NO04G03980.1, NO04G03980.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G03980.1
Unique NameNO04G03980.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length672
Alignment locationchr4:1070253..1071233 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1070253..1071233 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G03980.1 vs.
Match: EWM28794.1 (adenylate kinase 3 alpha like 1 variant 1 [Nannochloropsis gaditana])

HSP 1 Score: 367.5 bits (942), Expect = 3.000e-98
Identity = 183/223 (82.06%), Postives = 200/223 (89.69%), Query Frame = 0 
Query:    1 MGSVKGLKGLTALILGPPGGGKGTISKKLLKDFGFLHFSTGDVLRKHVREQTAVGMAAQKFMLTGALVPDKVMVDLVVEELASKGHMPRLLLDGFPRTIPQAIALEQHVKIDTVIDLEIPDQTIIERISNRWIHAASGRTYAYDYNPPKVKGVDDVTGEKLVQREDDKAETVKARLDQYKRVTSPLIDHYKYAGNLATFAGTESDVIYPKVKAYLTEFLAKRS 224
            MGSV+ L   TALILGPPGGGKGTISKKLLKDF FLH STGDVLR+HVR+QTAVG AAQ +M+ GALVPD V+VDLVV ELASKGH+PRLLLDGFPRTIPQA+ALE HV ID VIDL+IPDQTIIERISNRWIHAASGRTYAYDYNPPK KGVDDVTGE LVQREDDK ETVKARL+QYK++T+PL+DHY+Y G LATF+GTESDVIYP VKA+L  FLA RS
Sbjct:    1 MGSVQRL---TALILGPPGGGKGTISKKLLKDFNFLHLSTGDVLRRHVRDQTAVGKAAQTYMIRGALVPDNVIVDLVVAELASKGHVPRLLLDGFPRTIPQALALEPHVSIDVVIDLDIPDQTIIERISNRWIHAASGRTYAYDYNPPKQKGVDDVTGEPLVQREDDKEETVKARLEQYKQITTPLVDHYRYQGTLATFSGTESDVIYPYVKAHLDAFLAGRS 220
The following BLAST results are available for this feature:
BLAST of NO04G03980.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28794.13.000e-9882.06adenylate kinase 3 alpha like 1 variant 1 [Nannoch... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G03980NO04G03980Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G03980.1NO04G03980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G03980.1.cds1NO04G03980.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03980.1.cds2NO04G03980.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G03980.1 ID=NO04G03980.1|Name=NO04G03980.1|organism=Nannochloropsis oceanica|type=mRNA|length=672bp
ATGGGTAGCGTAAAGGGGCTGAAAGGCCTCACCGCCCTTATCTTGGGCCC
GCCCGGCGGAGGGAAAGGCACGATTAGCAAGAAGCTGCTCAAGGACTTTG
GCTTCCTACATTTCTCCACGGGAGACGTCTTGCGGAAGCACGTCCGAGAG
CAGACGGCGGTCGGCATGGCGGCCCAGAAGTTTATGCTCACAGGTGCTTT
AGTCCCTGACAAGGTTATGGTGGACCTAGTAGTGGAAGAGCTGGCATCCA
AGGGCCACATGCCTCGCCTGCTTCTGGATGGATTCCCGCGCACCATTCCT
CAAGCCATCGCGTTGGAGCAGCACGTGAAAATTGACACGGTCATTGACCT
TGAAATACCGGACCAGACAATCATCGAGCGGATTTCGAACCGATGGATCC
ACGCCGCATCGGGACGGACGTATGCGTATGACTACAACCCGCCCAAGGTG
AAGGGAGTGGATGACGTGACGGGCGAGAAGCTGGTGCAACGGGAGGACGA
CAAGGCTGAGACGGTCAAGGCACGTCTAGATCAATACAAACGTGTAACAT
CGCCATTGATCGACCACTATAAGTATGCGGGAAATCTGGCGACATTTGCG
GGGACGGAGTCGGATGTGATTTATCCCAAGGTCAAGGCCTATCTGACAGA
GTTTTTGGCCAAGCGGAGTTAG
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protein sequence of NO04G03980.1

>NO04G03980.1-protein ID=NO04G03980.1-protein|Name=NO04G03980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=224bp
MGSVKGLKGLTALILGPPGGGKGTISKKLLKDFGFLHFSTGDVLRKHVRE
QTAVGMAAQKFMLTGALVPDKVMVDLVVEELASKGHMPRLLLDGFPRTIP
QAIALEQHVKIDTVIDLEIPDQTIIERISNRWIHAASGRTYAYDYNPPKV
KGVDDVTGEKLVQREDDKAETVKARLDQYKRVTSPLIDHYKYAGNLATFA
GTESDVIYPKVKAYLTEFLAKRS*
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mRNA from alignment at chr4:1070253..1071233-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G03980.1 ID=NO04G03980.1|Name=NO04G03980.1|organism=Nannochloropsis oceanica|type=mRNA|length=981bp|location=Sequence derived from alignment at chr4:1070253..1071233- (Nannochloropsis oceanica)
ATGGGTAGCGTAAAGGGGCTGAAAGGCCTCACCGCCCTTATCTTGGGCCC
GCCCGGCGGAGGGAAAGGCACGATTAGCAAGAAGCTGCTCAAGGACTTTG
GCTTCCTACATTTCTCCACGGGAGACGTCTTGCGGAAGCACGTCCGAGAG
CAGACGGCGGTCGGCATGGCGGCCCAGAAGTTTATGCTCACAGGTATTTT
TGGTGGGCCTTGGTAGGATAGATATGGACGGGCTGCTGCTGAGGGCGTGG
AGAGGGGAGGGAGGGACGGCGGAGTTTTTTGTTCTCCAACTAGCACACTG
ATGGATGTACGTGCGCGTGAATGTGGGTATGCTTATGCATGAACGCAATG
GGCAATTTCCTGGCTAAAGATAGGATGGAGGCAAGGGGCGCTCTCAAAAG
AAGGGAGCTGGGATCTATCTTTTTCTCATTGCGCTCTCTTAAAGCCTCTC
CACACCCACCCTACTCATCCTCCCTCCCTCCCAATTAATCTTACGCACGT
AGGTGCTTTAGTCCCTGACAAGGTTATGGTGGACCTAGTAGTGGAAGAGC
TGGCATCCAAGGGCCACATGCCTCGCCTGCTTCTGGATGGATTCCCGCGC
ACCATTCCTCAAGCCATCGCGTTGGAGCAGCACGTGAAAATTGACACGGT
CATTGACCTTGAAATACCGGACCAGACAATCATCGAGCGGATTTCGAACC
GATGGATCCACGCCGCATCGGGACGGACGTATGCGTATGACTACAACCCG
CCCAAGGTGAAGGGAGTGGATGACGTGACGGGCGAGAAGCTGGTGCAACG
GGAGGACGACAAGGCTGAGACGGTCAAGGCACGTCTAGATCAATACAAAC
GTGTAACATCGCCATTGATCGACCACTATAAGTATGCGGGAAATCTGGCG
ACATTTGCGGGGACGGAGTCGGATGTGATTTATCCCAAGGTCAAGGCCTA
TCTGACAGAGTTTTTGGCCAAGCGGAGTTAG
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Coding sequence (CDS) from alignment at chr4:1070253..1071233-

>NO04G03980.1 ID=NO04G03980.1|Name=NO04G03980.1|organism=Nannochloropsis oceanica|type=CDS|length=672bp|location=Sequence derived from alignment at chr4:1070253..1071233- (Nannochloropsis oceanica)
ATGGGTAGCGTAAAGGGGCTGAAAGGCCTCACCGCCCTTATCTTGGGCCC
GCCCGGCGGAGGGAAAGGCACGATTAGCAAGAAGCTGCTCAAGGACTTTG
GCTTCCTACATTTCTCCACGGGAGACGTCTTGCGGAAGCACGTCCGAGAG
CAGACGGCGGTCGGCATGGCGGCCCAGAAGTTTATGCTCACAGGTGCTTT
AGTCCCTGACAAGGTTATGGTGGACCTAGTAGTGGAAGAGCTGGCATCCA
AGGGCCACATGCCTCGCCTGCTTCTGGATGGATTCCCGCGCACCATTCCT
CAAGCCATCGCGTTGGAGCAGCACGTGAAAATTGACACGGTCATTGACCT
TGAAATACCGGACCAGACAATCATCGAGCGGATTTCGAACCGATGGATCC
ACGCCGCATCGGGACGGACGTATGCGTATGACTACAACCCGCCCAAGGTG
AAGGGAGTGGATGACGTGACGGGCGAGAAGCTGGTGCAACGGGAGGACGA
CAAGGCTGAGACGGTCAAGGCACGTCTAGATCAATACAAACGTGTAACAT
CGCCATTGATCGACCACTATAAGTATGCGGGAAATCTGGCGACATTTGCG
GGGACGGAGTCGGATGTGATTTATCCCAAGGTCAAGGCCTATCTGACAGA
GTTTTTGGCCAAGCGGAGTTAG
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Synonyms
Publications