NO30G00980.1, NO30G00980.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO30G00980.1
Unique Name	NO30G00980.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1479
Alignment location	chr30:363908..367580 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr30	genome	chr30:363908..367580 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO30G00980.1 vs.
Match: XP_004992677.1 (rhesus-associated glycoprotein [Salpingoeca rosetta]; EGD75033.1 rhesus-associated glycoprotein [Salpingoeca rosetta])

HSP 1 Score: 337.8 bits (865), Expect = 5.600e-89
Identity = 188/429 (43.82%), Postives = 266/429 (62.00%), Query Frame = 0

Query:   12 FPLTLFLMQAFILIIWVLYGSYAPDADGTASDKHPSNYTPTTLYQSWLGVHAMMLFGFGNLMTFLHRHGYSASGYTFLMTCLGLQWCIILYSFMHGLIGGGGLRGPTLDVTMLFQGDFGVAAVLISFGALIGKVSPTQLLVLCFLEIIFYAASEAVISEVLQAEDAGGSIVIHTFGAYFGLVCSYILTPPSMVLDGDDRENRASYTSDMFAMIGTLFLFLYWPSFNGGLLDSATNQQERALVNTVLSLAGSCLATFLFSKCLRG-HFSMVDVQNATLAGGVAVGSTCNMNLGPGGALSVGLVSGALSTVGFAKLQPFLADKFNLQDTCGIHNLHGMPGIFGGLVGVLCALLIPPSAYGGDIHAIYDARVNNPVAGNAGRGAALQSIYQVLAIVTALVFAVVGGTITGYVLKAVPHSVPPGKLFMDDADW 440
            F L LFL +A I+   VLYG +    D TA  + P +   T  Y  +  VH M+  GFG LM+FL+++  S+ G TFL+    LQ  +++  F H +  GG ++ P L +  L  GDFG A VLIS GA++G+ SP QLLV+  +E+  Y  +EA++   ++  D GGS++IH FGAYFG+ C+++L P +     D   N +S  SD FAMIGT+FL++YWPSFNG L     N + R ++NT+LSL+ SC+ TF+ S+ LRG  FSMVD+QNATLAGGVA+G++ N+   P GA++VG ++G +STVGFA+LQ  L  KF L DTCG+HNLHGMPGI GGL G L A +     Y           + + +   A R A  Q+ YQ+L +  ++  ++V G +TG VL+ +P    P  L+ D+ DW
Sbjct:   71 FSLGLFLAEAAII---VLYGVFVEYGD-TADPRQPDSTAVTDYYGMFRDVHVMVFIGFGFLMSFLNQYTLSSVGLTFLVGAFALQVSMLVVPFWHRVFAGGWVKIP-LTLETLVTGDFGAATVLISMGAVLGRTSPLQLLVMVVIELFAYGFNEALLVNEIKVADVGGSMIIHAFGAYFGVACAWVLGPRN----ADQTNNASSRYSDTFAMIGTVFLWMYWPSFNGVLAGDTGNSRHRTILNTLLSLSASCIVTFVVSRMLRGGKFSMVDIQNATLAGGVAIGASANLFTTPWGAMTVGSIAGIISTVGFARLQDLLQRKFGLYDTCGVHNLHGMPGILGGLAGALFAGISTVDDYSA-------TTLTHVIPSRADRTAGQQAGYQLLGLAVSIGMSLVSGALTGVVLR-MPGLQQPSSLYDDEEDW 482

The following BLAST results are available for this feature:

BLAST of NO30G00980.1 vs.

BLAST of NO30G00980.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
XP_004992677.1	5.600e-89	43.82	rhesus-associated glycoprotein [Salpingoeca rosett...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO30G00980	NO30G00980	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO30G00980.1	NO30G00980.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO30G00980.1.cds1	NO30G00980.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO30G00980.1.cds2	NO30G00980.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO30G00980.1.cds3	NO30G00980.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO30G00980.1.cds4	NO30G00980.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO30G00980.1.cds5	NO30G00980.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO30G00980.1.cds6	NO30G00980.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO30G00980.1.cds7	NO30G00980.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO30G00980.1.cds8	NO30G00980.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO30G00980.1.cds9	NO30G00980.1.cds9	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO30G00980.1.cds10	NO30G00980.1.cds10	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO30G00980.1.cds11	NO30G00980.1.cds11	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr30:363908..367580-
coding sequence from alignment at chr30:363908..367580-

mRNA sequence

>NO30G00980.1 ID=NO30G00980.1|Name=NO30G00980.1|organism=Nannochloropsis oceanica|type=mRNA|length=1479bp
ATGGATGATAACCATGGAAAGACCGGCCTGGCCTTCCCCTTGACCCTATT
CCTCATGCAAGCCTTCATCCTTATCATTTGGGTGCTTTACGGCTCCTACG
CCCCGGATGCCGACGGCACGGCCTCGGATAAACATCCTTCCAATTACACC
CCCACGACGCTATACCAGTCCTGGCTGGGGGTCCACGCGATGATGCTTTT
TGGCTTTGGGAACCTCATGACCTTCCTGCATCGACACGGCTACTCGGCCA
GCGGCTATACTTTTCTCATGACCTGCCTCGGTCTCCAATGGTGCATCATC
CTCTATTCATTCATGCACGGCCTCATCGGTGGGGGGGGGTTGCGAGGGCC
CACTCTAGATGTGACCATGCTCTTTCAGGGTGATTTTGGCGTTGCCGCCG
TCCTCATATCTTTCGGCGCCTTGATTGGAAAGGTCTCACCCACCCAGCTC
CTGGTCCTATGTTTCCTCGAAATAATTTTCTATGCGGCCTCTGAAGCCGT
TATCAGCGAGGTCCTTCAAGCGGAGGATGCAGGAGGTTCCATCGTCATCC
ACACGTTTGGAGCGTACTTCGGCCTCGTTTGCTCCTACATCCTCACCCCC
CCTTCAATGGTCCTCGATGGCGACGACCGGGAGAACCGCGCTTCCTACAC
CAGCGATATGTTCGCTATGATTGGCACCCTCTTCCTCTTCCTCTACTGGC
CCTCCTTCAATGGTGGCTTGCTTGATTCGGCCACGAACCAACAAGAGAGG
GCGTTGGTCAACACCGTCCTTTCCCTCGCTGGTTCCTGCCTCGCTACCTT
CCTCTTCTCCAAATGCCTGCGGGGACACTTCAGCATGGTGGACGTTCAGA
ACGCCACCTTAGCAGGAGGAGTGGCTGTCGGTAGCACGTGTAATATGAAC
CTCGGGCCGGGCGGTGCTCTTTCAGTCGGGCTGGTGTCAGGCGCTCTCTC
GACCGTTGGCTTCGCCAAGCTCCAGCCGTTTCTCGCCGACAAATTCAACT
TGCAAGATACGTGCGGTATCCACAATCTGCACGGCATGCCCGGGATCTTC
GGGGGCCTCGTCGGCGTGCTTTGCGCTCTCTTAATCCCTCCTTCTGCCTA
CGGAGGTGACATTCACGCCATTTACGACGCCCGAGTCAACAACCCTGTAG
CGGGAAACGCCGGCCGAGGGGCTGCCCTTCAATCCATCTATCAAGTGCTT
GCCATTGTCACAGCCCTCGTTTTTGCCGTCGTCGGTGGGACCATCACCGG
CTACGTCCTCAAGGCTGTCCCTCATTCCGTCCCTCCCGGGAAACTTTTCA
TGGATGATGCCGATTGGGAAGTGCCCTCCCTCCAGCCCTCCTTCGGCCGC
TTCTTCTCCCAACGCTACACGAAGGAGGGAGGGAGGGAGGGAGGGAAGAC
GGTGTCGTTCGGAAAAAATAATGGGGGTCTGCATGCGAAGTACGAGAGCA
TCGGGGAGGGAGGGGGTGGGCTGGTCTAG

protein sequence of NO30G00980.1

>NO30G00980.1-protein ID=NO30G00980.1-protein|Name=NO30G00980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=493bp
MDDNHGKTGLAFPLTLFLMQAFILIIWVLYGSYAPDADGTASDKHPSNYT
PTTLYQSWLGVHAMMLFGFGNLMTFLHRHGYSASGYTFLMTCLGLQWCII
LYSFMHGLIGGGGLRGPTLDVTMLFQGDFGVAAVLISFGALIGKVSPTQL
LVLCFLEIIFYAASEAVISEVLQAEDAGGSIVIHTFGAYFGLVCSYILTP
PSMVLDGDDRENRASYTSDMFAMIGTLFLFLYWPSFNGGLLDSATNQQER
ALVNTVLSLAGSCLATFLFSKCLRGHFSMVDVQNATLAGGVAVGSTCNMN
LGPGGALSVGLVSGALSTVGFAKLQPFLADKFNLQDTCGIHNLHGMPGIF
GGLVGVLCALLIPPSAYGGDIHAIYDARVNNPVAGNAGRGAALQSIYQVL
AIVTALVFAVVGGTITGYVLKAVPHSVPPGKLFMDDADWEVPSLQPSFGR
FFSQRYTKEGGREGGKTVSFGKNNGGLHAKYESIGEGGGGLV*

mRNA from alignment at chr30:363908..367580-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO30G00980.1 ID=NO30G00980.1|Name=NO30G00980.1|organism=Nannochloropsis oceanica|type=mRNA|length=3673bp|location=Sequence derived from alignment at chr30:363908..367580- (Nannochloropsis oceanica)
ATGGATGATAACCATGGAAAGACCGGCCTGGCCTTCCCCTTGACCCTATT
CCTCATGCAAGCCTTCATCCTTATCATTTGGGTGCTTTACGGCTCCTACG
CCCCGGGTAAGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTTTCCCTTCA
TTCCTAGTCGCCAGCGTAGACAGCAACAATTACAGTTGACTTATTTTTTA
CATTCCACTTTATAACGAGTCCTTTTTGGTCGCCACATCTCTAATAACCT
TCCCCGTGCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCTCCTCCCTTCTGCAGATGCCGACGGCACGGCCTCGGATA
AACATCCTTCCAATTACACCCCCACGACGCTATACCAGTCCTGGCTGGGG
GTCCACGCGATGATGCTTTTTGGCTTTGGGAACCTCATGACCTTCCTGCA
TCGACACGGCTACTCGGCCAGCGGCTATACTTTTCTCATGACCTGCCTCG
GTACGCCCTCCTTCCCGCCTTCCCGCCCTCTCACTTTACAATCTCGACAT
TTCTTTGCATTGAATGCCTCGGATTCTTTTCCATCGTGTCCGATTCCTCT
CAAGCTGTCTGTCCCTCCCTCCCTTCCTCCTTCCCTCCTCTTTCCCCTTC
CCTCCCTCCCTCCCCATCGTATCCACCTCCTCAAGCCTACCATTTGGACA
CCCACAGTATATTCCCTCCCATATCCTTCCCAACACATCATTTCCCTCCC
TCTCTCCCTCTCCTCCCTCCCTACCCAGGTCTCCAATGGTGCATCATCCT
CTATTCATTCATGCACGGCCTCATCGGTGGGGGGGGGTTGCGAGGGCCCA
CTCTAGATGTGACCATGCTCTTTCAGGGTGATTTTGGCGTTGCCGCCGTC
CTCATATCTTTCGGCGCCTTGATTGGAAAGGTATGCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCACCTCCCTCCCTC
CCTCCCTCCTTCCCTCCCTCCCTCCCCACCTCCCTCCCTTCCTCCCTCCC
TCCCTCCAGGTCTCACCCACCCAGCTCCTGGTCCTATGTTTCCTCGAAAT
AATTTTCTATGCGGCCTCTGAAGCCGTTATCAGCGAGGTCCTTCAAGCGG
AGGATGCAGGAGGTTCCATCGTCATCCACACGTTTGGTGTGTGCGTTGGC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCCTCCCTCCCTCCC
AGGCGCTCAGGTCTCCTCCTTTCTCATCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCAGGCGCTCAGGTCTCCTCCTTTCTCATCCTCCCTCCGTCCCTC
CCTCCCTCCCTCCCTCCGTCCCTCCCTCCCTCCCAGGAGCGTACTTCGGC
CTCGTTTGCTCCTACATCCTCACCCCCCCTTCAATGGTCCTCGATGGCGA
CGACCGGGAGAACCGCGCTTCCTACACCAGCGATATGTTCGCTATGATTG
GCACCCTCTTCCTCTTCCTCTACTGGCCCTCCTTCAAGTGCGTCCTCCCT
CCCTCCCTCCCTCCCGCCCTTCACCCTCCTTCCTTCCCTCCCCTTCCTCA
GTGCAGGCTCCACACAGGCACAAGAGAGGGCGTTGGTCAACACCGTCCTC
TCACCTTCTCCCTCCCTCCCTCCCTCCCTCCCTCAGTGGTGGCTTGCTTG
ATTCGGCCACGAACCAACAAGAGAGGGCGTTGGTCAACACCGTCCTTTCC
CTCGCTGGTTCCTGCCTCGCTACCTTCCTCTTCTCCAAATGCCTGCGGGG
ACACTTCAGCATGGTACCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCACTTCCTCCCTTCCCTCCTCATCACAATTTCGCGCCCGTCATTC
CGACACCCCTACCATCTTCTCTTCAACATACTTCCCTCCACCACCAATAA
CTGGCTGACCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCGCCC
TCCCGCCCTATCGCTCTCCGGCCCTCCCTCCCTCCCACCCTCCCTTCCTC
CCTAGGTGGACGTTCAGAACGCCACCTTAGCAGGAGGAGTGGCTGTCGGT
AGCACGTGTAATATGAACCTCGGGCCGGGCGGTGCTCTTTCAGTCGGGCT
GGTGTCAGGTAGGGAGGGAGGGAGGGAGGGAGGGAGAGAGGAAGGGTCAG
ATATTGACATGAGTGGAAGTAGAGGGGAGATTAAAAGTACGAATGGTGGT
GAGGGGCCTGAGGAGGTAAAGATGTAATGGGGAGGGAGGGAAAGAGGGAA
GGCGAAGTTCAATTCAACATTCAGAAGAATCAATAACAGAATGGCGCTCA
CCCACCCTCCCTCCCTCCCTTCTTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCTTCCAGGCGCTCTCTCGACCGTTGGCTTCGCCAAGCTC
CAGCCGTTTCTCGCCGACAAATTCAACTTGCAAGATACGTGCGGTATCCA
CAATCTGCACGGCATGCCCGGTAAATCACGCCCTCCCTCCCTCCCTCTCC
CCCTCCCTCCCTACCTCCAAGCGCTCTCTTCACCGCTGGCATGGGGAGGC
TTCAAGAACCAAACCACGCACATTTCCCTCCCTTCCTCCCTCCCTCCCTC
CCTCCCTCAGGGATCTTCGGGGGCCTCGTCGGCGTGCTTTGCGCTCTCTT
AATCCCTCCTTCTGCCTACGGAGGTGACATTCACGCCATTTACGACGCCC
GAGTCAACAACCCTGTAGCGGTACGTCCTCCCTCCCTCTCTCCCTCCTTC
CCTCCTTCCCTCCCTTCCTCCCTTCCTTTTATCTCTTCAGGCGGCATTCA
CGCGCAAAGGGGAGAGGAGGGAGGAAGGGAAGGAGGGAAGGAGGGAGGGG
GGGAAAAAGAGATGACAGACGAGAACATGAGTGTATCAATACGGAAATTC
CAAAACAATCAACGTACCACTCAATCGAAATCAATCAATCAATCAATCAT
GACAAATCGATCATCACATCAACGCACACACTCTCGCATCACATCACATC
ACATCAACACACAGGGAAACGCCGGCCGAGGGGCTGCCCTTCAATCCATC
TATCAAGTGCTTGCCATTGTCACAGCCCTCGTTTTTGCCGTCGTCGGTGG
GACCATCACCGGCTACGTCCTCAAGGTATGATCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCTTCC
CTCTTTTCCTCCTTCCTTTCCTTGTGCATCCCTTCCCTCTCTCCCTCTTC
CTCTCTCTCCCCACCGTGCCTTTCTCGTCCATCCCGTCATTCTGACGCTC
CTGTCGTGATTCACATACACCTCCCCAAAATACACATCCTCTCCCGTCCT
CCTCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCCCT
CCCTCAGGCTGTCCCTCATTCCGTCCCTCCCGGGAAACTTTTCATGGATG
ATGCCGATTGGGAAGTGCCCTCCCTCCAGCCCTCCTTCGGCCGCTTCTTC
TCCCAACGCTACACGAAGGAGGGAGGGAGGGAGGGAGGGAAGACGGTGTC
GTTCGGAAAAAATAATGGGGGTCTGCATGCGAAGTACGAGAGCATCGGGG
AGGGAGGGGGTGGGCTGGTCTAG

Coding sequence (CDS) from alignment at chr30:363908..367580-

>NO30G00980.1 ID=NO30G00980.1|Name=NO30G00980.1|organism=Nannochloropsis oceanica|type=CDS|length=1479bp|location=Sequence derived from alignment at chr30:363908..367580- (Nannochloropsis oceanica)
ATGGATGATAACCATGGAAAGACCGGCCTGGCCTTCCCCTTGACCCTATT
CCTCATGCAAGCCTTCATCCTTATCATTTGGGTGCTTTACGGCTCCTACG
CCCCGGATGCCGACGGCACGGCCTCGGATAAACATCCTTCCAATTACACC
CCCACGACGCTATACCAGTCCTGGCTGGGGGTCCACGCGATGATGCTTTT
TGGCTTTGGGAACCTCATGACCTTCCTGCATCGACACGGCTACTCGGCCA
GCGGCTATACTTTTCTCATGACCTGCCTCGGTCTCCAATGGTGCATCATC
CTCTATTCATTCATGCACGGCCTCATCGGTGGGGGGGGGTTGCGAGGGCC
CACTCTAGATGTGACCATGCTCTTTCAGGGTGATTTTGGCGTTGCCGCCG
TCCTCATATCTTTCGGCGCCTTGATTGGAAAGGTCTCACCCACCCAGCTC
CTGGTCCTATGTTTCCTCGAAATAATTTTCTATGCGGCCTCTGAAGCCGT
TATCAGCGAGGTCCTTCAAGCGGAGGATGCAGGAGGTTCCATCGTCATCC
ACACGTTTGGAGCGTACTTCGGCCTCGTTTGCTCCTACATCCTCACCCCC
CCTTCAATGGTCCTCGATGGCGACGACCGGGAGAACCGCGCTTCCTACAC
CAGCGATATGTTCGCTATGATTGGCACCCTCTTCCTCTTCCTCTACTGGC
CCTCCTTCAATGGTGGCTTGCTTGATTCGGCCACGAACCAACAAGAGAGG
GCGTTGGTCAACACCGTCCTTTCCCTCGCTGGTTCCTGCCTCGCTACCTT
CCTCTTCTCCAAATGCCTGCGGGGACACTTCAGCATGGTGGACGTTCAGA
ACGCCACCTTAGCAGGAGGAGTGGCTGTCGGTAGCACGTGTAATATGAAC
CTCGGGCCGGGCGGTGCTCTTTCAGTCGGGCTGGTGTCAGGCGCTCTCTC
GACCGTTGGCTTCGCCAAGCTCCAGCCGTTTCTCGCCGACAAATTCAACT
TGCAAGATACGTGCGGTATCCACAATCTGCACGGCATGCCCGGGATCTTC
GGGGGCCTCGTCGGCGTGCTTTGCGCTCTCTTAATCCCTCCTTCTGCCTA
CGGAGGTGACATTCACGCCATTTACGACGCCCGAGTCAACAACCCTGTAG
CGGGAAACGCCGGCCGAGGGGCTGCCCTTCAATCCATCTATCAAGTGCTT
GCCATTGTCACAGCCCTCGTTTTTGCCGTCGTCGGTGGGACCATCACCGG
CTACGTCCTCAAGGCTGTCCCTCATTCCGTCCCTCCCGGGAAACTTTTCA
TGGATGATGCCGATTGGGAAGTGCCCTCCCTCCAGCCCTCCTTCGGCCGC
TTCTTCTCCCAACGCTACACGAAGGAGGGAGGGAGGGAGGGAGGGAAGAC
GGTGTCGTTCGGAAAAAATAATGGGGGTCTGCATGCGAAGTACGAGAGCA
TCGGGGAGGGAGGGGGTGGGCTGGTCTAG

Synonyms

Publications