NO30G01060.1, NO30G01060.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO30G01060.1
Unique NameNO30G01060.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1313
Alignment locationchr30:389392..392309 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:389392..392309 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO30G01060.1 vs.
Match: CBJ27219.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 269.6 bits (688), Expect = 1.500e-68
Identity = 146/344 (42.44%), Postives = 198/344 (57.56%), Query Frame = 0 
Query:   66 VLREIAT-KLDEAGLGKTHLVQDRSLGPGLHNQHYRFDTSDAGPVFVKI-----------NHRFGFIQNFQSEFESLRVLAATDTLRVPRPYMSGLLQDGHSFLAMEYMEPVPFGPSIKSVATDLGDSLARLHMAPLPFMGEHYGFQNNNYLGMTEQANEWGEDFCSFFIHKRLAPQLRIAGQKGKGGGKELEGVFGGRN--VERL----LFKVEKILEPVRHVRPSLLHGDLWQGNSGATKMGFGREGGKERKAFAHDPACWYGHAEFDLALSGMFGGFLPEFYQAYHALLPLQDGFEERQEVYRLYHYVHHMNNFGAGWGTAGSVADPKGYYERCLALMKSI 392
            VLR++   K++E G GK   VQ+ + GPGLHN+H+++ T+  G    KI           + R   + NF +E   L  +  T  LR P+P   G L  G SFL ME+M  +PFG SI  V  +L + LA +H+   P     +GF  +N+LG T Q N W  DF +FF+ +RL+PQ   A  K        +  +G +N   ER+    +   +K+LEPV + +P+LLHGDLW GN G          G+ R+A   DPA WYG  EFDLAL+ MFGGF   FY+ YHA++P   GFE R  VY+LYHY++H+N  GAG+G  G+V DPKGYYER L LM+ I
Sbjct:   84 VLRDVVIEKIEELGGGKVQQVQETTAGPGLHNRHFKY-TATGGTFMAKIAKASRSSPPTNDWREASLDNFFAEQTGLEAILETGCLRAPKPLALGTLPLGGSFLLMEHMPFIPFGQSIPEVLRNLAEGLAAMHLQDPPPSCGGFGFVGDNFLGGTRQVNTWDSDFSNFFVERRLSPQFAQARTK-------FQDSWGTKNEDFERIGREAILTAKKVLEPVANSKPALLHGDLWVGNCGGVP-----GEGRLREAAVFDPAVWYGLPEFDLALATMFGGFGKPFYETYHAIIPKAPGFERRMRVYKLYHYLNHLNLHGAGFGHGGTVEDPKGYYERSLTLMQEI 414
The following BLAST results are available for this feature:
BLAST of NO30G01060.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
1002003004005006007008009001000110012001300Expect = 1.50e-68 / Id = 42.44SequenceCBJ27219.1
Match NameE-valueIdentityDescription
CBJ27219.11.500e-6842.44conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO30G01060NO30G01060Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO30G01060.1NO30G01060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO30G01060.1.cds1NO30G01060.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G01060.1.cds2NO30G01060.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G01060.1.cds3NO30G01060.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G01060.1.cds4NO30G01060.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G01060.1.cds5NO30G01060.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G01060.1.cds6NO30G01060.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G01060.1.cds7NO30G01060.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G01060.1.cds8NO30G01060.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G01060.1.cds9NO30G01060.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO30G01060.1 ID=NO30G01060.1|Name=NO30G01060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1313bp
CAACAGGCACACCATGCAACCACCACCACGTCTCTTTGCTCTTTTGCTTA
TTCCCCTCCTCCTAGCTCTCTTTATCTCTCCCTGGGTCGTCATCGTCGAT
GCCTTTGTCTCCCTCCCGTCCTCCTCCGGCTCGCCCTCGTCCTCCTGCCT
GCCTCTCTACGCACGCCCCATCCTTTCCTCAGCCGAGCGCCTTACACTAA
ACGAACCCGTGCTGAGAGAAATCGCCACGAAATTAGACGAAGCTGGGCTA
GGCAAAACACACCTCGTGCAAGACAGAAGCCTTGGGCCTGGGTTACACAA
TCAGCATTACCGCTTTGACACGTCGGATGCCGGTCCAGTCTTCGTCAAAA
TCAACCATCGCTTCGGGTTCATCCAAAATTTCCAATCGGAATTCGAAAGT
CTGCGTGTACTAGCGGCCACTGATACTCTCAGGGTCCCTCGTCCCTATAT
GAGTGGGCTTCTCCAAGACGGTCATTCATTCCTGGCTATGGAGTACATGG
AGCCCGTACCCTTTGGTCCCTCCATCAAGAGTGTCGCCACCGACCTAGGC
GACAGCCTAGCACGTCTTCATATGGCTCCCTTGCCCTTTATGGGAGAGCA
TTACGGCTTCCAAAACAACAACTACCTCGGCATGACCGAGCAGGCGAACG
AGTGGGGGGAGGACTTCTGTTCGTTCTTTATCCATAAACGACTCGCGCCT
CAACTCCGAATAGCGGGGCAAAAAGGGAAGGGGGGAGGGAAGGAGTTGGA
GGGGGTCTTTGGAGGAAGAAATGTGGAGAGGCTGCTGTTCAAGGTCGAAA
AGATTTTAGAACCAGTCCGTCACGTTCGACCCTCTCTGCTCCATGGAGAC
CTATGGCAAGGCAACAGCGGTGCCACCAAAATGGGGTTCGGAAGGGAGGG
AGGGAAGGAACGCAAGGCCTTTGCGCATGATCCGGCGTGTTGGTATGGAC
ATGCCGAGTTTGATCTTGCCCTCAGTGGCATGTTCGGAGGCTTCCTCCCC
GAGTTTTATCAGGCCTACCATGCCCTCCTTCCTCTCCAGGATGGGTTCGA
GGAACGACAGGAAGTCTACAGACTCTATCACTACGTTCATCACATGAACA
ACTTTGGTGCAGGGTGGGGCACGGCAGGCTCAGTCGCGGACCCTAAAGGT
TACTACGAACGGTGTCTAGCGTTGATGAAGAGCATTAATTCAAGATGAGG
GAGGGAGGGAGGGAGGGAGGGATGGAAGACTCTGAGTATTGGTGTAGAGC
GTGTATTGCTGATGAAGAGAATTAGCTCGAAATGAGGGAGGGAGGGGGAA
GAGAGGGAAGGGG
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protein sequence of NO30G01060.1

>NO30G01060.1-protein ID=NO30G01060.1-protein|Name=NO30G01060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=395bp
MQPPPRLFALLLIPLLLALFISPWVVIVDAFVSLPSSSGSPSSSCLPLYA
RPILSSAERLTLNEPVLREIATKLDEAGLGKTHLVQDRSLGPGLHNQHYR
FDTSDAGPVFVKINHRFGFIQNFQSEFESLRVLAATDTLRVPRPYMSGLL
QDGHSFLAMEYMEPVPFGPSIKSVATDLGDSLARLHMAPLPFMGEHYGFQ
NNNYLGMTEQANEWGEDFCSFFIHKRLAPQLRIAGQKGKGGGKELEGVFG
GRNVERLLFKVEKILEPVRHVRPSLLHGDLWQGNSGATKMGFGREGGKER
KAFAHDPACWYGHAEFDLALSGMFGGFLPEFYQAYHALLPLQDGFEERQE
VYRLYHYVHHMNNFGAGWGTAGSVADPKGYYERCLALMKSINSR*
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mRNA from alignment at chr30:389392..392309-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO30G01060.1 ID=NO30G01060.1|Name=NO30G01060.1|organism=Nannochloropsis oceanica|type=mRNA|length=2918bp|location=Sequence derived from alignment at chr30:389392..392309- (Nannochloropsis oceanica)
CAACAGGCACACCATGCAACCACCACCACGTCTCTTTGCTCTTTTGCTTA
TTCCCCTCCTCCTAGCTCTCTTTATCTCTCCCTGGGTCGTCATCGTCGAT
GCCTTTGTCTCCCTCCCGTCCTCCTCCGGCTCGCCCTCGTCCTCCTGCCT
GCCTCTCTACGCACGCCCCATCCTTTCCTCAGCCGAGCGCCTTACACTAA
ACGAACCCGTGCTGAGAGAAATCGCCACGAAATTAGACGAAGCTGGGCTA
GGCAAAACACACCTCGTGCAAGACAGAAGCCTTGGGCCTGGGTTACACGT
AAGTACGCAAAGGAAAAAAGGACGGGCAGGGGGGATAGTAGGGGAGGTTT
CCTGTCGCTCTGCGGTGGTAATTCTCAACCTCATCGATGAATCGCATAAA
TCTTTCTTTGCATCGTTTGGACATGTAGAATCAGCATTACCGCTTTGACA
CGTCGGATGCCGGTCCAGTCTTCGTCAAAGTAAGTGAACAGTCTCCCCTC
CCTCCTTCCCGCCTCCCCCCCCCCTCCCTTCCTTCCCCTCCCTCAGATGA
TCCATTGCTTTGGCCCACAGGCTTCATTCAGGAGTAGAACTTTGGCTATG
TCTACCACCACTGACGCCTCTCACGTTTATTTGTTTATCGCCTCTATAAT
CCGCTACAACAGCACTGTGCCTAACCCTCTCTCCCTCCCTTCCCCCCAAA
CAAATATCAAGATCAACCATCGCTTCGGGTTCATCCAAAATTTCCAATCG
GAATTCGAAAGTCTGCGTGTACTAGCGGCCACTGATACTCTCAGGGTCCC
TCGTCCCTATATGAGTGGGCTTCTCCAAGACGGTCATTCATTCCTGGCTA
TGGAGTACATGGAGCCCGTACCCTTTGGTCCCTCCATCAAGGTAAGACCT
CCCTCCATCCCGCCCTCCCTCCCTCCTTCCCACATTGCGGTCCTCCCTTC
TCCCCCTGTCCATTCGTCCCTCCCTTTCTCCTCCCTCCATCTCTCTCAGT
CGTCTCGAGCTCAAGCTTATTCAGCCCATCCAGATAAGCAACCAAAAAAA
CGGTTTCCCCCCTTTCCAACCCCTCCCTCCCTCCCTCCCTCCCCTCCAGA
GTGTCGCCACCGACCTAGGCGACAGCCTAGCACGTCTTCATATGGCTCCC
TTGCCCTTTATGGGAGAGCATTACGGCTTCCAAAACAACAACTACCTCGG
TACGTCCCTTCCTTCCCTTCCTCCCTCCCCCCCTCCCTTCCCTCCTCCTC
ATGGTACTCGCCTCGTCAAATCAAGACCCGTCATTCCATCCATCCCCGCC
CACCCTCCCTCCCTCCTTCTCTCCCTCCCTCCCTCCCTCTCTCCAGGCAT
GACCGAGCAGGCGAACGAGTGGGGGGAGGACTTCTGTTCGTTCTTTATCC
ATAAACGACTCGCGCCTCAACTCCGAATAGCGGGGCAAAAAGGGAAGGGG
GGAGGGAAGGAGTTGGAGGGGGTCTTTGGAGGAAGAAATGTGGAGAGGCT
GCTGTTCAAGGTGAGGGAGGGAGGGAGGAATGAAGGGAGAAAAGGAGGAA
GGGAGGGAAGGAGGGAGGGCTGGAGGGCTGGAGGGCTGAAGGGAAGGTGA
ACAAAACGCAAGCATAACTCTAATTTTTGCCTTCCTTTCTTTCCTTCCTC
CATCCATCTCTCCCACCCTCCCTCCCTCCTTCACTTACTTCGCTATCCCT
TGATAGGTCGAAAAGATTTTAGAACCAGTCCGTCACGTTCGACCCTCTCT
GCTCCATGGAGGTGCGTCCTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCATCCTTCTTCCCTCTCCTCCCAACCTCTTCTCTGCCCTCTC
TTCTCCCTATCCCATTTTCTTTTTCCACCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCAGACCTATGGCAAGGCAACA
GCGGTGCCACCAAAATGGGGTTCGGAAGGGAGGGAGGGAAGGAACGCAAG
GCCTTTGCGCATGATCCGGCGTGTTGGTATGGACATGCCGAGTTTGATCT
TGCCCTCAGTGGCATGTTCGGAGGCTTCCTCCCCGAGTTTTATCAGGCGC
GTCCCTCCCTCCCTCCTTCCCTCTCTATCTCCTTCCCTCCCTCTCTTTCT
CCTTCCCTCCCTCTCCCTCTCTCCTTCCCTCCCTCCCTCCTTCCCTCCCT
CCCTCCTTCCCCCCTCCCTCCCTCCCTCCCTCCCTCTCCCTCCCTCCCTA
TCTCCTTCCCTCCCTCCCTATCTCCTTCCCTCCCTTCCTATCTCCTTCCC
TCCCTCCCTATCTCCTTCCCTCCCTTCCTATCTCCCTCCCTCCCTTCCTC
CCTCCTATCTTCACAATCATGTCCACCCCCTCGTATCCTTCCTCTACTTC
CTCACAATTTTTATCCTCATGTCGTTCCCTCCCTCCCTCCCTCCTTCCCT
CCCTCTTAAGGCCTACCATGCCCTCCTTCCTCTCCAGGATGGGTTCGAGG
AACGACAGGAAGTCTACAGACTCTATCACTACGTTCATCACATGAACAAC
TTTGGTGCAGGTAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGATTGGAGAAATGAGAGGAAGTCCACAGGGTCTACCA
CTCCATCCAACTCGCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTTCCTACCAGGGTGGGGCACGGCAGGCTCAGTCGCGGACCCTA
AAGGTTACTACGAACGGTGTCTAGCGTTGATGAAGAGCATTAATTCAAGA
TGAGGGAGGGAGGGAGGGAGGGAGGGATGGAAGACTCTGAGTATTGGTGT
AGAGCGTGTATTGCTGATGAAGAGAATTAGCTCGAAATGAGGGAGGGAGG
GGGAAGAGAGGGAAGGGG
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Coding sequence (CDS) from alignment at chr30:389392..392309-

>NO30G01060.1 ID=NO30G01060.1|Name=NO30G01060.1|organism=Nannochloropsis oceanica|type=CDS|length=1185bp|location=Sequence derived from alignment at chr30:389392..392309- (Nannochloropsis oceanica)
ATGCAACCACCACCACGTCTCTTTGCTCTTTTGCTTATTCCCCTCCTCCT
AGCTCTCTTTATCTCTCCCTGGGTCGTCATCGTCGATGCCTTTGTCTCCC
TCCCGTCCTCCTCCGGCTCGCCCTCGTCCTCCTGCCTGCCTCTCTACGCA
CGCCCCATCCTTTCCTCAGCCGAGCGCCTTACACTAAACGAACCCGTGCT
GAGAGAAATCGCCACGAAATTAGACGAAGCTGGGCTAGGCAAAACACACC
TCGTGCAAGACAGAAGCCTTGGGCCTGGGTTACACAATCAGCATTACCGC
TTTGACACGTCGGATGCCGGTCCAGTCTTCGTCAAAATCAACCATCGCTT
CGGGTTCATCCAAAATTTCCAATCGGAATTCGAAAGTCTGCGTGTACTAG
CGGCCACTGATACTCTCAGGGTCCCTCGTCCCTATATGAGTGGGCTTCTC
CAAGACGGTCATTCATTCCTGGCTATGGAGTACATGGAGCCCGTACCCTT
TGGTCCCTCCATCAAGAGTGTCGCCACCGACCTAGGCGACAGCCTAGCAC
GTCTTCATATGGCTCCCTTGCCCTTTATGGGAGAGCATTACGGCTTCCAA
AACAACAACTACCTCGGCATGACCGAGCAGGCGAACGAGTGGGGGGAGGA
CTTCTGTTCGTTCTTTATCCATAAACGACTCGCGCCTCAACTCCGAATAG
CGGGGCAAAAAGGGAAGGGGGGAGGGAAGGAGTTGGAGGGGGTCTTTGGA
GGAAGAAATGTGGAGAGGCTGCTGTTCAAGGTCGAAAAGATTTTAGAACC
AGTCCGTCACGTTCGACCCTCTCTGCTCCATGGAGACCTATGGCAAGGCA
ACAGCGGTGCCACCAAAATGGGGTTCGGAAGGGAGGGAGGGAAGGAACGC
AAGGCCTTTGCGCATGATCCGGCGTGTTGGTATGGACATGCCGAGTTTGA
TCTTGCCCTCAGTGGCATGTTCGGAGGCTTCCTCCCCGAGTTTTATCAGG
CCTACCATGCCCTCCTTCCTCTCCAGGATGGGTTCGAGGAACGACAGGAA
GTCTACAGACTCTATCACTACGTTCATCACATGAACAACTTTGGTGCAGG
GTGGGGCACGGCAGGCTCAGTCGCGGACCCTAAAGGTTACTACGAACGGT
GTCTAGCGTTGATGAAGAGCATTAATTCAAGATGA
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Synonyms
Publications