NO04G02670.1, NO04G02670.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G02670.1
Unique NameNO04G02670.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1416
Alignment locationchr4:711512..712927 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:711512..712927 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G02670.1 vs.
Match: EWM28645.1 (4fe-4s ferredoxin iron-sulfur binding domain protein [Nannochloropsis gaditana])

HSP 1 Score: 324.7 bits (831), Expect = 4.700e-85
Identity = 169/258 (65.50%), Postives = 206/258 (79.84%), Query Frame = 0 
Query:  215 LITAHPYHVEAADVLSSLAGRVDALEIHTNVSSLSAFEGQDPFDDLCRRIQESVSTLRAISVSFPYMGEAGTTAFLQSRSELFDRYFGRDGEREGKEDEGGSGEGDLRRSKLLHIWQTDGRPMSGDIGKGTTLSAVKFGEIVLRSRALPWASPRQGGEQQHFLQLAGGTNAYTAEKLAAEGLLSPASLLGSREEGGRD---TQWVHGLAFGGFARMEVDRVMAEWGLGSESSLLEAPPQAIVAVVKAAFGVVRPVKER 470
            ++ A PY VEAADVL+SLAGR+DALEIHTN S+ SA  G+DPF+DLCRRI+   S LRA+SVSFP+MG AGT AFL+SR+ +F R FG D ER       G G+    R   LHIWQTDGRPMSGDIG+GTTLSAVKF ++VLRS+ALPWAS     E +HFLQLAGGTNAYTAEKLA EGLLSPAS++  + +  ++   + WVHGLAFGGFARMEVDR+M++WGLG E+SL+EAPP A++AV++AAFGVVRP+K+R
Sbjct:  144 VLEAVPYQVEAADVLTSLAGRIDALEIHTNASASSA--GRDPFEDLCRRIRPQASGLRAVSVSFPFMGTAGTAAFLKSRNAVFGRCFGPDDERPFTGVLAGVGDSPPPRP--LHIWQTDGRPMSGDIGRGTTLSAVKFAQVVLRSQALPWASSMVS-EDEHFLQLAGGTNAYTAEKLADEGLLSPASVVRGQSDATQEKDRSAWVHGLAFGGFARMEVDRIMSQWGLGPEASLIEAPPDALLAVLRAAFGVVRPIKKR 396
The following BLAST results are available for this feature:
BLAST of NO04G02670.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28645.14.700e-8565.504fe-4s ferredoxin iron-sulfur binding domain prote... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G02670NO04G02670Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G02670.1NO04G02670.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G02670.1.cds1NO04G02670.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G02670.1 ID=NO04G02670.1|Name=NO04G02670.1|organism=Nannochloropsis oceanica|type=mRNA|length=1416bp
ATGGCCTCTGGTAGCCATGCGTTTGTGCGCCCTCCATTACAAAAGCCCGC
TGCATGCAGACCGGCCACACCATCATCCGCGTTAGCACAAGCACCAACCG
GCAACCTTCCAATGGCCTTCCCCGTGGAGGACCAGAAAGAACTCAGGGCA
CTGTTAGAGGAAATCGTAGCGCTGATGAGCACGGATCCAAAAACGGCATT
GGCAGAGGGGCGGTGGGTCAAGCTCATTTGTGGGGCGTCGTATCAAGACC
TACCCCGCGTTCAAGCTCTCTGCCTCGCCTACACATTAGCAGGCGTGGAT
TGCATCGACTTGTCAGCCAGCAAGGCTGTCGTGACAGCCGCGGAAGAAGG
TGTGAATGTAGCCATGGCAGTAGCAAAGCAAACTTTAGGCAAGCCTTTGC
CTCGACGGCCGTGGCTTATGGTAAGTGTTAATGACCAAGAGGATCTGCAC
TTCCGCAAAGCCTCCTTCGACCCTGCTCGATGTCCCGTGGACTGTCCTCG
ACCTTGTGAAAGTATCTGCCCTACACAGGCAATCCCCCCCTTGGAAAAAT
TGACAGCACTTGCATCTGGAGTAAAGGAAGGGGTAGCGCACCAAGATAGG
TGCTATGGTTGTGGTCGTTGCTTGACTGTATGTCCCTTGGGCCTCATTAC
TGCACATCCCTACCATGTGGAAGCGGCTGATGTGCTGAGCTCTTTAGCAG
GGCGTGTAGATGCATTGGAAATTCATACGAATGTCTCTTCGTTATCGGCA
TTCGAGGGGCAGGATCCGTTCGATGATTTGTGTCGGCGCATTCAGGAATC
TGTCTCGACCCTACGTGCGATCTCGGTAAGCTTTCCCTATATGGGCGAGG
CGGGTACCACGGCATTTTTACAAAGCCGGAGCGAACTTTTTGATCGATAT
TTTGGTCGCGACGGCGAGCGGGAAGGAAAGGAAGATGAGGGGGGTAGTGG
AGAGGGAGACCTCCGAAGGTCAAAGCTGCTGCATATTTGGCAGACGGACG
GACGGCCCATGAGCGGGGACATAGGCAAAGGAACGACGCTTTCCGCTGTT
AAATTTGGAGAGATCGTTTTGCGGTCTCGGGCCCTGCCTTGGGCTAGCCC
GCGGCAAGGAGGTGAACAGCAGCATTTTTTGCAGTTGGCCGGTGGGACGA
ACGCTTATACAGCCGAAAAGCTCGCGGCAGAGGGCTTGCTTTCTCCGGCT
TCGTTGTTGGGGAGCAGGGAAGAAGGAGGAAGGGATACCCAGTGGGTGCA
TGGGTTGGCTTTTGGGGGGTTTGCGCGGATGGAGGTGGACAGAGTGATGG
CGGAGTGGGGTTTAGGCTCTGAGTCTTCATTGTTGGAGGCCCCACCACAG
GCAATTGTGGCCGTAGTCAAGGCCGCCTTTGGAGTCGTCCGCCCCGTGAA
GGAACGGATAAAATAG
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protein sequence of NO04G02670.1

>NO04G02670.1-protein ID=NO04G02670.1-protein|Name=NO04G02670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=472bp
MASGSHAFVRPPLQKPAACRPATPSSALAQAPTGNLPMAFPVEDQKELRA
LLEEIVALMSTDPKTALAEGRWVKLICGASYQDLPRVQALCLAYTLAGVD
CIDLSASKAVVTAAEEGVNVAMAVAKQTLGKPLPRRPWLMVSVNDQEDLH
FRKASFDPARCPVDCPRPCESICPTQAIPPLEKLTALASGVKEGVAHQDR
CYGCGRCLTVCPLGLITAHPYHVEAADVLSSLAGRVDALEIHTNVSSLSA
FEGQDPFDDLCRRIQESVSTLRAISVSFPYMGEAGTTAFLQSRSELFDRY
FGRDGEREGKEDEGGSGEGDLRRSKLLHIWQTDGRPMSGDIGKGTTLSAV
KFGEIVLRSRALPWASPRQGGEQQHFLQLAGGTNAYTAEKLAAEGLLSPA
SLLGSREEGGRDTQWVHGLAFGGFARMEVDRVMAEWGLGSESSLLEAPPQ
AIVAVVKAAFGVVRPVKERIK*
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mRNA from alignment at chr4:711512..712927+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G02670.1 ID=NO04G02670.1|Name=NO04G02670.1|organism=Nannochloropsis oceanica|type=mRNA|length=1416bp|location=Sequence derived from alignment at chr4:711512..712927+ (Nannochloropsis oceanica)
ATGGCCTCTGGTAGCCATGCGTTTGTGCGCCCTCCATTACAAAAGCCCGC
TGCATGCAGACCGGCCACACCATCATCCGCGTTAGCACAAGCACCAACCG
GCAACCTTCCAATGGCCTTCCCCGTGGAGGACCAGAAAGAACTCAGGGCA
CTGTTAGAGGAAATCGTAGCGCTGATGAGCACGGATCCAAAAACGGCATT
GGCAGAGGGGCGGTGGGTCAAGCTCATTTGTGGGGCGTCGTATCAAGACC
TACCCCGCGTTCAAGCTCTCTGCCTCGCCTACACATTAGCAGGCGTGGAT
TGCATCGACTTGTCAGCCAGCAAGGCTGTCGTGACAGCCGCGGAAGAAGG
TGTGAATGTAGCCATGGCAGTAGCAAAGCAAACTTTAGGCAAGCCTTTGC
CTCGACGGCCGTGGCTTATGGTAAGTGTTAATGACCAAGAGGATCTGCAC
TTCCGCAAAGCCTCCTTCGACCCTGCTCGATGTCCCGTGGACTGTCCTCG
ACCTTGTGAAAGTATCTGCCCTACACAGGCAATCCCCCCCTTGGAAAAAT
TGACAGCACTTGCATCTGGAGTAAAGGAAGGGGTAGCGCACCAAGATAGG
TGCTATGGTTGTGGTCGTTGCTTGACTGTATGTCCCTTGGGCCTCATTAC
TGCACATCCCTACCATGTGGAAGCGGCTGATGTGCTGAGCTCTTTAGCAG
GGCGTGTAGATGCATTGGAAATTCATACGAATGTCTCTTCGTTATCGGCA
TTCGAGGGGCAGGATCCGTTCGATGATTTGTGTCGGCGCATTCAGGAATC
TGTCTCGACCCTACGTGCGATCTCGGTAAGCTTTCCCTATATGGGCGAGG
CGGGTACCACGGCATTTTTACAAAGCCGGAGCGAACTTTTTGATCGATAT
TTTGGTCGCGACGGCGAGCGGGAAGGAAAGGAAGATGAGGGGGGTAGTGG
AGAGGGAGACCTCCGAAGGTCAAAGCTGCTGCATATTTGGCAGACGGACG
GACGGCCCATGAGCGGGGACATAGGCAAAGGAACGACGCTTTCCGCTGTT
AAATTTGGAGAGATCGTTTTGCGGTCTCGGGCCCTGCCTTGGGCTAGCCC
GCGGCAAGGAGGTGAACAGCAGCATTTTTTGCAGTTGGCCGGTGGGACGA
ACGCTTATACAGCCGAAAAGCTCGCGGCAGAGGGCTTGCTTTCTCCGGCT
TCGTTGTTGGGGAGCAGGGAAGAAGGAGGAAGGGATACCCAGTGGGTGCA
TGGGTTGGCTTTTGGGGGGTTTGCGCGGATGGAGGTGGACAGAGTGATGG
CGGAGTGGGGTTTAGGCTCTGAGTCTTCATTGTTGGAGGCCCCACCACAG
GCAATTGTGGCCGTAGTCAAGGCCGCCTTTGGAGTCGTCCGCCCCGTGAA
GGAACGGATAAAATAG
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Coding sequence (CDS) from alignment at chr4:711512..712927+

>NO04G02670.1 ID=NO04G02670.1|Name=NO04G02670.1|organism=Nannochloropsis oceanica|type=CDS|length=1416bp|location=Sequence derived from alignment at chr4:711512..712927+ (Nannochloropsis oceanica)
ATGGCCTCTGGTAGCCATGCGTTTGTGCGCCCTCCATTACAAAAGCCCGC
TGCATGCAGACCGGCCACACCATCATCCGCGTTAGCACAAGCACCAACCG
GCAACCTTCCAATGGCCTTCCCCGTGGAGGACCAGAAAGAACTCAGGGCA
CTGTTAGAGGAAATCGTAGCGCTGATGAGCACGGATCCAAAAACGGCATT
GGCAGAGGGGCGGTGGGTCAAGCTCATTTGTGGGGCGTCGTATCAAGACC
TACCCCGCGTTCAAGCTCTCTGCCTCGCCTACACATTAGCAGGCGTGGAT
TGCATCGACTTGTCAGCCAGCAAGGCTGTCGTGACAGCCGCGGAAGAAGG
TGTGAATGTAGCCATGGCAGTAGCAAAGCAAACTTTAGGCAAGCCTTTGC
CTCGACGGCCGTGGCTTATGGTAAGTGTTAATGACCAAGAGGATCTGCAC
TTCCGCAAAGCCTCCTTCGACCCTGCTCGATGTCCCGTGGACTGTCCTCG
ACCTTGTGAAAGTATCTGCCCTACACAGGCAATCCCCCCCTTGGAAAAAT
TGACAGCACTTGCATCTGGAGTAAAGGAAGGGGTAGCGCACCAAGATAGG
TGCTATGGTTGTGGTCGTTGCTTGACTGTATGTCCCTTGGGCCTCATTAC
TGCACATCCCTACCATGTGGAAGCGGCTGATGTGCTGAGCTCTTTAGCAG
GGCGTGTAGATGCATTGGAAATTCATACGAATGTCTCTTCGTTATCGGCA
TTCGAGGGGCAGGATCCGTTCGATGATTTGTGTCGGCGCATTCAGGAATC
TGTCTCGACCCTACGTGCGATCTCGGTAAGCTTTCCCTATATGGGCGAGG
CGGGTACCACGGCATTTTTACAAAGCCGGAGCGAACTTTTTGATCGATAT
TTTGGTCGCGACGGCGAGCGGGAAGGAAAGGAAGATGAGGGGGGTAGTGG
AGAGGGAGACCTCCGAAGGTCAAAGCTGCTGCATATTTGGCAGACGGACG
GACGGCCCATGAGCGGGGACATAGGCAAAGGAACGACGCTTTCCGCTGTT
AAATTTGGAGAGATCGTTTTGCGGTCTCGGGCCCTGCCTTGGGCTAGCCC
GCGGCAAGGAGGTGAACAGCAGCATTTTTTGCAGTTGGCCGGTGGGACGA
ACGCTTATACAGCCGAAAAGCTCGCGGCAGAGGGCTTGCTTTCTCCGGCT
TCGTTGTTGGGGAGCAGGGAAGAAGGAGGAAGGGATACCCAGTGGGTGCA
TGGGTTGGCTTTTGGGGGGTTTGCGCGGATGGAGGTGGACAGAGTGATGG
CGGAGTGGGGTTTAGGCTCTGAGTCTTCATTGTTGGAGGCCCCACCACAG
GCAATTGTGGCCGTAGTCAAGGCCGCCTTTGGAGTCGTCCGCCCCGTGAA
GGAACGGATAAAATAG
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Synonyms
Publications