NO04G02540.1, NO04G02540.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G02540.1
Unique NameNO04G02540.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length736
Alignment locationchr4:677273..678842 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:677273..678842 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G02540.1 vs.
Match: EWM28633.1 (pseudouridine synthase and archaeosine transglycosylase domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 288.5 bits (737), Expect = 1.400e-74
Identity = 139/175 (79.43%), Postives = 157/175 (89.71%), Query Frame = 0 
Query:    1 MFKRFNKEDFSSNGQVKSSVRRGIRCEILEQYPRLESVMGDIFPQKASVEVIKIPGHVQVVVLEGEPIFFSLRDGQYFPTLRVLHQYPGFMSEVQVDKGAIRFVLGGANIMCPGLTSKGGKMEDELPEGTAVAIRAEGKEMELALGLTKMSTTDIREKNKGIAIELIHYVNDGLW 176
            MFKRFN++DFSSNGQVKSSV+RGIR  ILEQYPRLESVM DIFP+KA+V V+K PGHVQVVVL  EP+FFSLRDG +FPTLR+LHQYPGFM EVQVDKGAIRF+LGGA+IMCPGLTSKGG ME++LP    VAIRAEGKEM LALGLTKMS  +IR +NKGIAIEL+H++NDGLW
Sbjct:   52 MFKRFNEDDFSSNGQVKSSVQRGIRNSILEQYPRLESVMEDIFPKKANVVVVKCPGHVQVVVLNKEPLFFSLRDGHFFPTLRLLHQYPGFMREVQVDKGAIRFILGGAHIMCPGLTSKGGDMEEDLPAEQPVAIRAEGKEMVLALGLTKMSAAEIRGQNKGIAIELVHFLNDGLW 226
The following BLAST results are available for this feature:
BLAST of NO04G02540.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28633.11.400e-7479.43pseudouridine synthase and archaeosine transglycos... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G02540NO04G02540Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G02540.1NO04G02540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G02540.1.cds1NO04G02540.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G02540.1.cds2NO04G02540.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G02540.1.cds3NO04G02540.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G02540.1.cds4NO04G02540.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G02540.1.cds5NO04G02540.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G02540.1.cds6NO04G02540.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G02540.1.cds7NO04G02540.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G02540.1 ID=NO04G02540.1|Name=NO04G02540.1|organism=Nannochloropsis oceanica|type=mRNA|length=736bp
CAGGTCTCACGCACCACCGCCAGGGCTATATTTGATCCCGAAGACTCTTC
CGTCGCCTCGGTCATCGACAATCGACGGCGAGCATCAGCCGTGCCCAGAA
AGCCTCCTTTCACCCCCTTCAGCTAGCTAGTTAGCAGCAGTATGTTCAAA
AGGTTTAACAAAGAGGATTTCTCGTCCAATGGCCAAGTCAAGTCCAGCGT
ACGGCGTGGCATCCGCTGCGAGATTTTGGAGCAATATCCGCGGTTGGAAA
GCGTGATGGGGGACATTTTTCCCCAGAAGGCCTCTGTGGAGGTCATCAAA
ATTCCGGGTCACGTGCAAGTGGTGGTTCTCGAAGGTGAGCCCATTTTTTT
CAGCCTCCGGGACGGGCAGTACTTCCCCACCCTTCGCGTTCTCCATCAAT
ATCCCGGCTTCATGTCTGAAGTACAAGTAGACAAGGGCGCCATCCGCTTT
GTCTTGGGTGGGGCCAATATTATGTGTCCGGGCCTTACCTCCAAAGGAGG
TAAAATGGAAGACGAGTTGCCGGAAGGAACGGCGGTGGCGATTCGCGCGG
AGGGGAAGGAAATGGAGCTGGCCTTGGGGTTAACGAAAATGTCAACGACT
GACATACGGGAAAAGAACAAAGGCATAGCCATCGAGCTCATCCATTATGT
GAACGACGGCTTGTGGAGAACGGAGTTTATCGACTAAAGCAAAGTAGAGA
CTCAAAAGAAGAACAATCAAAACAATGACAAACTTA
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protein sequence of NO04G02540.1

>NO04G02540.1-protein ID=NO04G02540.1-protein|Name=NO04G02540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=182bp
MFKRFNKEDFSSNGQVKSSVRRGIRCEILEQYPRLESVMGDIFPQKASVE
VIKIPGHVQVVVLEGEPIFFSLRDGQYFPTLRVLHQYPGFMSEVQVDKGA
IRFVLGGANIMCPGLTSKGGKMEDELPEGTAVAIRAEGKEMELALGLTKM
STTDIREKNKGIAIELIHYVNDGLWRTEFID*
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mRNA from alignment at chr4:677273..678842+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G02540.1 ID=NO04G02540.1|Name=NO04G02540.1|organism=Nannochloropsis oceanica|type=mRNA|length=1570bp|location=Sequence derived from alignment at chr4:677273..678842+ (Nannochloropsis oceanica)
CAGGTCTCACGCACCACCGCCAGGGCTATATTTGATCCCGAAGACTCTTC
CGTCGCCTCGGTCATCGACAATCGACGGCGAGCATCAGCCGTGCCCAGAA
AGCCTCCTTTCACCCCCTTCAGCTAGCTAGTTAGCAGCAGTATGTTCAAA
AGGTATGCGTCAGTATAGTGCCGACTGGCCGTATCGCTCAGGTGGATGGG
CAAATTATCTTTCTCCCCTTTCCGCCTTGACGCTCAAAACTTCTTTCCCT
GCTCCATTCCTTGCAAGGTTTAACAAAGAGGATTTCTCGTCCAATGGCCA
AGTCAAGTCCAGCGTACGGCGTGGCATCCGCTGCGAGATTTTGGAGCAAT
ATCCGCGGTTGGAAAGCGTGATGGGGGACATTTTTCCCCAGAAGGCCTCT
GTGGAGGTCATCAAAATGTACGTATGCTTTCCAGGGCACAGATGAGAAGG
ACATGGTTGGAAGGGAAATGGACGGCTGACATGGAATAAGTGCTTTGGTT
GCTCTGTCAGTTGACTCATTATTGCTTTATGACTATTATGTCTACAGTCC
GGGTCACGTGCAAGTGGTGGTTCTCGAAGGTGAGCCCATTTTTTTCAGCC
TCCGGGACGGGCAGTACTTCCCCACCCTTCGCGTTCTCCATCAATGTACG
TTTAGTCTGCGACGCCCTCCAATTTTTTCTCTGTATGCACGCATGCTTTT
TAAATATGTAGTAAGTGTGATTTTCATTCTCCCTTGCAAATGACAGTCAT
TGGTATTTGACCCCGCGAGTGGACGCAAGCACGCATTCGCTTTATTACCA
CACACAGCATTCGCTTTATAACCACACACAATTTCGAATGATCCATTTTT
CCCCTGACTTCTTTCACGCCCTCAACAACGACTCAAACAGATCCCGGCTT
CATGTCTGAAGTACAAGTAGACAAGGGCGCCATCCGCTTTGTCTTGGGTG
GGGCCAATATTATGTGTCCGGGCCTTACCTCCAAAGGAGGTAAAATGGAA
GACGAGTTGCCGGAAGGAACGGCGGTGGTACGTTACATTGAGACAACGAG
GGAAGGAGGAAAAGGAAACAAGGACAGGAGGGGCAGATGACTCATTATTT
TTATTTCTCCACCTCTTTAATGAATGCAGGCGATTCGCGCGGAGGGGAAG
GAAATGGAGCTGGCCTTGGGGTTAACGAAAATGTCAACGACTGACATGTA
CGCATCTTTCTGTCTTGTAACTTTCAATGTCAGATGCGCTTTCTTATTGT
GTTCCCATATTCTTGATATCATTTTTAAGTGTCTTTTTGTGGTTGGACTG
CCCAAACTCACATTTTCCATATGTATCATCTACGTTTTCCATGCATACGC
AGACGGGAAAAGAACAAAGGCATAGCCATCGAGCTCATCCATTATGTGAA
CGACGGCTTGTGGAGGTATGTTTCGAAAGGAAAAATGTTTTCACACAACG
ATCTCGCCCTCACTATTTCCTCCCTTTCTCCCTCCCATACGACCTCGCAC
AGAACGGAGTTTATCGACTAAAGCAAAGTAGAGACTCAAAAGAAGAACAA
TCAAAACAATGACAAACTTA
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Coding sequence (CDS) from alignment at chr4:677273..678842+

>NO04G02540.1 ID=NO04G02540.1|Name=NO04G02540.1|organism=Nannochloropsis oceanica|type=CDS|length=546bp|location=Sequence derived from alignment at chr4:677273..678842+ (Nannochloropsis oceanica)
ATGTTCAAAAGGTTTAACAAAGAGGATTTCTCGTCCAATGGCCAAGTCAA
GTCCAGCGTACGGCGTGGCATCCGCTGCGAGATTTTGGAGCAATATCCGC
GGTTGGAAAGCGTGATGGGGGACATTTTTCCCCAGAAGGCCTCTGTGGAG
GTCATCAAAATTCCGGGTCACGTGCAAGTGGTGGTTCTCGAAGGTGAGCC
CATTTTTTTCAGCCTCCGGGACGGGCAGTACTTCCCCACCCTTCGCGTTC
TCCATCAATATCCCGGCTTCATGTCTGAAGTACAAGTAGACAAGGGCGCC
ATCCGCTTTGTCTTGGGTGGGGCCAATATTATGTGTCCGGGCCTTACCTC
CAAAGGAGGTAAAATGGAAGACGAGTTGCCGGAAGGAACGGCGGTGGCGA
TTCGCGCGGAGGGGAAGGAAATGGAGCTGGCCTTGGGGTTAACGAAAATG
TCAACGACTGACATACGGGAAAAGAACAAAGGCATAGCCATCGAGCTCAT
CCATTATGTGAACGACGGCTTGTGGAGAACGGAGTTTATCGACTAA
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Synonyms
Publications