NO04G05090.1, NO04G05090.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G05090.1
Unique NameNO04G05090.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1230
Alignment locationchr4:1418292..1419521 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1418292..1419521 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G05090.1 vs.
Match: EWM28932.1 (hypothetical protein Naga_100142g5 [Nannochloropsis gaditana])

HSP 1 Score: 85.9 bits (211), Expect = 3.200e-13
Identity = 142/463 (30.67%), Postives = 204/463 (44.06%), Query Frame = 0 
Query:   14 EFPVPGSKRKEPTRRTGNSSSNSSRSLHPLNLQQQQQLPDPFFQQAPHRQSNNRLNGLRLDWLAEHHQQQKSG-PVPCNLRDNCHNSS-QTQYYPTHRRGGGGLLLPEEGERKNAAGGRGEGGEEGSGNGSGPGSPSIIVHSYAGDLASIAPASTVAVVVE-PASFNQHRRFHHHL-----HSRPSFLTHTGECGGREFGGREQEGQYRHRNHA---VSPLTSPTVSE------DSGGEEDIEREEGEGW--GGRGQQRQEQEGLNTLQEQ-----QHHKIQRQLRKRTCLGQEEALMKKEKAGEDMCVEDDDHNHGQQQLQQVITPSSLVMHAFGQGMTTTEIILMQQQ---------QQQQQHHQQQQQQQQQCGFMLPHSWA----------MGEAGEREGGIEG------------------------GVAYNDLPTSNSGIEAYNNTNSQERIFPAAG 410
            +FPV G KRK P+RRT            P +  + ++       Q    Q N+    L+L  L +  + Q+ G P+  +  ++  N+     Y+PTHRRGGGGL+LPE  E     GGR     E  G GS PGSP+ +  S  GDLAS AP STVA V   P+  ++++R    +       + S L  T           E    Y  R  A   +SPLTSPT SE      D GG  DI   E   W   G+G +  + + + ++  Q     Q  +  RQ RKRT +G  + L   E A EDM   D D  H Q Q ++      L  H FGQ +TT EII  +Q+         Q++ + H+ +Q   +     L    A          M    +    ++                         G++   LP+S+SGIEA+N +N++++IFPAAG
Sbjct:   17 DFPVAGDKRKGPSRRTT-----------PKSCYENKEQAILCASQGMCEQGNHPAMPLKLGCLVQPQRHQQPGSPISAHAVNSTRNNGIHRPYHPTHRRGGGGLVLPEYYE-----GGR---RMEVEGVGSCPGSPA-LPSSSLGDLASEAPVSTVAAVGSLPSCQSRYQRPQPRIGQGRYQPQASALART--------ASGEWRSTYPERGDAEPLISPLTSPTASEGSSDSVDDGG--DIVGRESVAWELRGKGPRLPDMQRVLSVDSQKVLSDQERRRSRQQRKRTRVGGWKPL--GELATEDM---DMDGAHVQPQGKE---GPHLSSHLFGQALTTKEIITRRQEHQHAEELKRQKRLREHEHEQLAIRTASLFLSAKPATSSISCCIPDMDRKEQERPQLQEQIQCARSSRSGVETWQGNEERVGEGISQGTLPSSHSGIEAFNLSNTKDKIFPAAG 441
The following BLAST results are available for this feature:
BLAST of NO04G05090.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
100200300400500600700800900100011001200Expect = 3.20e-13 / Id = 30.67SequenceEWM28932.1
Match NameE-valueIdentityDescription
EWM28932.13.200e-1330.67hypothetical protein Naga_100142g5 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G05090NO04G05090Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G05090.1NO04G05090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G05090.1.cds1NO04G05090.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G05090.1 ID=NO04G05090.1|Name=NO04G05090.1|organism=Nannochloropsis oceanica|type=mRNA|length=1230bp
ATGTCAGACGACGAGCTCTCCATGGAGACGGAGCATGACGAGTTCCCGGT
GCCAGGTAGCAAGAGAAAGGAGCCCACCCGGCGCACAGGCAACAGCAGCA
GCAACAGCAGTCGTAGTCTTCATCCTCTTAACCTACAGCAGCAGCAGCAA
CTTCCAGACCCTTTCTTCCAGCAGGCTCCGCATCGGCAATCAAACAATCG
CCTCAACGGCCTACGGCTGGACTGGCTTGCCGAGCACCACCAGCAGCAAA
AGAGCGGACCAGTTCCGTGCAATTTGAGAGACAATTGTCATAATAGCTCC
CAGACTCAATACTATCCGACGCACCGAAGGGGCGGGGGTGGTCTGCTCTT
GCCAGAAGAAGGAGAAAGGAAAAACGCTGCTGGAGGTCGAGGAGAGGGCG
GGGAGGAAGGCAGCGGCAACGGATCCGGTCCCGGAAGTCCCTCGATTATT
GTGCATTCTTATGCAGGGGATCTAGCAAGTATAGCGCCAGCCTCGACTGT
GGCGGTGGTGGTTGAACCGGCTTCCTTCAATCAGCATCGCCGTTTCCACC
ATCATCTTCACTCCCGTCCCTCTTTCTTGACCCACACAGGCGAATGTGGA
GGAAGAGAGTTTGGAGGAAGAGAACAAGAAGGACAATATAGACATCGCAA
CCACGCAGTCTCTCCTTTGACTTCACCCACTGTCTCCGAGGACTCGGGAG
GGGAGGAGGACATTGAGAGGGAGGAGGGGGAGGGGTGGGGTGGACGGGGT
CAGCAGCGGCAGGAGCAGGAGGGGCTGAATACTCTTCAAGAACAACAGCA
CCATAAGATACAGCGGCAGCTACGAAAACGTACCTGCCTGGGTCAGGAGG
AGGCACTGATGAAGAAGGAGAAAGCGGGCGAGGACATGTGTGTGGAAGAT
GATGATCACAATCACGGGCAGCAGCAGCTGCAGCAAGTCATTACCCCTTC
TTCTCTCGTCATGCATGCCTTCGGCCAAGGGATGACGACTACGGAGATTA
TTCTTATGCAGCAGCAGCAGCAGCAGCAGCAGCATCATCAGCAGCAACAG
CAGCAACAGCAGCAGTGTGGGTTCATGTTGCCCCATTCCTGGGCGATGGG
AGAGGCAGGAGAACGAGAGGGTGGAATAGAGGGAGGGGTAGCGTATAATG
ACCTTCCCACGAGCAACAGCGGGATTGAGGCCTATAACAACACCAATTCT
CAAGAGAGAATCTTCCCGGCGGCTGGATAG
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protein sequence of NO04G05090.1

>NO04G05090.1-protein ID=NO04G05090.1-protein|Name=NO04G05090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=410bp
MSDDELSMETEHDEFPVPGSKRKEPTRRTGNSSSNSSRSLHPLNLQQQQQ
LPDPFFQQAPHRQSNNRLNGLRLDWLAEHHQQQKSGPVPCNLRDNCHNSS
QTQYYPTHRRGGGGLLLPEEGERKNAAGGRGEGGEEGSGNGSGPGSPSII
VHSYAGDLASIAPASTVAVVVEPASFNQHRRFHHHLHSRPSFLTHTGECG
GREFGGREQEGQYRHRNHAVSPLTSPTVSEDSGGEEDIEREEGEGWGGRG
QQRQEQEGLNTLQEQQHHKIQRQLRKRTCLGQEEALMKKEKAGEDMCVED
DDHNHGQQQLQQVITPSSLVMHAFGQGMTTTEIILMQQQQQQQQHHQQQQ
QQQQQCGFMLPHSWAMGEAGEREGGIEGGVAYNDLPTSNSGIEAYNNTNS
QERIFPAAG*
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mRNA from alignment at chr4:1418292..1419521+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G05090.1 ID=NO04G05090.1|Name=NO04G05090.1|organism=Nannochloropsis oceanica|type=mRNA|length=1230bp|location=Sequence derived from alignment at chr4:1418292..1419521+ (Nannochloropsis oceanica)
ATGTCAGACGACGAGCTCTCCATGGAGACGGAGCATGACGAGTTCCCGGT
GCCAGGTAGCAAGAGAAAGGAGCCCACCCGGCGCACAGGCAACAGCAGCA
GCAACAGCAGTCGTAGTCTTCATCCTCTTAACCTACAGCAGCAGCAGCAA
CTTCCAGACCCTTTCTTCCAGCAGGCTCCGCATCGGCAATCAAACAATCG
CCTCAACGGCCTACGGCTGGACTGGCTTGCCGAGCACCACCAGCAGCAAA
AGAGCGGACCAGTTCCGTGCAATTTGAGAGACAATTGTCATAATAGCTCC
CAGACTCAATACTATCCGACGCACCGAAGGGGCGGGGGTGGTCTGCTCTT
GCCAGAAGAAGGAGAAAGGAAAAACGCTGCTGGAGGTCGAGGAGAGGGCG
GGGAGGAAGGCAGCGGCAACGGATCCGGTCCCGGAAGTCCCTCGATTATT
GTGCATTCTTATGCAGGGGATCTAGCAAGTATAGCGCCAGCCTCGACTGT
GGCGGTGGTGGTTGAACCGGCTTCCTTCAATCAGCATCGCCGTTTCCACC
ATCATCTTCACTCCCGTCCCTCTTTCTTGACCCACACAGGCGAATGTGGA
GGAAGAGAGTTTGGAGGAAGAGAACAAGAAGGACAATATAGACATCGCAA
CCACGCAGTCTCTCCTTTGACTTCACCCACTGTCTCCGAGGACTCGGGAG
GGGAGGAGGACATTGAGAGGGAGGAGGGGGAGGGGTGGGGTGGACGGGGT
CAGCAGCGGCAGGAGCAGGAGGGGCTGAATACTCTTCAAGAACAACAGCA
CCATAAGATACAGCGGCAGCTACGAAAACGTACCTGCCTGGGTCAGGAGG
AGGCACTGATGAAGAAGGAGAAAGCGGGCGAGGACATGTGTGTGGAAGAT
GATGATCACAATCACGGGCAGCAGCAGCTGCAGCAAGTCATTACCCCTTC
TTCTCTCGTCATGCATGCCTTCGGCCAAGGGATGACGACTACGGAGATTA
TTCTTATGCAGCAGCAGCAGCAGCAGCAGCAGCATCATCAGCAGCAACAG
CAGCAACAGCAGCAGTGTGGGTTCATGTTGCCCCATTCCTGGGCGATGGG
AGAGGCAGGAGAACGAGAGGGTGGAATAGAGGGAGGGGTAGCGTATAATG
ACCTTCCCACGAGCAACAGCGGGATTGAGGCCTATAACAACACCAATTCT
CAAGAGAGAATCTTCCCGGCGGCTGGATAG
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Coding sequence (CDS) from alignment at chr4:1418292..1419521+

>NO04G05090.1 ID=NO04G05090.1|Name=NO04G05090.1|organism=Nannochloropsis oceanica|type=CDS|length=1230bp|location=Sequence derived from alignment at chr4:1418292..1419521+ (Nannochloropsis oceanica)
ATGTCAGACGACGAGCTCTCCATGGAGACGGAGCATGACGAGTTCCCGGT
GCCAGGTAGCAAGAGAAAGGAGCCCACCCGGCGCACAGGCAACAGCAGCA
GCAACAGCAGTCGTAGTCTTCATCCTCTTAACCTACAGCAGCAGCAGCAA
CTTCCAGACCCTTTCTTCCAGCAGGCTCCGCATCGGCAATCAAACAATCG
CCTCAACGGCCTACGGCTGGACTGGCTTGCCGAGCACCACCAGCAGCAAA
AGAGCGGACCAGTTCCGTGCAATTTGAGAGACAATTGTCATAATAGCTCC
CAGACTCAATACTATCCGACGCACCGAAGGGGCGGGGGTGGTCTGCTCTT
GCCAGAAGAAGGAGAAAGGAAAAACGCTGCTGGAGGTCGAGGAGAGGGCG
GGGAGGAAGGCAGCGGCAACGGATCCGGTCCCGGAAGTCCCTCGATTATT
GTGCATTCTTATGCAGGGGATCTAGCAAGTATAGCGCCAGCCTCGACTGT
GGCGGTGGTGGTTGAACCGGCTTCCTTCAATCAGCATCGCCGTTTCCACC
ATCATCTTCACTCCCGTCCCTCTTTCTTGACCCACACAGGCGAATGTGGA
GGAAGAGAGTTTGGAGGAAGAGAACAAGAAGGACAATATAGACATCGCAA
CCACGCAGTCTCTCCTTTGACTTCACCCACTGTCTCCGAGGACTCGGGAG
GGGAGGAGGACATTGAGAGGGAGGAGGGGGAGGGGTGGGGTGGACGGGGT
CAGCAGCGGCAGGAGCAGGAGGGGCTGAATACTCTTCAAGAACAACAGCA
CCATAAGATACAGCGGCAGCTACGAAAACGTACCTGCCTGGGTCAGGAGG
AGGCACTGATGAAGAAGGAGAAAGCGGGCGAGGACATGTGTGTGGAAGAT
GATGATCACAATCACGGGCAGCAGCAGCTGCAGCAAGTCATTACCCCTTC
TTCTCTCGTCATGCATGCCTTCGGCCAAGGGATGACGACTACGGAGATTA
TTCTTATGCAGCAGCAGCAGCAGCAGCAGCAGCATCATCAGCAGCAACAG
CAGCAACAGCAGCAGTGTGGGTTCATGTTGCCCCATTCCTGGGCGATGGG
AGAGGCAGGAGAACGAGAGGGTGGAATAGAGGGAGGGGTAGCGTATAATG
ACCTTCCCACGAGCAACAGCGGGATTGAGGCCTATAACAACACCAATTCT
CAAGAGAGAATCTTCCCGGCGGCTGGATAG
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Synonyms
Publications