAGGAAGAGGGGGAGGGGGAGGGGGAGGAAGAGAGGGAGGGGG
AGGGAGGGCCGAGCAAGAGGAGACGGAGGAAAAGGTTGTTGAGCCCTGAG
GTGACGGTGAAGACCAGAGAGGCCATTACCTTTGAACCGGACGCGACGGT
GAACGCGCGAGTGGCGGTGCACTTGAGAGTGTTGGAGGAGTTGGAGCGCG
CGAAACTTTGTCGGGTCCCGACGGGCATGCCTCTTTCCTCCAAGGGCGTC
CGAAAGATGCAAACGTCCGTGGGCTCCATGCTTCTGACAGCGGCTCGAAA
GGCCTTGCAGGTGGATTGTTGCTTCGTTAATGGCGGCAACATCAGGGCTG
GCGTGGCCTATCCCATCACACAGAAGCACTTCAGCTACAAAGATCTCAAA
GCCGAGATCCCTTTCTCTTGCAACATGGTGACACTCCGTGTGCCAGGTGC
CATCCTCTCCTCTCTACTCCAGTTTTCGCGTCGATTTTCCCTTCTTGACC
CGCCCGTGGAAAAAGGAGGATTCTTGCAGGTGGACAACGGCGTCCACACC
GATCCGTCCTCCCACGCTATTACGCACATCATGCACCAGCCCCTGGACCC
CTCCAAGACATACTCCATGGCCACCACCTGGGGTGTCATTTCGGGGATCG
ACGACCTCCGACCCATCTTAGACTACATTAAGGACCACCCGGAGATGGAC
TTTCCGTCGTCGCCTGATTGCGGCCGAGGCCTGAAGGAAGTGCTGGTGGC
ATACCACAGTCGCACCCTGTGGTGGAATTTGGCCAAACAGATAGGGTTTA
AAGCCATGGACACGAATGGGGATGGAGTCCTGTGCCGGAAGGAGGTGGAG
GCTGCAACACGCGTAAGTTTATTAAATTTGATGTAACTCTGCGTAAAGCC
TTTTGCCACAATGCACCTGTACAAACAGACCATAAACAGAAGGCCTCTTG
CGCGATCATGTGGGTTGTCTCGGG back to topprotein sequence of NO04G05110.1 >NO04G05110.1-protein ID=NO04G05110.1-protein|Name=NO04G05110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=592bp
MTNTTSTRNKRVIIRFLTINDVYELDNLPRFATAVRETRAAARKEEGEGD
VVIKVLAVVAGDFLAPSLLSCLDDGRGMTDVLSACDIDYVCLGNHETDIP
HRAMLERVAESNFVWINSSMPALPLLDVPLDATKLPDHAVIEAGDTRVAL
LGLLTDDPSLYRPNSFGSAAILPLIPTAERLREKLYQTGNVDCVLAMTHQ
SIAMDRILARKRLFPLILGGHDHEPYIETYAKGGREGEREEGQQDGGSYC
RIPWSAASLEEEEGGRAGLSARSTLVKVGMDAKCFGFVDVAFLQEEGEWE
EEGEGEGEEEREGEGGPSKRRRRKRLLSPEVTVKTREAITFEPDATVNAR
VAVHLRVLEELERAKLCRVPTGMPLSSKGVRKMQTSVGSMLLTAARKALQ
VDCCFVNGGNIRAGVAYPITQKHFSYKDLKAEIPFSCNMVTLRVPGAILS
SLLQFSRRFSLLDPPVEKGGFLQVDNGVHTDPSSHAITHIMHQPLDPSKT
YSMATTWGVISGIDDLRPILDYIKDHPEMDFPSSPDCGRGLKEVLVAYHS
RTLWWNLAKQIGFKAMDTNGDGVLCRKEVEAATRVSLLNLM* back to topmRNA from alignment at chr4:1423351..1427390+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G05110.1 ID=NO04G05110.1|Name=NO04G05110.1|organism=Nannochloropsis oceanica|type=mRNA|length=4040bp|location=Sequence derived from alignment at chr4:1423351..1427390+ (Nannochloropsis oceanica)
AACACAAACACAGGCCCACTTCCACTAAGCGTCAAGTGGCTTCTCTGCCG
GTCTCCCAGCTGTCTGTCGCACCTGTCCAAGCAGCCCAAAGCTGCCTCCC
GCCCAAGCCCATGACCAACACGACTAGCACTCGCAACAAGCGTGTAATCA
TACGTTTCTTGACAATCAATGACGTCTACGAGCTTGACAATCTGCCTCGG
TTCGCGACCGCCGTCCGCGAGGTACGTCAGCAGCTTCAGTGCCAGGAATG
CGTGTCGAGGGGGAAGGCGAGAGAAAAGCGGAAACGAATGCAACGGGGAG
ACTCGACGTGGATCTGTGAATGGAAAGTGTGAATGTATGCATTAGACCTG
TGATTGATCTGGGAGAGCTGTGGGAGAAATATAAAAAAAAACACTTGTAA
ACAAGACCCTCCCTTACCACATGGCACAGACACGTGCGGCAGCGCGAAAA
GAGGAGGGGGAAGGGGATGTGGTGATCAAAGTATTGGCGGTCGTAGCGGG
TGATTTCCTTGCGCCGTCCTTGTTGTCCTGCTTGGACGATGGCAGAGGTA
CGTGAATAAAAGAGTGGGGGTTGGGGGAGGAAAGAGAGAAGGAGTCAGAG
TGGAGGAGCCAGGGACTGCTCGCCATGTCCGCACTTTTGAGAAATGCATG
CCATAATGGACTCTATGAACATATCTCTCTCCCCGTCAACTTTCCCAGAA
GACTGTTGTTTTATACCGAATCCGCTCTCCTTCCGCTCTCTCCCTCTCTT
CTTCCTTCCTTCTGTCCTCGCCCCTGCAGGCATGACGGACGTCTTGAGCG
CCTGTGACATTGACTATGTTTGCCTGGGCAACCACGAGACTGATATACCC
CATCGGGCTATGCTAGAGCGAGTCGCAGAGAGCAATTTTGTCTGGGTAGG
GCTAGTAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGGAGGAGTAG
GCACATTTGCGATCCTCCTTCATGCCTCAAACAGCAAGCCGGTTGGTGCT
ATAATGACGACCCCCTCCTTCTTTCCCCTTTCCCCTTCTTCTTCTTCTTT
CTCTAGATCAATTCTTCCATGCCGGCCTTGCCGTTGCTGGACGTGCCGCT
GGACGCCACCAAGCTGCCTGACCACGCCGTGATTGAAGCTGGGGACACTC
GAGTGGCCTTGCTGGGTAAGGAGGGAGGGAGGGAGGAGGGGAGGGAGAGA
TAGGTGGAAGGGGGATAACGGAATGAAGTCAAAAGAGGGAGGCCAGGCTT
TCGACCACTGACCCCGCCGGTTGTCATCGCCCTTCCTCCCCCCTGCCTCC
CTCCCGCCCTCCTTCCAGGCCTCCTCACCGACGATCCTTCCCTTTACCGG
CCCAATTCTTTCGGGTCCGCGGCGATCCTTCCCCTTATCCCCACGGCCGA
ACGCCTGCGCGAGAAGCTCTATCAGACAGGAAATGTGGATTGTGTGCTGG
CCATGACGCATCAGGTAAAGAGCGGGGAGGGGGAAAGAAGGGAGGGAGGG
AGGAGGGACTGGAAACTGGTGCGTATAGACTTTTACCATTGGAATTGCTT
TCACCCTACTCACCCCTCGCTCCTTCCCTCCCTCTCTTCCTCCCCACGTT
CTGGCAGTCCATTGCCATGGATCGCATTTTGGCGCGAAAACGCCTTTTCC
CCCTTATTTTGGGAGGCCACGACCACGAACCCTACATAGAGACTTACGCG
AAGGGAGGGAGGGAGGGAGAGAGGGAGGAAGGGCAGCAGGACGGTGGAAG
CTATTGCCGGATCCCTTGGTCGGCGGCGTCGCTGGAGGAGGAGGAGGGCG
GGAGGGCGGGGTTGTCGGCGAGGAGCACCTTGGTCAAGGTGGGCATGGAC
GCGAAGTGCTTCGGATTTGTGGACGTGGCATTTCTTCAGGAGGAGGGGGA
GTGGGAGGAAGAGGGGGAGGGGGAGGGGGAGGAAGAGAGGGAGGGGGAGG
GAGGGCCGAGCAAGAGGAGACGGAGGAAAAGGTTGTTGAGCCCTGAGGTG
ACGGTACGTGTGGGGTTGAAGGGAAAAAAAAATGAGTTGAGCGCCAGCTT
ACCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCTCCCTCCCTCCTTTTCGA
TTTCCTTTCTCCTACATTTCACGTAGGTGAAGACCAGAGAGGCCATTACC
TTTGAACCGGACGCGACGGTGAACGCGCGAGTGGCGGTGCACTTGAGAGT
GTTGGAGGTAGGGGGGAAGGGCGGGAGGGAGGGCCGTCGGTCGTGGATAC
ACACGCACGCGGGATGGAGGGAAAGAGGGAGTAAAGGAGGGAGGGAACGA
GGGATAAAAGATAGGGAGAGAGACTGACGGTGGTAAGGAATCACCACGAA
CACAGGAGTTGGAGCGCGCGAAACTTTGTCGGGTCCCGACGGGCATGCCT
CTTTCCTCCAAGGGCGTCCGAAAGGTGGGTCGTGTGTGGGTGGTTGGGAG
GGAGGAGGGAGGGAGGGAGGGGAGAAAGGAAGGAGGGAAGGAAAGGAAAG
TGAATCATGTACGAGGCCGTGCAATCATATAAATGAGTTTACAAAGGATT
TCCTCCATTTTCCCCTCCCTCTTGTCTTCCTCCCTCTCGCCCTTCCTCCT
CCACAGATGCAAACGTCCGTGGGCTCCATGCTTCTGACAGCGGCTCGAAA
GGCCTTGCAGGTAAGAGGGATGAGGGTGGGGGGGGAGGGAGGCACGGAAT
TAGGGATAAGCGAAGGGGGGCGAGGCGGGTGGCTGGGGGGTAGAGGAGGG
CAAGGAGTTAGTGGAGAAAGGTGATAGTGGTTGTTGTTGACCGTTGATCA
CCCATTGGTTATTCATATGCCGTCCTTCCTTCTCGACCTCCCTCCCTCCC
TCCCTCCCGCCCTTCCTCGGTGTCCAGGTGGATTGTTGCTTCGTTAATGG
CGGCAACATCAGGGCTGGCGTGGCCTATCCCATCACACAGAAGCACTTCA
GCTACAAAGATCTCAAAGTACGATCCCGCTCCCTCCCTTCCTCCCTCCCT
CCCTTCCTTCCTGCTTTCCTCACTTCCTTCCTTCATCCCCCCCCCCTCCC
TCCCTCCCTCCCTCCTCAATCTTCCACCCCCTTACATGGAAAACACCCTC
CCACTTGTCCTGCACCCTCCCTCCCCCTTATCCCTTCTTCCCTTGCTCCT
TCCCTCCCTCCCCTCCTTCAGGCCGAGATCCCTTTCTCTTGCAACATGGT
GACACTCCGTGTGCCAGGTGCCATCCTCTCCTCTCTACTCCAGTTTTCGC
GTCGATTTTCCCTTCTTGACCCGCCCGTGGAAAAAGGAGGATTCTTGCAG
GTACCGAGGGAGGGATGGAGGGAACGAACGAACGAACGAGGGAGGAACGA
AGGGGGAATGGTTTATCACATGCAACTTCCTTAAAATGAGACGACGCGCG
AGGACATTGCGCAAGCCTTTCATTCTCAACATTGCGAGCCCTCCCTCCCC
TTCCCCCACGTCCCTCCTTCCCTTCTTTCCTCTTGCCCTCCTCAGGTGGA
CAACGGCGTCCACACCGATCCGTCCTCCCACGCTATTACGCACATCATGC
ACCAGCCCCTGGACCCCTCCAAGACATACTCCATGGCCACCACCTGGGGT
GTCATTTCGGGGATCGACGACCTCCGACCCATCTTAGGTAGGTAGATAGC
TGGTCGTGGAGGGAAAGCGGGCAAGGAGAGGACGGCAGAGGTGAAGGAAA
TCTGACCTTGGCCTCTTTTCCTTGGCATGTTCCTCAGACTACATTAAGGA
CCACCCGGAGATGGACTTTCCGTCGTCGCCTGATTGCGGCCGAGGCCTGA
AGGAAGTGCTGGTGGCATACCACAGTCGCACCCTGTGGTGGAATTTGGCC
AAACAGATAGGGTTTAAAGCCATGGACACGAATGGGGATGGAGTCCTGTG
CCGGAAGGAGGTGGAGGCTGCAACACGCGTAAGTTTATTAAATTTGATGT
AACTCTGCGTAAAGCCTTTTGCCACAATGCACCTGTACAAACAGACCATA
AACAGAAGGCCTCTTGCGCGATCATGTGGGTTGTCTCGGG back to topCoding sequence (CDS) from alignment at chr4:1423351..1427390+ >NO04G05110.1 ID=NO04G05110.1|Name=NO04G05110.1|organism=Nannochloropsis oceanica|type=CDS|length=1776bp|location=Sequence derived from alignment at chr4:1423351..1427390+ (Nannochloropsis oceanica)
ATGACCAACACGACTAGCACTCGCAACAAGCGTGTAATCATACGTTTCTT
GACAATCAATGACGTCTACGAGCTTGACAATCTGCCTCGGTTCGCGACCG
CCGTCCGCGAGACACGTGCGGCAGCGCGAAAAGAGGAGGGGGAAGGGGAT
GTGGTGATCAAAGTATTGGCGGTCGTAGCGGGTGATTTCCTTGCGCCGTC
CTTGTTGTCCTGCTTGGACGATGGCAGAGGCATGACGGACGTCTTGAGCG
CCTGTGACATTGACTATGTTTGCCTGGGCAACCACGAGACTGATATACCC
CATCGGGCTATGCTAGAGCGAGTCGCAGAGAGCAATTTTGTCTGGATCAA
TTCTTCCATGCCGGCCTTGCCGTTGCTGGACGTGCCGCTGGACGCCACCA
AGCTGCCTGACCACGCCGTGATTGAAGCTGGGGACACTCGAGTGGCCTTG
CTGGGCCTCCTCACCGACGATCCTTCCCTTTACCGGCCCAATTCTTTCGG
GTCCGCGGCGATCCTTCCCCTTATCCCCACGGCCGAACGCCTGCGCGAGA
AGCTCTATCAGACAGGAAATGTGGATTGTGTGCTGGCCATGACGCATCAG
TCCATTGCCATGGATCGCATTTTGGCGCGAAAACGCCTTTTCCCCCTTAT
TTTGGGAGGCCACGACCACGAACCCTACATAGAGACTTACGCGAAGGGAG
GGAGGGAGGGAGAGAGGGAGGAAGGGCAGCAGGACGGTGGAAGCTATTGC
CGGATCCCTTGGTCGGCGGCGTCGCTGGAGGAGGAGGAGGGCGGGAGGGC
GGGGTTGTCGGCGAGGAGCACCTTGGTCAAGGTGGGCATGGACGCGAAGT
GCTTCGGATTTGTGGACGTGGCATTTCTTCAGGAGGAGGGGGAGTGGGAG
GAAGAGGGGGAGGGGGAGGGGGAGGAAGAGAGGGAGGGGGAGGGAGGGCC
GAGCAAGAGGAGACGGAGGAAAAGGTTGTTGAGCCCTGAGGTGACGGTGA
AGACCAGAGAGGCCATTACCTTTGAACCGGACGCGACGGTGAACGCGCGA
GTGGCGGTGCACTTGAGAGTGTTGGAGGAGTTGGAGCGCGCGAAACTTTG
TCGGGTCCCGACGGGCATGCCTCTTTCCTCCAAGGGCGTCCGAAAGATGC
AAACGTCCGTGGGCTCCATGCTTCTGACAGCGGCTCGAAAGGCCTTGCAG
GTGGATTGTTGCTTCGTTAATGGCGGCAACATCAGGGCTGGCGTGGCCTA
TCCCATCACACAGAAGCACTTCAGCTACAAAGATCTCAAAGCCGAGATCC
CTTTCTCTTGCAACATGGTGACACTCCGTGTGCCAGGTGCCATCCTCTCC
TCTCTACTCCAGTTTTCGCGTCGATTTTCCCTTCTTGACCCGCCCGTGGA
AAAAGGAGGATTCTTGCAGGTGGACAACGGCGTCCACACCGATCCGTCCT
CCCACGCTATTACGCACATCATGCACCAGCCCCTGGACCCCTCCAAGACA
TACTCCATGGCCACCACCTGGGGTGTCATTTCGGGGATCGACGACCTCCG
ACCCATCTTAGACTACATTAAGGACCACCCGGAGATGGACTTTCCGTCGT
CGCCTGATTGCGGCCGAGGCCTGAAGGAAGTGCTGGTGGCATACCACAGT
CGCACCCTGTGGTGGAATTTGGCCAAACAGATAGGGTTTAAAGCCATGGA
CACGAATGGGGATGGAGTCCTGTGCCGGAAGGAGGTGGAGGCTGCAACAC
GCGTAAGTTTATTAAATTTGATGTAA back to top
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