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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr4 | genome | chr4:808618..811176 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G03020.1 vs.
Match: EWM28751.1 (hypothetical protein Naga_100002g24 [Nannochloropsis gaditana]) HSP 1 Score: 488.4 bits (1256), Expect = 4.400e-134 Identity = 325/667 (48.73%), Postives = 419/667 (62.82%), Query Frame = 0
Query: 167 PSSSSSPCPAPPTSQPCIR------FTKPTVSQTLLRLAQPRNKIYAERERQREEREIAKTIQENCTFKPNLCQGTEKRAAAAAAASKGEVPKSLPDRLKEKQEAAEAARLRRQEKLELELAAECTFRPVLYTDEARLMSGSTFWSSPLASPCSSPLRRPGQEKPLHQRLGDVQRARRDNLNRLRAREEKKEAAEWTFSPRLCSVSEEIARQRRQEQDYQKMYDQRINDEKDQPQSVKSGAKFDYLAYESQRFLQRRIAKQLDLEQEQLAECHFSPRLCEKTEKLIAHAGLPLDFESRQYVWKEQRQRKAAVIEANKAAEEDEWFRPALKPYSEAIVARLRLRLDQEDINRRHTDSNSNSDDDPVVQRLAVKEIARREAARLHRTEAFYAQYLFQPSLNPVSRALGRPSTTDELAYNWRGEMARNKAFEEAQERFEAECTFQPVLQSSYSSSSLPLAASAPTVPVAATSKAIATRCRQSLSTSALVAIGNVSVPATTKIQLRQPSSLSIAGDWEVRRRDKESLAAKAHAAREAEELQDCTWQPELATKAIPTRRRQKQQQSPVLVRGLGKFIARTQAAAQQREERAIATAALAAGGTKRTGVTTNSGAEQVKTTMARPFQISSRPQGQRGSRASVRAEVEKLAQATLTFRPKTIERRKRAALQNMLE 828
PSS+ P S R T T + L RLAQPRN+IY ERE R E+E K + CTFKP LC+GTEKR AAAAAAS+GEV K LP+RL EK++A+E AR RQ K+ ELA ECTFRPVLYT + G SS + SP P R EK LH+RLGDVQRARR++L RLRA E+ AAEWTF PRLC ++E +ARQRR D EK + + + F L +S+RFLQ+R+A++ E + +C F+P L +KT++L+ AG P FE+RQ +W++ R+ KA +E AAEE+ WF+P L+P SEAIVAR+R + ++ H + VV RLAV+E ARREAAR RT A + + ++PS+NP+SRALGR S +EL YNWRG +ARNKA EEAQ RFEA CTFQP + + +S +SL A ++ IA VA + V + +QP+S AG E RR KE+ AA AAREAEEL+ CTW P L TK + +R R + QSPVLVRGLGKF+AR+QAAAQQR+ +A ATAALA GG + + TN T +RPF++SSRPQ QRGS+A VR+E+E+LA+++LTFRP+TIERRK+A L +LE
Sbjct: 130 PSSTHQPFKTLRASDHAFRRRHHTPTTFATSAAALSRLAQPRNEIYKERESLRREQEALKVAEAGCTFKPTLCEGTEKRVAAAAAASRGEVVKPLPERLMEKKKASEQARRIRQAKVLEELARECTFRPVLYTSASSGSGGRVPPSSTIISPSQCPKR----EKSLHERLGDVQRARREHLARLRAEREEVRAAEWTFQPRLCGMTERMARQRRLGNGNS---DTGTFQEKVKHPLGRQPSTFSRLVRDSERFLQQRMARRSASEARRHVDCRFAPTLAQKTDELLVKAGWPSGFEARQQLWEDYRREKAVAVEQAMAAEEERWFKPVLEPKSEAIVARIRSLRE----SKGHESDERPNLQGSVVHRLAVEERARREAAREARTMAALSDFHYEPSINPLSRALGRSSDIEELTYNWRGVVARNKAAEEAQARFEAACTFQPEISNVHSDASLQRPALGSRSGHVSSKSDIAES----------VARNHGKVKDRSFSGAQQPTS---AGG-EDRRGLKEAQAADTRAAREAEELKACTWSP-LLTKNM-SRPRLDRHQSPVLVRGLGKFLARSQAAAQQRQGQASATAALAVGGAR---MRTNCVPSLYTMTTSRPFRLSSRPQDQRGSQAKVRSELERLARSSLTFRPQTIERRKQAVLHKLLE 766
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G03020.1 ID=NO04G03020.1|Name=NO04G03020.1|organism=Nannochloropsis oceanica|type=mRNA|length=2559bp TCAAGCGATGACGCCCAAGCAGGTCGGCAATGAGAGTCACTTTTGTCAAC GCAAGCCAAAAATACTCATCACTCCTGCACACCACTCAGCACCACAAGCT CGTTCCCATGGCCACTTCGGGCCTGGCCGAGCTGGACCGCATTGACATGC CGCTTCAAAAAACAGAACTTCACTTGTCCAACCCAAGCCAAGTGCCGAGC AGCCGAAGCCTGCTATTATCACTATCAAGACCTTCTGGTGCCTCTTCCCG CCTCTCTCCACCGCCGCTGCACAGCCCCCCGGCCTCGCAAATAGGGTCTG TAGAAGAAGTGCCAGCAGCTCGCGTGGATGCCGCCATTTATTCCCGACTG CAACCGCGACATCTTCCCTCTTCCCCGACGCTAGCAGCAGCACGCTCGAC CCCCCGCCCGCTCCCCTCTTCTTTCATGCCAAGCTCTACACCACCCCCGA CACCACTGTCAGAGCAATCACCATCTATGGCACGCTCAGTCTCACAATTG GTACACTCAACCACCTCCGTCCGCGGCCCTTCCTCATCATCGTCACCATG CCCTGCCCCCCCGACGTCCCAGCCGTGCATTCGCTTTACCAAGCCCACCG TGTCGCAGACGCTCTTGCGGCTCGCACAACCCCGGAACAAAATTTATGCT GAGCGAGAGCGACAACGCGAGGAACGAGAAATAGCCAAGACGATACAAGA AAATTGTACATTCAAGCCCAACCTTTGTCAAGGCACGGAGAAGCGCGCCG CCGCTGCTGCCGCCGCCTCCAAGGGCGAGGTGCCCAAGTCCTTGCCAGAC CGTCTAAAAGAGAAGCAAGAAGCGGCCGAGGCAGCGCGACTACGTCGACA GGAAAAGCTCGAGCTTGAACTAGCGGCCGAGTGCACCTTTCGACCAGTCT TGTACACGGACGAGGCCCGACTTATGTCTGGATCAACCTTCTGGTCTTCC CCTTTGGCTTCCCCCTGCTCCTCGCCCTTGCGGCGCCCCGGTCAAGAAAA GCCTTTGCACCAGCGATTAGGAGACGTGCAACGTGCTCGGCGTGATAATC TTAATCGGTTGCGGGCCCGAGAAGAGAAGAAGGAAGCAGCAGAGTGGACT TTTAGCCCTCGCCTTTGTAGCGTGTCAGAGGAGATTGCCCGGCAACGGCG CCAGGAGCAGGACTATCAAAAAATGTACGACCAGCGTATCAACGATGAGA AGGATCAGCCACAATCTGTCAAGAGCGGAGCGAAATTTGATTACTTGGCC TATGAGTCGCAACGGTTCTTGCAGCGGCGCATTGCCAAGCAGTTAGACTT GGAGCAGGAGCAATTGGCGGAATGTCATTTTTCCCCACGCCTATGTGAGA AAACCGAAAAGCTGATTGCGCACGCAGGCTTACCACTGGATTTTGAGTCG CGCCAGTACGTGTGGAAAGAGCAAAGGCAACGCAAGGCTGCTGTAATTGA AGCAAACAAAGCTGCAGAGGAAGATGAATGGTTCAGACCGGCCCTCAAGC CCTACAGCGAAGCTATCGTGGCCCGCCTCCGACTGCGCCTAGACCAAGAG GACATCAACAGGAGGCACACCGATAGCAACAGCAACAGCGACGACGACCC TGTCGTACAGCGGCTGGCAGTCAAGGAGATCGCCAGGCGGGAGGCCGCCC GCCTGCATCGGACCGAGGCCTTTTATGCCCAGTATCTCTTCCAGCCTTCC CTCAACCCCGTCTCTCGTGCCTTGGGCCGACCCTCTACCACAGACGAGCT TGCATACAACTGGCGCGGGGAGATGGCCCGGAACAAGGCTTTTGAAGAAG CGCAGGAACGGTTTGAGGCCGAGTGCACATTTCAACCAGTACTTCAGTCC TCCTATTCTTCTTCGTCTCTTCCCCTTGCTGCCTCCGCCCCTACAGTCCC AGTAGCAGCAACGTCAAAAGCAATAGCAACTAGGTGCCGCCAATCTCTCA GTACTAGTGCTTTGGTCGCTATCGGCAACGTTTCGGTGCCTGCAACAACA AAAATACAGCTTAGGCAACCGTCGTCGCTCTCCATCGCCGGCGATTGGGA AGTCCGGCGACGGGACAAGGAATCGCTTGCGGCTAAGGCTCATGCGGCTC GTGAAGCGGAAGAGCTGCAGGATTGCACGTGGCAGCCGGAACTTGCCACA AAGGCCATACCCACTAGGCGTCGGCAAAAGCAGCAGCAATCCCCGGTCCT GGTGCGGGGTCTCGGGAAGTTCATAGCTCGCACGCAAGCAGCTGCACAGC AGCGGGAGGAGCGGGCTATCGCGACCGCTGCACTGGCTGCTGGGGGAACC AAGAGGACCGGCGTGACTACTAATTCGGGTGCTGAGCAGGTCAAGACCAC CATGGCGCGGCCTTTTCAAATTAGCTCTCGTCCACAAGGTCAACGTGGTA GCCGAGCAAGCGTGAGAGCCGAGGTGGAGAAACTTGCGCAGGCCACCTTG ACTTTTCGACCAAAGACCATTGAGCGACGGAAGCGTGCAGCGCTACAAAA TATGCTTGAGGGAGGAGTGTCAACATATGTATAAAACGATGAAGAAAACC TAATCAATA back to topprotein sequence of NO04G03020.1 >NO04G03020.1-protein ID=NO04G03020.1-protein|Name=NO04G03020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=835bp MRVTFVNASQKYSSLLHTTQHHKLVPMATSGLAELDRIDMPLQKTELHLS NPSQVPSSRSLLLSLSRPSGASSRLSPPPLHSPPASQIGSVEEVPAARVD AAIYSRLQPRHLPSSPTLAAARSTPRPLPSSFMPSSTPPPTPLSEQSPSM ARSVSQLVHSTTSVRGPSSSSSPCPAPPTSQPCIRFTKPTVSQTLLRLAQ PRNKIYAERERQREEREIAKTIQENCTFKPNLCQGTEKRAAAAAAASKGE VPKSLPDRLKEKQEAAEAARLRRQEKLELELAAECTFRPVLYTDEARLMS GSTFWSSPLASPCSSPLRRPGQEKPLHQRLGDVQRARRDNLNRLRAREEK KEAAEWTFSPRLCSVSEEIARQRRQEQDYQKMYDQRINDEKDQPQSVKSG AKFDYLAYESQRFLQRRIAKQLDLEQEQLAECHFSPRLCEKTEKLIAHAG LPLDFESRQYVWKEQRQRKAAVIEANKAAEEDEWFRPALKPYSEAIVARL RLRLDQEDINRRHTDSNSNSDDDPVVQRLAVKEIARREAARLHRTEAFYA QYLFQPSLNPVSRALGRPSTTDELAYNWRGEMARNKAFEEAQERFEAECT FQPVLQSSYSSSSLPLAASAPTVPVAATSKAIATRCRQSLSTSALVAIGN VSVPATTKIQLRQPSSLSIAGDWEVRRRDKESLAAKAHAAREAEELQDCT WQPELATKAIPTRRRQKQQQSPVLVRGLGKFIARTQAAAQQREERAIATA ALAAGGTKRTGVTTNSGAEQVKTTMARPFQISSRPQGQRGSRASVRAEVE KLAQATLTFRPKTIERRKRAALQNMLEGGVSTYV* back to topmRNA from alignment at chr4:808618..811176+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G03020.1 ID=NO04G03020.1|Name=NO04G03020.1|organism=Nannochloropsis oceanica|type=mRNA|length=2559bp|location=Sequence derived from alignment at chr4:808618..811176+ (Nannochloropsis oceanica) TCAAGCGATGACGCCCAAGCAGGTCGGCAATGAGAGTCACTTTTGTCAAC
GCAAGCCAAAAATACTCATCACTCCTGCACACCACTCAGCACCACAAGCT
CGTTCCCATGGCCACTTCGGGCCTGGCCGAGCTGGACCGCATTGACATGC
CGCTTCAAAAAACAGAACTTCACTTGTCCAACCCAAGCCAAGTGCCGAGC
AGCCGAAGCCTGCTATTATCACTATCAAGACCTTCTGGTGCCTCTTCCCG
CCTCTCTCCACCGCCGCTGCACAGCCCCCCGGCCTCGCAAATAGGGTCTG
TAGAAGAAGTGCCAGCAGCTCGCGTGGATGCCGCCATTTATTCCCGACTG
CAACCGCGACATCTTCCCTCTTCCCCGACGCTAGCAGCAGCACGCTCGAC
CCCCCGCCCGCTCCCCTCTTCTTTCATGCCAAGCTCTACACCACCCCCGA
CACCACTGTCAGAGCAATCACCATCTATGGCACGCTCAGTCTCACAATTG
GTACACTCAACCACCTCCGTCCGCGGCCCTTCCTCATCATCGTCACCATG
CCCTGCCCCCCCGACGTCCCAGCCGTGCATTCGCTTTACCAAGCCCACCG
TGTCGCAGACGCTCTTGCGGCTCGCACAACCCCGGAACAAAATTTATGCT
GAGCGAGAGCGACAACGCGAGGAACGAGAAATAGCCAAGACGATACAAGA
AAATTGTACATTCAAGCCCAACCTTTGTCAAGGCACGGAGAAGCGCGCCG
CCGCTGCTGCCGCCGCCTCCAAGGGCGAGGTGCCCAAGTCCTTGCCAGAC
CGTCTAAAAGAGAAGCAAGAAGCGGCCGAGGCAGCGCGACTACGTCGACA
GGAAAAGCTCGAGCTTGAACTAGCGGCCGAGTGCACCTTTCGACCAGTCT
TGTACACGGACGAGGCCCGACTTATGTCTGGATCAACCTTCTGGTCTTCC
CCTTTGGCTTCCCCCTGCTCCTCGCCCTTGCGGCGCCCCGGTCAAGAAAA
GCCTTTGCACCAGCGATTAGGAGACGTGCAACGTGCTCGGCGTGATAATC
TTAATCGGTTGCGGGCCCGAGAAGAGAAGAAGGAAGCAGCAGAGTGGACT
TTTAGCCCTCGCCTTTGTAGCGTGTCAGAGGAGATTGCCCGGCAACGGCG
CCAGGAGCAGGACTATCAAAAAATGTACGACCAGCGTATCAACGATGAGA
AGGATCAGCCACAATCTGTCAAGAGCGGAGCGAAATTTGATTACTTGGCC
TATGAGTCGCAACGGTTCTTGCAGCGGCGCATTGCCAAGCAGTTAGACTT
GGAGCAGGAGCAATTGGCGGAATGTCATTTTTCCCCACGCCTATGTGAGA
AAACCGAAAAGCTGATTGCGCACGCAGGCTTACCACTGGATTTTGAGTCG
CGCCAGTACGTGTGGAAAGAGCAAAGGCAACGCAAGGCTGCTGTAATTGA
AGCAAACAAAGCTGCAGAGGAAGATGAATGGTTCAGACCGGCCCTCAAGC
CCTACAGCGAAGCTATCGTGGCCCGCCTCCGACTGCGCCTAGACCAAGAG
GACATCAACAGGAGGCACACCGATAGCAACAGCAACAGCGACGACGACCC
TGTCGTACAGCGGCTGGCAGTCAAGGAGATCGCCAGGCGGGAGGCCGCCC
GCCTGCATCGGACCGAGGCCTTTTATGCCCAGTATCTCTTCCAGCCTTCC
CTCAACCCCGTCTCTCGTGCCTTGGGCCGACCCTCTACCACAGACGAGCT
TGCATACAACTGGCGCGGGGAGATGGCCCGGAACAAGGCTTTTGAAGAAG
CGCAGGAACGGTTTGAGGCCGAGTGCACATTTCAACCAGTACTTCAGTCC
TCCTATTCTTCTTCGTCTCTTCCCCTTGCTGCCTCCGCCCCTACAGTCCC
AGTAGCAGCAACGTCAAAAGCAATAGCAACTAGGTGCCGCCAATCTCTCA
GTACTAGTGCTTTGGTCGCTATCGGCAACGTTTCGGTGCCTGCAACAACA
AAAATACAGCTTAGGCAACCGTCGTCGCTCTCCATCGCCGGCGATTGGGA
AGTCCGGCGACGGGACAAGGAATCGCTTGCGGCTAAGGCTCATGCGGCTC
GTGAAGCGGAAGAGCTGCAGGATTGCACGTGGCAGCCGGAACTTGCCACA
AAGGCCATACCCACTAGGCGTCGGCAAAAGCAGCAGCAATCCCCGGTCCT
GGTGCGGGGTCTCGGGAAGTTCATAGCTCGCACGCAAGCAGCTGCACAGC
AGCGGGAGGAGCGGGCTATCGCGACCGCTGCACTGGCTGCTGGGGGAACC
AAGAGGACCGGCGTGACTACTAATTCGGGTGCTGAGCAGGTCAAGACCAC
CATGGCGCGGCCTTTTCAAATTAGCTCTCGTCCACAAGGTCAACGTGGTA
GCCGAGCAAGCGTGAGAGCCGAGGTGGAGAAACTTGCGCAGGCCACCTTG
ACTTTTCGACCAAAGACCATTGAGCGACGGAAGCGTGCAGCGCTACAAAA
TATGCTTGAGGGAGGAGTGTCAACATATGTATAAAACGATGAAGAAAACC
TAATCAATA back to topCoding sequence (CDS) from alignment at chr4:808618..811176+ >NO04G03020.1 ID=NO04G03020.1|Name=NO04G03020.1|organism=Nannochloropsis oceanica|type=CDS|length=2505bp|location=Sequence derived from alignment at chr4:808618..811176+ (Nannochloropsis oceanica) ATGAGAGTCACTTTTGTCAACGCAAGCCAAAAATACTCATCACTCCTGCA CACCACTCAGCACCACAAGCTCGTTCCCATGGCCACTTCGGGCCTGGCCG AGCTGGACCGCATTGACATGCCGCTTCAAAAAACAGAACTTCACTTGTCC AACCCAAGCCAAGTGCCGAGCAGCCGAAGCCTGCTATTATCACTATCAAG ACCTTCTGGTGCCTCTTCCCGCCTCTCTCCACCGCCGCTGCACAGCCCCC CGGCCTCGCAAATAGGGTCTGTAGAAGAAGTGCCAGCAGCTCGCGTGGAT GCCGCCATTTATTCCCGACTGCAACCGCGACATCTTCCCTCTTCCCCGAC GCTAGCAGCAGCACGCTCGACCCCCCGCCCGCTCCCCTCTTCTTTCATGC CAAGCTCTACACCACCCCCGACACCACTGTCAGAGCAATCACCATCTATG GCACGCTCAGTCTCACAATTGGTACACTCAACCACCTCCGTCCGCGGCCC TTCCTCATCATCGTCACCATGCCCTGCCCCCCCGACGTCCCAGCCGTGCA TTCGCTTTACCAAGCCCACCGTGTCGCAGACGCTCTTGCGGCTCGCACAA CCCCGGAACAAAATTTATGCTGAGCGAGAGCGACAACGCGAGGAACGAGA AATAGCCAAGACGATACAAGAAAATTGTACATTCAAGCCCAACCTTTGTC AAGGCACGGAGAAGCGCGCCGCCGCTGCTGCCGCCGCCTCCAAGGGCGAG GTGCCCAAGTCCTTGCCAGACCGTCTAAAAGAGAAGCAAGAAGCGGCCGA GGCAGCGCGACTACGTCGACAGGAAAAGCTCGAGCTTGAACTAGCGGCCG AGTGCACCTTTCGACCAGTCTTGTACACGGACGAGGCCCGACTTATGTCT GGATCAACCTTCTGGTCTTCCCCTTTGGCTTCCCCCTGCTCCTCGCCCTT GCGGCGCCCCGGTCAAGAAAAGCCTTTGCACCAGCGATTAGGAGACGTGC AACGTGCTCGGCGTGATAATCTTAATCGGTTGCGGGCCCGAGAAGAGAAG AAGGAAGCAGCAGAGTGGACTTTTAGCCCTCGCCTTTGTAGCGTGTCAGA GGAGATTGCCCGGCAACGGCGCCAGGAGCAGGACTATCAAAAAATGTACG ACCAGCGTATCAACGATGAGAAGGATCAGCCACAATCTGTCAAGAGCGGA GCGAAATTTGATTACTTGGCCTATGAGTCGCAACGGTTCTTGCAGCGGCG CATTGCCAAGCAGTTAGACTTGGAGCAGGAGCAATTGGCGGAATGTCATT TTTCCCCACGCCTATGTGAGAAAACCGAAAAGCTGATTGCGCACGCAGGC TTACCACTGGATTTTGAGTCGCGCCAGTACGTGTGGAAAGAGCAAAGGCA ACGCAAGGCTGCTGTAATTGAAGCAAACAAAGCTGCAGAGGAAGATGAAT GGTTCAGACCGGCCCTCAAGCCCTACAGCGAAGCTATCGTGGCCCGCCTC CGACTGCGCCTAGACCAAGAGGACATCAACAGGAGGCACACCGATAGCAA CAGCAACAGCGACGACGACCCTGTCGTACAGCGGCTGGCAGTCAAGGAGA TCGCCAGGCGGGAGGCCGCCCGCCTGCATCGGACCGAGGCCTTTTATGCC CAGTATCTCTTCCAGCCTTCCCTCAACCCCGTCTCTCGTGCCTTGGGCCG ACCCTCTACCACAGACGAGCTTGCATACAACTGGCGCGGGGAGATGGCCC GGAACAAGGCTTTTGAAGAAGCGCAGGAACGGTTTGAGGCCGAGTGCACA TTTCAACCAGTACTTCAGTCCTCCTATTCTTCTTCGTCTCTTCCCCTTGC TGCCTCCGCCCCTACAGTCCCAGTAGCAGCAACGTCAAAAGCAATAGCAA CTAGGTGCCGCCAATCTCTCAGTACTAGTGCTTTGGTCGCTATCGGCAAC GTTTCGGTGCCTGCAACAACAAAAATACAGCTTAGGCAACCGTCGTCGCT CTCCATCGCCGGCGATTGGGAAGTCCGGCGACGGGACAAGGAATCGCTTG CGGCTAAGGCTCATGCGGCTCGTGAAGCGGAAGAGCTGCAGGATTGCACG TGGCAGCCGGAACTTGCCACAAAGGCCATACCCACTAGGCGTCGGCAAAA GCAGCAGCAATCCCCGGTCCTGGTGCGGGGTCTCGGGAAGTTCATAGCTC GCACGCAAGCAGCTGCACAGCAGCGGGAGGAGCGGGCTATCGCGACCGCT GCACTGGCTGCTGGGGGAACCAAGAGGACCGGCGTGACTACTAATTCGGG TGCTGAGCAGGTCAAGACCACCATGGCGCGGCCTTTTCAAATTAGCTCTC GTCCACAAGGTCAACGTGGTAGCCGAGCAAGCGTGAGAGCCGAGGTGGAG AAACTTGCGCAGGCCACCTTGACTTTTCGACCAAAGACCATTGAGCGACG GAAGCGTGCAGCGCTACAAAATATGCTTGAGGGAGGAGTGTCAACATATG TATAA back to top
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