NO30G00370.1, NO30G00370.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO30G00370.1
Unique Name	NO30G00370.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1963
Alignment location	chr30:162098..165812 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr30	genome	chr30:162098..165812 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO30G00370.1 vs.
Match: EWM27512.1 (lipase class 3 [Nannochloropsis gaditana])

HSP 1 Score: 204.1 bits (518), Expect = 9.300e-49
Identity = 107/278 (38.49%), Postives = 156/278 (56.12%), Query Frame = 0

Query:  173 WGQQKVYWLNYPLISPVTHKESGRVGGREGRRTPFAVSMVEGGGERMLIIFRGTVWREEWNRDFQYKYATDPLAAEVFPEGHVHEGCFDVFKMLHKELADEVRRVRPKHIMIGGHSLGGTQAIMHGFHLQQLLGLDEARVDVVTIGAPMLGDKRFIAATGRVLNQRNLVYVGDGAGGSYDQYRVGDPIVQYTCGPYMGCEALGTGPTGARWSYARNLVQVPFTARDLSPNTERWYEAEN-EMAIPSGRSIAATHFCSYMCFLSKGTEDELSLCYFRDQ 450
            W +++ Y ++Y   + +  K          R++P AVSM++  G+RM+++ RGT+W EEW +DFQY++A D     +FP G  HEG + VF   +K L +EV   +P H+++ GHSLG   A M G  L+  L   + RVDV+  G P  GD  F     R +N R+L+++G G+  + + Y  GD   QYTC PY GC+ L TGP G  + Y R   QVPF   D+ PN + W +  N    IPS + + A+H CSY+C+ S    D  S CYF  +
Sbjct:  194 WDRERWYMVDYLKQTNINWKNIPH------RQSPIAVSMMK--GDRMMVVIRGTIWTEEWCKDFQYRWADD--EDGLFP-GRTHEGMYSVFVDFYKGLEEEVESRQPAHVLVTGHSLGAGIANMIGLRLENSL-QHKPRVDVIGFGGPNTGDTDFADIYRRTVNSRHLIFLGHGSSPNPNMYTAGDITAQYTCEPYPGCDVLATGPFGKTYKYVRPHNQVPFYPEDM-PNPKTWNDIANVRRIIPSTKRVIASHICSYICWTSLAVGDLDSRCYFASE 458

The following BLAST results are available for this feature:

BLAST of NO30G00370.1 vs.

BLAST of NO30G00370.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM27512.1	9.300e-49	38.49	lipase class 3 [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO30G00370	NO30G00370	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO30G00370.1	NO30G00370.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO30G00370.1.cds1	NO30G00370.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO30G00370.1.cds2	NO30G00370.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO30G00370.1.cds3	NO30G00370.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO30G00370.1.cds4	NO30G00370.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO30G00370.1.cds5	NO30G00370.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO30G00370.1.cds6	NO30G00370.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO30G00370.1.cds7	NO30G00370.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO30G00370.1.cds8	NO30G00370.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO30G00370.1.cds9	NO30G00370.1.cds9	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO30G00370.1.cds10	NO30G00370.1.cds10	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO30G00370.1.cds11	NO30G00370.1.cds11	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO30G00370.1.cds12	NO30G00370.1.cds12	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr30:162098..165812+
coding sequence from alignment at chr30:162098..165812+

mRNA sequence

>NO30G00370.1 ID=NO30G00370.1|Name=NO30G00370.1|organism=Nannochloropsis oceanica|type=mRNA|length=1963bp
CACAGGCGGCCATGCCGCGCCCACCCCTGCGACGGGGCAACGCAGCTTCT
CTATTACTACTGCTGAGCTCACTGGTGTTAGCTCTGGGTTTTGTGCCCGT
GGAGCAAAGCCAACGACAAGAGCAAGTTGAGCTCGACGAGAAGGGCGTCC
GACGATCCCTTCGACGCAACATCCCCGACTTGCCTACCTCTTCTCAAAGC
CAACAACAACCAGTAGCAGCCCAGCCTCAACCCCCTCATCGTTCCCTCCA
ACAGGAGGGAGAGAAGGAGGACGAGTGGGAGGAAGGGAAAATGGGCACAG
CCGCCGCATTGGTGGAGGGCGCGTTCAGCACTCTTGTGCTTAGTCCGGAG
GATCCATGGATTGGGGATAAGGACGTATGGAGATAGGGGGGCAGGGAGGG
ATGAAGGGAGGGAGGTACGGGCGGGAGAAGATCGTTTTGTTCGTGCTACT
ACCGCCCAAGACCCAAAGCACGAGTTACTCATACGTGTTCCTTCACTCCT
TCCCTCATTCCTTCCCTCCCTTCCTCCTTTCCTCCCTCCCTCTGTAGACC
TATATGGCGGCTTTACGTGCGGCAATTCTGAATTTCAACGCCTCCTCGGC
CGCTAGCACCAACAACGACAACCACGACCCCTTCTACCCTGCATGCCCCC
TTTACGACGCCGCCAACGCCCGGGGCTCTCGGAGTGGCTGCAGCTTCCTC
CGACTTATGAAGACCATCCTCGTGGCTGCACCCGCCGACCTCTCCCACCC
CCTGGCCGACACTCTCCCTCCCTCTCCCTTCCCTCCCAACTACGCCTTGA
AGGAAGAGAGAGAGACGTATCACTTCCTCTACCGTCTCATCATCCGTCTC
TACAAATACACCTACGAGGTGGAGAGAGAAAGGGAGGGAGGGAGGGAGGG
AGGGGAGGGTGTAGGAGGTGCAGTGCTCGAGGACCCCATCACAGGGAAAC
GGGAGGGAGGAAGGGAGGGAGAGAGAGAGGGAGGGCAGGGAGGGGGGACG
GCACAGGCGCGGGCGTTGTTCGAGGATACGATTAAGGGAGGGAAGGAGGG
AGGGAAGGAGGGAGGGAGCTGGGGACAACAGAAGGTGTACTGGTTGAACT
ATCCTCTGATCAGTCCCGTCACGCACAAGGAGAGCGGGAGGGTGGGGGGG
AGGGAGGGAAGGAGAACGCCCTTCGCGGTCAGTATGGTGGAAGGAGGCGG
AGAGCGGATGCTGATTATTTTTAGGGGCACGGTGTGGCGGGAGGAGTGGA
ACCGCGACTTCCAGTACAAGTACGCCACCGACCCTCTGGCTGCCGAGGTC
TTCCCCGAGGGCCACGTGCACGAGGGATGCTTCGACGTCTTTAAGATGCT
CCATAAAGAGCTGGCCGATGAGGTCCGGAGGGTCCGTCCCAAGCACATCA
TGATCGGCGGACATTCTCTGGGAGGTACCCAAGCCATCATGCACGGCTTC
CACCTGCAGCAACTCCTCGGCTTGGACGAGGCGCGGGTTGACGTCGTCAC
CATCGGTGCTCCCATGCTGGGCGACAAGCGCTTTATCGCCGCCACTGGCC
GTGTGCTGAATCAGCGCAACCTCGTCTACGTCGGTGATGGGGCGGGAGGC
TCCTACGACCAGTACCGCGTGGGTGATCCCATCGTTCAGTACACCTGTGG
ACCCTACATGGGCTGTGAGGCTCTCGGAACAGGCCCCACCGGTGCCCGAT
GGAGCTACGCTCGAAACCTCGTCCAGGTCCCCTTCACGGCCCGCGACCTT
TCGCCCAACACCGAACGCTGGTACGAGGCCGAAAACGAGATGGCCATCCC
CTCGGGTCGGAGCATCGCCGCCACTCACTTCTGCTCTTACATGTGCTTCC
TCTCCAAGGGCACCGAGGACGAACTGTCTCTCTGTTATTTCCGCGACCAA
ACGGAGGCGCTGGGCTTGGCCAAAGGCACGCGGCTCTGCTACTTTCCCGA
GATTCCTCTGTAG

protein sequence of NO30G00370.1

>NO30G00370.1-protein ID=NO30G00370.1-protein|Name=NO30G00370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=470bp
MAALRAAILNFNASSAASTNNDNHDPFYPACPLYDAANARGSRSGCSFLR
LMKTILVAAPADLSHPLADTLPPSPFPPNYALKEERETYHFLYRLIIRLY
KYTYEVEREREGGREGGEGVGGAVLEDPITGKREGGREGEREGGQGGGTA
QARALFEDTIKGGKEGGKEGGSWGQQKVYWLNYPLISPVTHKESGRVGGR
EGRRTPFAVSMVEGGGERMLIIFRGTVWREEWNRDFQYKYATDPLAAEVF
PEGHVHEGCFDVFKMLHKELADEVRRVRPKHIMIGGHSLGGTQAIMHGFH
LQQLLGLDEARVDVVTIGAPMLGDKRFIAATGRVLNQRNLVYVGDGAGGS
YDQYRVGDPIVQYTCGPYMGCEALGTGPTGARWSYARNLVQVPFTARDLS
PNTERWYEAENEMAIPSGRSIAATHFCSYMCFLSKGTEDELSLCYFRDQT
EALGLAKGTRLCYFPEIPL*

mRNA from alignment at chr30:162098..165812+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO30G00370.1 ID=NO30G00370.1|Name=NO30G00370.1|organism=Nannochloropsis oceanica|type=mRNA|length=3715bp|location=Sequence derived from alignment at chr30:162098..165812+ (Nannochloropsis oceanica)
CACAGGCGGCCATGCCGCGCCCACCCCTGCGACGGGGCAACGCAGCTTCT
CTATTACTACTGCTGAGCTCACTGGTGTTAGCTCTGGGTTTTGTGCCCGT
GGAGCAAAGCCAACGACAAGAGCAAGTTGAGCTCGACGAGAAGGGCGTCC
GACGATGTAAGTAGTAGAGTAGGAAGGGGAAAGACGTTGAAATGGATTCA
GTGACAAAATACCAGTTAAAATAATTAATCTTACAGGCCCGTGTCCTGGT
ATTATAGGGTGCATTTTCCCCTTCCCTCCGATCCTCCCCCTAACAACCCC
CCCCCCTTTCCCACGTGTATTTACCCCGGTGCCCTTCCTTCCTCTTCACG
GTCTTATTTATTAATGCACTTGCACTGAACCCAACCCCTCCGTTCAACAG
CCCTTCGACGCAACATCCCCGACTTGCCTACCTCTTCTCAAAGCCAACAA
CAACCAGTAGCAGCCCAGCCTCAACCCCCTCATCGTTCCCTCCAACAGGA
GGGAGAGAAGGAGGACGAGTGGGAGGAAGGGAAAATGGGCACAGCCGCCG
CATTGGTGGAGGGCGCGTTCAGCACTCTTGTGCTTAGTCCGGAGGATCCA
TGGATTGGGGATAAGGACGTATGGAGATAGGGGGGCAGGGAGGGATGAAG
GGAGGGAGGTACGGGCGGGAGAAGATCGTTTTGTTCGTGCTACTACCGCC
CAAGACCCAAAGCACGAGTTACTCATACGTGTTCCTTCACTCCTTCCCTC
ATTCCTTCCCTCCCTTCCTCCTTTCCTCCCTCCCTCTGTAGACCTATATG
GCGGCTTTACGTGCGGCAATTCTGAATTTCAACGCCTCCTCGGCCGCTAG
CACCAACAACGACAACCACGAGTTAGTCCCTCCCCCTCTCTTTCCTTCCT
TGTCTTTCCCGTGACTTTTCTGGCACTTGGAAGCCCAACACCTGCATCTT
TTCTCTCTTACACCTCCTCCCTCATTCCCTCCCTTCCTTCCTCCCTCCCC
CTCACCTCAGCCCCTTCTACCCTGCATGCCCCCTTTACGACGCCGCCAAC
GCCCGGGGCTCTCGGAGTGGCTGCAGCTTCCTCCGACTTATGAAGGTTCG
CCTTTCCTCGCCCTCCTTCCCTCCCTCCATTGCTTTGTTCCCTTTCCCCG
ACTTCCCTCCCCATCACATGTCCGCCCCAAGCCCGTCGTCATTCTGAATC
CCCTTCTCCCTGCCTCCACCCCCAACTCCCACACTGATCCTACCCCCACC
CCTCCCTCCCTCCCTCCCGCCCTCCCTCCCTCTTCTTAGACCATCCTCGT
GGCTGCACCCGCCGACCTCTCCCACCCCCTGGCCGACACTCTCCCTCCCT
CTCCCTTCCCTCCCAACTACGTGCCCCCCCCCCTCCGCTTCGACACGCGC
CCCTCCTCCTCCACCCCCCCCCTTTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCCGCATGCTCGAGCATCAGGCCTTGAAGGAAGAGAGAGAGACGTA
TCACTTCCTCTACCGTCTCATCATCCGTCTCTACAAATACACCTACGAGG
TGGAGAGAGAAAGGGAGGGAGGGAGGGAGGGAGGGGAGGGTGTAGGAGGT
GCAGTGCTCGAGGACCCCATCACAGGGAAACGGGAGGGAGGAAGGGAGGG
AGAGAGAGAGGGAGGGCAGGGAGGGGGGACGGCACAGGCGCGGGCGTTGT
TCGAGGATACGATTAAGGGAGGGAAGGAGGGAGGGAAGGAGGGAGGGAGC
TGGGGACAACAGAAGGTGTACTGGTTGAACTATCCTCTGATCAGTCCCGT
CACGCACAAGGAGAGCGGGAGGGTGGGGGGGAGGGAGGGAAGGAGAACGC
CCTTCGCGGTCAGTATGGTGGAAGGAGGCGGAGAGCGGATGCTGATTATT
TTTAGGGGTAGGGAGGGAGGGAGGGAGGAAGCGCGGGAGGGAGGAAGGAG
GAAAATAGAGTATGTCCGTTGCTCATCCACATCATCGCGATGGGCCCTCC
CTCCCTCCGTCCCTCTTTCCCTCCCCCCCCCCCCTTTCGGGCCAGGCACG
GTGTGGCGGGAGGAGTGGAACCGCGACTTCCAGTACAAGTACGCCACCGA
CCCTCTGGCTGCCGAGGTGAGGGAGGGAGGGAGGGAGGGAGAGAGGGAGA
GGAGGGGAGGAAGCTCGACCGGAAGGTCCGGTCTCTGGGTGGAAGGTCCG
CTCTCTAACCCCTCCCTCCCTCCCTCCCTCCCTCCCCTCTGGCCTTCAGG
TCTTCCCCGAGGGCCACGTGCACGAGGGATGCTTCGACGTCTTTAAGATG
CTCCATAAAGAGCTGGCCGATGAGGTCCGGAGGGTCCGTCCCAAGCACAT
CATGATCGGTGCGTAGCCCCTCCCTTCCTCCCTTCCTCCCCTCCTTCCCC
CCTTCCTTCCTTCCTATCCCTCCCTAGATGGACATTCTGCACGGCTTTCA
TAGTGGACTCCACCTCTTCCTCCCTCCCTCCCTCCCTCCCTCCTTCCCTC
CCGCCCTTCCCAGGCGGACATTCTCTGGGAGGTACCCAAGCCATCATGCA
CGGCTTCCACCTGCAGCAACTCCTCGGCTTGGACGAGGCGCGGGTTGACG
TCGTCACCATCGGTATGCTTTGCGCCTCATTCCTTCCCTCCTTCCCTCCT
TCCCTCCTTCCCTCCCTCCCCCCCCTCCTCCATTCCATAGTCGCGGCATC
AAAGCCTCACCCCCTCCCTTTCTCTCCCCCTCCCTCCCTCCCTCCCTCCC
TCCAGGTGCTCCCATGCTGGGCGACAAGCGCTTTATCGCCGCCACTGGCC
GTGTGCTGAATCAGCGCAACCTCGTCTACGTCGGTGATGGGGCGGGAGGC
TCCTACGACCAGTACCGCGTGGGTGATCCCATCGTTCAGGTATGTCCCCG
CCTTCCCTCCCTATCCTTCCCTCCTCATCCTTTCCAACAGTGGCCATCAA
TGCCCGCCCTTCCCTCCTTCCCTTCTTGGTTTCCCCCTATCCCTCACACA
CCCTGCCATCCCCTCCAACTCCTCACCTCCTCCCCTCCCTCCTCCCCTCC
CTCCCTCCCCAGTACACCTGTGGACCCTACATGGGCTGTGAGGCTCTCGG
AACAGGCCCCACCGGTGCCCGATGGAGCTACGCTCGAAACCTCGTCCAGG
TACCTCCCTCCCTCCTTCCCTCCCTCCCTCCCTTCCCTTTCTTCCCTCTA
ACCTCCCCTTACCCTCCCTCCCTCCCTCCCTCCCTCCTTGCCATGCATCA
ACACTCAGGTCCCCTTCACGGCCCGCGACCTTTCGCCCAACACCGAACGC
TGGTACGTGTCCTCCCTCCCTCCCTCCCTCCCACAGCAACGAGCCCAAAC
TCGAGTCTCTTGCCAGCATGTTGACCTCCCCCACGGTCATGCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCAGGTACGAGGCCGAAAACGAGATGG
CCATCCCCTCGGGTCGGAGCATCGCCGCCACTCACTTCTGCTCTTACATG
TGCTTCCTCTCCAAGGGCACCGAGGACGGTACATCTTCCCTCCCTCCCTC
CCTCCCTCCCTCCTCCCCTCCCTCCACACTCAGTCTCGTCATTTATCCTC
CCTCCCTCCCTCCCTCCCCTCAGAACTGTCTCTCTGTTATTTCCGCGACC
AAACGGAGGCGCTGGGCTTGGCCAAAGGCACGCGGCTCTGCTACTTTCCC
GAGATTCCTCTGTAG

Coding sequence (CDS) from alignment at chr30:162098..165812+

>NO30G00370.1 ID=NO30G00370.1|Name=NO30G00370.1|organism=Nannochloropsis oceanica|type=CDS|length=1410bp|location=Sequence derived from alignment at chr30:162098..165812+ (Nannochloropsis oceanica)
ATGGCGGCTTTACGTGCGGCAATTCTGAATTTCAACGCCTCCTCGGCCGC
TAGCACCAACAACGACAACCACGACCCCTTCTACCCTGCATGCCCCCTTT
ACGACGCCGCCAACGCCCGGGGCTCTCGGAGTGGCTGCAGCTTCCTCCGA
CTTATGAAGACCATCCTCGTGGCTGCACCCGCCGACCTCTCCCACCCCCT
GGCCGACACTCTCCCTCCCTCTCCCTTCCCTCCCAACTACGCCTTGAAGG
AAGAGAGAGAGACGTATCACTTCCTCTACCGTCTCATCATCCGTCTCTAC
AAATACACCTACGAGGTGGAGAGAGAAAGGGAGGGAGGGAGGGAGGGAGG
GGAGGGTGTAGGAGGTGCAGTGCTCGAGGACCCCATCACAGGGAAACGGG
AGGGAGGAAGGGAGGGAGAGAGAGAGGGAGGGCAGGGAGGGGGGACGGCA
CAGGCGCGGGCGTTGTTCGAGGATACGATTAAGGGAGGGAAGGAGGGAGG
GAAGGAGGGAGGGAGCTGGGGACAACAGAAGGTGTACTGGTTGAACTATC
CTCTGATCAGTCCCGTCACGCACAAGGAGAGCGGGAGGGTGGGGGGGAGG
GAGGGAAGGAGAACGCCCTTCGCGGTCAGTATGGTGGAAGGAGGCGGAGA
GCGGATGCTGATTATTTTTAGGGGCACGGTGTGGCGGGAGGAGTGGAACC
GCGACTTCCAGTACAAGTACGCCACCGACCCTCTGGCTGCCGAGGTCTTC
CCCGAGGGCCACGTGCACGAGGGATGCTTCGACGTCTTTAAGATGCTCCA
TAAAGAGCTGGCCGATGAGGTCCGGAGGGTCCGTCCCAAGCACATCATGA
TCGGCGGACATTCTCTGGGAGGTACCCAAGCCATCATGCACGGCTTCCAC
CTGCAGCAACTCCTCGGCTTGGACGAGGCGCGGGTTGACGTCGTCACCAT
CGGTGCTCCCATGCTGGGCGACAAGCGCTTTATCGCCGCCACTGGCCGTG
TGCTGAATCAGCGCAACCTCGTCTACGTCGGTGATGGGGCGGGAGGCTCC
TACGACCAGTACCGCGTGGGTGATCCCATCGTTCAGTACACCTGTGGACC
CTACATGGGCTGTGAGGCTCTCGGAACAGGCCCCACCGGTGCCCGATGGA
GCTACGCTCGAAACCTCGTCCAGGTCCCCTTCACGGCCCGCGACCTTTCG
CCCAACACCGAACGCTGGTACGAGGCCGAAAACGAGATGGCCATCCCCTC
GGGTCGGAGCATCGCCGCCACTCACTTCTGCTCTTACATGTGCTTCCTCT
CCAAGGGCACCGAGGACGAACTGTCTCTCTGTTATTTCCGCGACCAAACG
GAGGCGCTGGGCTTGGCCAAAGGCACGCGGCTCTGCTACTTTCCCGAGAT
TCCTCTGTAG

Synonyms

Publications