NO30G01120.1, NO30G01120.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO30G01120.1
Unique Name	NO30G01120.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1137
Alignment location	chr30:411651..414836 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr30	genome	chr30:411651..414836 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO30G01120.1 vs.
Match: EWM20466.1 (threonine-phosphate decarboxylase [Nannochloropsis gaditana])

HSP 1 Score: 620.9 bits (1600), Expect = 2.600e-174
Identity = 293/378 (77.51%), Postives = 323/378 (85.45%), Query Frame = 0

Query:    1 MASEGMTTDNQGRWDRTTQTYHGGQDWRNIGNFIEDFSVTTNGLGTPVKALEAARKAVDEIGHYPPADFEPAISHLASFLWPGKEEGGREGGEVHKPLLLLGNGASELIDLVVRQATPGKWKPGDTATQYKEYERSAKAAGFTTTDATDPSASLLCMVNPTNPTGDYLTVEKIKAYIEANAATGTTVIVDESMQPWVGHHWRDDSLIHQRAWAKALSTDKDIHVWVMTSWTKIWSCTGVRLGSVVAPTAEALAQLKAKQVPWSVNCIALAFLSAVVQDHAYLDETWRLTPLWNRALRSELADRFPSWKVHGEIYLSWVWVDTGDAAVTTEAVKLASAVGTPVRSAGPGYNMPTFFRIAVRDAKLTNILLEAWSPLRKK 379
            MASEGMTT NQGRWDR TQTYHGGQDWRNIGNFIEDFSVTTNGLGTP  ALEAAR+AVDEI HYPPADFEPA++ LASFLWP       E G ++KPLLLLGNGASELIDLV+RQA PGKW+PG+T TQYKEYERSAKAAGFTTTDA D SASLLCMVNPTNPTGDY++VE +KAYIE  +A G+TVIVDESMQPW+G HWR DSLIHQR W   +S +K +HVWVMTSWTKIWSCTG+RLGSVVAP  EAL +LKAKQVPWSVNC+ALAFLS+VV D AYL  TW LTP WN+ALR+EL+  FPSW VHGE+YLSWVWVDT D   T EAV+LASA GTPVRSAGPGYNMPTFFRIAVRD K+T+IL+     LR+K
Sbjct:    1 MASEGMTTHNQGRWDRITQTYHGGQDWRNIGNFIEDFSVTTNGLGTPASALEAARRAVDEISHYPPADFEPALTDLASFLWP-------EEGNIYKPLLLLGNGASELIDLVIRQAKPGKWRPGNTVTQYKEYERSAKAAGFTTTDAGDASASLLCMVNPTNPTGDYMSVEAVKAYIEGTSAPGSTVIVDESMQPWIGPHWRQDSLIHQREWVARISAEKGVHVWVMTSWTKIWSCTGIRLGSVVAPNPEALLELKAKQVPWSVNCVALAFLSSVVHDEAYLASTWELTPQWNKALRAELSIHFPSWTVHGEVYLSWVWVDTHDVDTTAEAVRLASAAGTPVRSAGPGYNMPTFFRIAVRDPKVTSILIVRTEKLRRK 371

The following BLAST results are available for this feature:

BLAST of NO30G01120.1 vs.

BLAST of NO30G01120.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM20466.1	2.600e-174	77.51	threonine-phosphate decarboxylase [Nannochloropsis...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO30G01120	NO30G01120	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO30G01120.1	NO30G01120.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO30G01120.1.cds1	NO30G01120.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO30G01120.1.cds2	NO30G01120.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO30G01120.1.cds3	NO30G01120.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO30G01120.1.cds4	NO30G01120.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO30G01120.1.cds5	NO30G01120.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO30G01120.1.cds6	NO30G01120.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO30G01120.1.cds7	NO30G01120.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO30G01120.1.cds8	NO30G01120.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO30G01120.1.cds9	NO30G01120.1.cds9	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO30G01120.1.cds10	NO30G01120.1.cds10	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr30:411651..414836+
coding sequence from alignment at chr30:411651..414836+

mRNA sequence

>NO30G01120.1 ID=NO30G01120.1|Name=NO30G01120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1137bp
ATGGCGAGCGAGGGCATGACTACCGACAACCAGGGGCGGTGGGATCGCAC
TACCCAGACGTACCACGGGGGACAAGATTGGCGAAATATTGGCAATTTTA
TCGAGGATTTTTCTGTGACGACCAATGGGCTCGGCACGCCCGTCAAGGCG
CTTGAGGCCGCCAGAAAAGCGGTGGACGAGATCGGGCATTATCCTCCCGC
GGATTTCGAGCCCGCCATCTCCCACCTCGCCTCCTTTTTGTGGCCGGGGA
AGGAGGAGGGAGGGAGAGAGGGAGGGGAGGTGCATAAACCATTGCTGCTT
CTGGGAAATGGCGCGAGTGAATTGATTGATTTGGTGGTTCGGCAGGCGAC
GCCAGGGAAATGGAAGCCCGGGGACACGGCCACACAGTACAAGGAGTATG
AGCGCTCCGCCAAGGCCGCCGGCTTCACCACCACCGATGCCACAGACCCC
TCCGCTTCCTTGCTCTGCATGGTCAATCCGACCAACCCAACGGGCGACTA
CCTGACCGTTGAGAAGATCAAGGCTTATATTGAGGCTAACGCCGCGACTG
GCACCACCGTAATAGTGGACGAGAGCATGCAGCCATGGGTGGGGCATCAC
TGGAGGGACGACTCCCTCATCCACCAACGGGCATGGGCCAAGGCCCTCTC
AACGGACAAGGACATCCACGTGTGGGTAATGACCTCCTGGACCAAAATTT
GGTCATGCACTGGTGTACGGCTGGGGAGCGTCGTGGCTCCCACCGCCGAA
GCCCTCGCGCAGCTTAAAGCGAAGCAAGTCCCCTGGTCCGTCAACTGCAT
CGCCCTGGCCTTCCTCTCCGCCGTTGTCCAAGACCATGCCTACCTGGACG
AGACATGGAGACTCACGCCGTTATGGAACCGAGCATTGCGGTCCGAGCTC
GCCGACCGTTTTCCTTCCTGGAAGGTACACGGGGAGATCTACCTCTCCTG
GGTGTGGGTGGATACGGGCGATGCAGCCGTTACAACCGAAGCCGTTAAAC
TCGCCAGTGCGGTCGGCACGCCCGTTCGAAGTGCAGGCCCAGGCTACAAC
ATGCCCACCTTTTTCCGCATTGCCGTGCGTGATGCCAAGCTCACGAATAT
CCTTCTAGAAGCATGGAGCCCCCTGAGGAAGAAGTGA

protein sequence of NO30G01120.1

>NO30G01120.1-protein ID=NO30G01120.1-protein|Name=NO30G01120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=379bp
MASEGMTTDNQGRWDRTTQTYHGGQDWRNIGNFIEDFSVTTNGLGTPVKA
LEAARKAVDEIGHYPPADFEPAISHLASFLWPGKEEGGREGGEVHKPLLL
LGNGASELIDLVVRQATPGKWKPGDTATQYKEYERSAKAAGFTTTDATDP
SASLLCMVNPTNPTGDYLTVEKIKAYIEANAATGTTVIVDESMQPWVGHH
WRDDSLIHQRAWAKALSTDKDIHVWVMTSWTKIWSCTGVRLGSVVAPTAE
ALAQLKAKQVPWSVNCIALAFLSAVVQDHAYLDETWRLTPLWNRALRSEL
ADRFPSWKVHGEIYLSWVWVDTGDAAVTTEAVKLASAVGTPVRSAGPGYN
MPTFFRIAVRDAKLTNILLEAWSPLRKK*

mRNA from alignment at chr30:411651..414836+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO30G01120.1 ID=NO30G01120.1|Name=NO30G01120.1|organism=Nannochloropsis oceanica|type=mRNA|length=3186bp|location=Sequence derived from alignment at chr30:411651..414836+ (Nannochloropsis oceanica)
ATGGCGAGCGAGGGCATGACTACCGACAACCAGGGGCGGTGGGATCGGTG
AGTCAAGCCAGATAGACAGATACACGCATGCCTGTTGCGCCCTTCCCATA
CACTGTACAAGCCCTATCCCCACACTCTCTTACTCTCTCTTCTTTCTTTC
TCATGGGCATCGTTTCGGTTGTCCCTCCCTCCCTCCCTCCCTCGCTCCCT
CCCTCTTCTCGTATATAGCACTACCCAGACGTACCACGGGGGACAAGATT
GGCGAAATATTGGCAATTTTATCGAGGATTTTTCTGTGACGACCAATGGG
CTCGGCACGCCCGTCAAGGCGCTTGAGGCCGCCAGAAAAGCGGTGAGGAG
GGAGGGAAGAAGGGGGGAAAGGACGGAGGGAGATACGGGAGGAATTAGGA
GGGAAGAGAGGCACTCATGGTGATGATATGGTCAAGGATAAATGATCAAC
GATAAATGTGCTTAGCAATCTTGTAGATGCCTTCCTACGACGGGCGGCGA
GGAATGAAGTTCGAAAGGAGGGAGGGAGGGATGGAAGACACCTCCCTACC
ACACTGTGCCCTTCCCCCCGTCCTCCCTCCTTCCCTCCTTCCCTCCCTCC
CTCCCCCCATATCTCTTATTTCAATCGCATTTATCAAGCTCTTTACATAT
CATTTTTTCTATCCTTCATTTTTATTTGCTCCGCTCACCTACCCATCCCA
TCCCCTCCCCTCCAACCCTCCCTCCCTCCCTCCTTCCCTCCAACCCTCCC
ACCCTGCAGGTGGACGAGATCGGGCATTATCCTCCCGCGGATTTCGAGCC
CGCCATCTCCCACCTCGCCTCCTTTTTGTGGCCGGGGAAGGAGGAGGGAG
GGAGAGAGGGAGGGGAGGTGCATAAACCATTGCTGCTTCTGGGAAATGGC
GCGAGTGAATTGATTGATTTGGTGGTTCGGCAGGCGACGCCAGGGTGAGG
GAGGGAGGGAGAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGATGGGTGTA
AAATCGTCGTGGCATCATCATTTTCTGACGGCGTCTATGACGGTGTCTAA
AATCCGCCCTCCCTTCCTCCGTCCCTTCCTTCCTTCCTCCCTCCCTCCCT
CCCTCCGTCCCTCCCTTCCTTCTCTAGGAAATGGAAGCCCGGGGACACGG
CCACACAGTACAAGGAGTATGAGCGCTCCGCCAAGGCCGGTTAGCCGCCC
CCTCCCCCCACCCTGCCTCCTACCCTCCTCCCTCCCTCCCTCTCCCCCTC
CCTTCCTCCCTCCCTCCACTTTCTACTCATGCTCCTCAAACCTTACCCTG
ACATTCATCCCTCCCTCCCTCCTTCCCTCTCTCCCTCCCTCCCTCCCTCA
GCCGGCTTCACCACCACCGATGCCACAGACCCCTCCGCTTCCTTGCTCTG
CATGGTCAATCCGACCAACCCAACGGGCGACTACCTGACCGTTGAGAAGG
TAATTGCCCTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTACTATACTA
CCACTACCTGACCGTTGAAAAGGCGAGTGCCCTCCCTCCTTCCCGCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCTTCCCTCCCTCCCTCCCTCCGCCCC
TCTCTCCCCCCTCCCTCACCTTCCCCCCTCTTCCCACCCCCCCCCGCAGA
TCAAGGCTTATATTGAGGCTAACGCCGCGACTGGCACCACCGTAATAGTG
GACGAGAGCATGCAGCCATGGGTGGGGCATCACTGGAGGGACGACTCCCT
CATCCACCAACGGGCATGGGCCAAGGCCCTCTCAACGGACAAGGTACGTG
CCTTCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTTTCTAAACCTCCCTAGCTCGTGTTGTTTACTCTCGCTGC
ATTCGCCCTCCCCTCTCTCCCCTCCTCCCTCCCTCCCTCCCACCCATCCT
CCCACCCCCCTCCCTCCCTCCCTCCCTCGGTCCCTCCCTCGCTCCCTCCC
TCCCTCCCCTCTCCCCCCAGGACATCCACGTGTGGGTAATGACCTCCTGG
ACCAAAATTTGGTCATGCACTGGTGTACGGCTGGGGAGCGTCGTGGCTCC
CACCGCCGAAGCCCTCGCGCAGCTTAAAGCGAAGCAAGTCCCCTGGTCCG
TCAACTGCATCGCCCTGGTACGTCCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCAGGCCTTCCTCTCC
GCCGTTGTCCAAGACCATGCCTACCTGGACGAGACATGGAGACTCACGCC
GTTATGGAACCGAGCATTGCGGTCCGAGCTCGCCGACCGTTTTCCTTCCT
GGAAGGTACGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GGCCGAGGCTGCCCCGATGAGGCTTGTAGCTTGTGTGTGGTTGGAAAAAG
GAAGTTCTCTCTTTTGGCTTGACTGTTTGTGTTCTCACTCTTGCGAAAGG
CATGGATGAGTCCTTCCTCCCTCCCTCCCTCCCTCTCTCCTTCCCTCCTC
ATCACCTCCGGCCAGCGAGGCCTTCAACGCAACAACTCCCCAACTTCGCC
CGAATCCGCCACTCGACCTCCCCCTTCGCCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCTCTCTCTCTCTCCTTTCTTTAGGTACACGGGGAG
ATCTACCTCTCCTGGGTGTGGGTGGATACGGGCGATGCAGCCGTTACAAC
CGAAGCCGTTAAACTCGCCAGTGCGGTCGGCACGCCCGTTCGAAGTGCAG
GTACGCCTCTCCCTCCCTCCCTCTCACCCTCCCTCACCTTCTCGTCGTCC
CTACGGCTTCGATTCTCATCTCTGTCACACTTTCTCTCGCCCTCCCCCCT
CCCTCTCTCCTTCCCTCCCTCCCTCCCTCCCTCAGGCCCAGGCTACAACA
TGCCCACCTTTTTCCGCATTGCCGTGCGTGATGCCAAGCTCACGAATATC
CTTCTAGAAGCATGGAGCCCCCTGAGGAAGAAGTGA

Coding sequence (CDS) from alignment at chr30:411651..414836+

>NO30G01120.1 ID=NO30G01120.1|Name=NO30G01120.1|organism=Nannochloropsis oceanica|type=CDS|length=1137bp|location=Sequence derived from alignment at chr30:411651..414836+ (Nannochloropsis oceanica)
ATGGCGAGCGAGGGCATGACTACCGACAACCAGGGGCGGTGGGATCGCAC
TACCCAGACGTACCACGGGGGACAAGATTGGCGAAATATTGGCAATTTTA
TCGAGGATTTTTCTGTGACGACCAATGGGCTCGGCACGCCCGTCAAGGCG
CTTGAGGCCGCCAGAAAAGCGGTGGACGAGATCGGGCATTATCCTCCCGC
GGATTTCGAGCCCGCCATCTCCCACCTCGCCTCCTTTTTGTGGCCGGGGA
AGGAGGAGGGAGGGAGAGAGGGAGGGGAGGTGCATAAACCATTGCTGCTT
CTGGGAAATGGCGCGAGTGAATTGATTGATTTGGTGGTTCGGCAGGCGAC
GCCAGGGAAATGGAAGCCCGGGGACACGGCCACACAGTACAAGGAGTATG
AGCGCTCCGCCAAGGCCGCCGGCTTCACCACCACCGATGCCACAGACCCC
TCCGCTTCCTTGCTCTGCATGGTCAATCCGACCAACCCAACGGGCGACTA
CCTGACCGTTGAGAAGATCAAGGCTTATATTGAGGCTAACGCCGCGACTG
GCACCACCGTAATAGTGGACGAGAGCATGCAGCCATGGGTGGGGCATCAC
TGGAGGGACGACTCCCTCATCCACCAACGGGCATGGGCCAAGGCCCTCTC
AACGGACAAGGACATCCACGTGTGGGTAATGACCTCCTGGACCAAAATTT
GGTCATGCACTGGTGTACGGCTGGGGAGCGTCGTGGCTCCCACCGCCGAA
GCCCTCGCGCAGCTTAAAGCGAAGCAAGTCCCCTGGTCCGTCAACTGCAT
CGCCCTGGCCTTCCTCTCCGCCGTTGTCCAAGACCATGCCTACCTGGACG
AGACATGGAGACTCACGCCGTTATGGAACCGAGCATTGCGGTCCGAGCTC
GCCGACCGTTTTCCTTCCTGGAAGGTACACGGGGAGATCTACCTCTCCTG
GGTGTGGGTGGATACGGGCGATGCAGCCGTTACAACCGAAGCCGTTAAAC
TCGCCAGTGCGGTCGGCACGCCCGTTCGAAGTGCAGGCCCAGGCTACAAC
ATGCCCACCTTTTTCCGCATTGCCGTGCGTGATGCCAAGCTCACGAATAT
CCTTCTAGAAGCATGGAGCCCCCTGAGGAAGAAGTGA

Synonyms

Publications