Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr30 genome chr30:174768..178840 +
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO30G00410.1 vs.
Match: CBN77609.1 (conserved unknown protein [Ectocarpus siliculosus])
HSP 1 Score: 143.3 bits (360), Expect = 2.500e-30
Identity = 114/336 (33.93%), Postives = 168/336 (50.00%), Query Frame = 0
Query: 137 LPKKMSSMAHIVQDPLSHLEE----GQPRVVFRAIDMGRDLEGQGPWDAILHKLSEDVALRDICPDAARRLQTLEAYVDRHPQTVLIDHPRDLERIVSRATTCQVLHALAQAHPHA--RIRPPRFLLL--HAPPSTPLASSPSSDEGPG-EGGVEARLRAASFSYPLIAKPVLACGSQDSHQLLILGSAHGLQALPPSTPMVLQEYANHDGILYKVYVLGDYIQLFERPSLPNLAPSASLRADVAFDSQLPYPSAQDLLLPSDLPSARDG-ARGEEERRESGKGDGRRGG------------GRTGGPVGEAALTSSPPPQTPVPPSRSRPPSLPQ 451
+ KKM +MA + LSH E + F ++ E D ILHKLSED+ RD+ P+ RL +EAY+DR+P+T ++D + ++R TT ++L + H A RPPRF++L H P GPG +GG+ R ++P+I KPV ACG++ SH ++++ G+ AL P P+V+QE +H L+KV V+GD +++ ERPSLP+L P L AFDSQ PYP+ +++ S AR G +G+ +G G G G+ GE + SS PP R R P + Q
Sbjct: 1 MAKKMETMAEV---GLSHAEVMMVGPMDGLEFHPLNFSERPEEHRRLDVILHKLSEDIMFRDVQPEGDARLSWIEAYLDRNPKTAILDPIDRVSNCINRVTTLKLLEDAYRRHGAAGGMPRPPRFMVLEDHEP------------SGPGADGGIVPR---NGLAFPVICKPVEACGTRGSHTMVVVLDQAGVSALTP--PVVVQECRSHGAKLFKVCVIGDEVRVHERPSLPDLPP--GLTGSFAFDSQKPYPALEEVKAASAATRARSGRLQGQPPTAGNGTTPGHNGDPSRSASSAEEVPGQLRQANGERSGKSSKPPLPRPKALRDRGPDIRQ 314
The following BLAST results are available for this feature:
BLAST of NO30G00410.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
500 1000 1500 2000 2500 Expect = 2.50e-30 / Id = 33.93 Sequence CBN77609.1
Match Name E-value Identity Description
CBN77609.1 2.500e-30 33.93 conserved unknown protein [Ectocarpus siliculosus] [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO30G00410.1 ID=NO30G00410.1|Name=NO30G00410.1|organism=Nannochloropsis oceanica|type=mRNA|length=2964bp back to top protein sequence of NO30G00410.1
>NO30G00410.1-protein ID=NO30G00410.1-protein|Name=NO30G00410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=601bp back to top mRNA from alignment at chr30:174768..178840+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO30G00410.1 ID=NO30G00410.1|Name=NO30G00410.1|organism=Nannochloropsis oceanica|type=mRNA|length=4073bp|location=Sequence derived from alignment at chr30:174768..178840+ (Nannochloropsis oceanica)ATGGCCAGCCCGAATGAGGGTGCTTCCTACCCCTCC
TTCCCCCCCTCTCCGTCCTCCCCCTGCCCTCCGCTCACTTCCTCTTCCCC
CACTTTCAAGAATGCCAAATTGAAGGTTATTGAAACTACGATCATCATGC
CCCAAAAAAAAGCGGTGGAGCATGAAAACGACACACCCCCCTTCTCGCCC
TCAACCTCCTCCTCTACTGCCCCTGCCTCCTTCCCCCTCTCCTCCACCTC
CACCACCACCTCCTCCTCCTCATTCTACCCCTCTTCCTCCTCCCTCTCGG
CTACCACCTCTTGTCCCTTCCTGACGCGCAAATTCAAGGGCCAAAAATCT
ACCATCACTAATACTAAAGGGGAGGAGGAGGAGAAGGAAGAAGAGGGCAC
GGTCAAAGTGGGATACGCTTTCCTTCCCAAGAAGATGAGCAGCATGGCGC
ACATCGTACAG GTTAGGCCCCTTTCTCCCTCCCGTCCTCCCTCCCTCCCT
CCCTCCCTTCCTCCCTCTGACGGTCTCTCACTCGGACGGGAGGGCAATAA
GACCGTTCGATGTCCCCCTTGATGATGAATGACTCTTACAATCCCTTTCC
CCCTCCCTCTTTCAGGACCCCCTCTCGCACCTTGAAGAGGGACAACCACG
CGTCGTCTTCCGGGCCATCGATATGGGCCGGGACCTGGAAGGGCAGGGAC
CCTGGGATGCCATCTTGCACAAGCTCAGCGAGGACGTGGCGCTTAGAGAC
ATCTGCCCCG GTGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAATGA
GGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAATGAGGGAGG
GAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGTATGCTGGTAAA
TTCTTGTGCCCAAACAAAGCGACGGTGGATGGTCCTCATCACCCCTCCCT
CCCGCCCTCTCATCCGCCCCTCTCCCTCCTAGACGCCGCACGCCGCCTGC
AAACCCTGGAGGCCTACGTCGATCGGCACCCGCAGACCGTGCTCATCGAC
CACCCTCGCGACCTGGAGCGGATTGTGTCCCG GTACCATCCTCCCTCCCC
TCCCTCCCTCCCTCCCTCCCTCCCGCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCTGTCTCTTTCTCCCGTGTGCCGCAACAATTTGATCATTTCTCAGCT
GCAGCTGCTGCCGTTGTTGTTGTTCCTCCTGCTGCTGCTGCTACTGCTGC
TGCCGCCGTCGCTGCTGTTATTGTTGTTGTCCTTGCTCTTGCAGATTCTC
CCTCCTCTGTTCTGTTCTCCACCTGCTCTTTCGTTTTCCCTCTCGCCTCC
CTGGAGCCCTCCCTTCGACCATGACTCACCACCCCTCCCTATTTCCCTCC
CTCCCTCATTCCCTCCCTCCCTCCCCCAGCGCCACCACCTGCCAAGTTCT
TCACGCCCTCGCTCAGGCTCACCCGCACGCCCGCATCCGCCCGCCTCGCT
TCCTCCTCCTCCATGCCCCCCCTTCCACACCCCTTGCCTCCTCCCCTTCC
TCCGACGAGGGGCCGGGGGAGGGCGGGGTCGAGGCACGGCTGCGGGCGGC
CTCCTTCTCCTACCCCTTGATTGCCAAGCCCGTCCTGGCCTGTGGCAGCC
AGGACTCCCACCAGCTCCTCATCCTCGGCTCGGCCCACGGCCTTCAAGCC
CTCCCTCCCTCCACTCCAATGGTGCTCCAG GTACACCCCCTCCTTCTCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCCCCCTTCCTCCTTTCCTCCGCCTC
GCTGTGCAGGTGCCTCCCCTCCCGTACCCTGACATCCGAAACTCCTGACC
TTCTAGTCTCCCCCCCCTCCCCTCCCCCCCTCCCTCCCTCCCTCCCTCCC
TTCCCCCCCTCCCTCCCCCCCAGGAGTACGCGAACCACGACGGGATCCTT
TACAAAGTCTACGTCCTCGGCGATTACATCCAG GTACGGCCCACCCATTC
GCCCTCCCTCCCTCCCCACCCCCCCTCCCTCCCATCCTCCTTCTCGTGTC
CATCTGTCATGGTGCGGACACCTCCCCTCCTAGAGCTCACCGCCCCTCCC
TCCTCGATCTCACACGTCTCTTAACCTCCCCCTCCTCCCTCCCTCCCTCC
CTCCCTCCCGTCCTCCTCCCTTGCAGCTCTTCGAGCGGCCCTCTCTACCG
AATCTGGCACCGTCGGCCTCACTGCGAGCCGATGTCGCCTTTGACTCCCA
ATTACCCTACCCCTCCGCCCAGGACCTCCTCCTCCCTTCCGATCTCCCTT
CCGCCCGTGACGGTGCCCGAGGGGAGGAGGAGAGAAGGGAAAGCGGCAAG
GGCGACGGGAGAAGGGGTGGAGGGAGGACGGGAGGGCCGGTCGGAGAAGC
TGCCCTTACTTCCTCCCCACCACCGCAAACGCCGGTGCCTCCCTCCCGCT
CTCGCCCTCCCTCCCTCCCTCAGGTCCGGCTGGCCGCCCGCCTCTTGCGA
GAGGCCTTTAACCTCCACCTCTTCGGTTTCGACGTCATTGTTCCCTCCTC
CTCCTCCCCCTCCTCCTCCTCCTCTTTCCCCGTCAGACGCATAGGCGGCA
ACAAGGAAGAGGAGGAGGACGAGGGCGAGGGCGAGGACGAGGGCGAGGGC
GAGCTGGTGATCGTGGACGTGAACTTCTTCCCCTCTTTCAAGGAGGTGCA
GGACTTTCCCGCGCGCCTCCGAAGCTTCCTGAGGGAGAAGACGAGGGAGA
GGAGGAGGGAGGGGGGGGGCAGGGCGGAGCGAAATGAATGTTGTTGGTGG
CTAGGTGCCCAGTCACAAATAGAATGTTCCCAAATCACAAGTGCCATGTA
TCAATTGACATGTAAATACACAGATTGGAATGTAAGAAGGGGAACAAATG
GACATGGTGATAAACGAAAGAGATGA back to top Coding sequence (CDS) from alignment at chr30:174768..178840+
>NO30G00410.1 ID=NO30G00410.1|Name=NO30G00410.1|organism=Nannochloropsis oceanica|type=CDS|length=1803bp|location=Sequence derived from alignment at chr30:174768..178840+ (Nannochloropsis oceanica) back to top