NO30G00320.1, NO30G00320.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO30G00320.1
Unique NameNO30G00320.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length755
Alignment locationchr30:130570..132314 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:130570..132314 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO30G00320.1 vs.
Match: CBJ33423.1 (hypothetical protein Esi_0479_0012 [Ectocarpus siliculosus])

HSP 1 Score: 107.8 bits (268), Expect = 3.600e-20
Identity = 65/129 (50.39%), Postives = 91/129 (70.54%), Query Frame = 0 
Query:   36 KGRSVSGRFWRSGNNKRASTLITKTNPKTLSTSWEQKLAIRERAKAVKERQQEMRDERRADIDKKKLEREERLKRRMENEFKTSTYQMITKTEKIKAMSKKQLRQIKKTQMN-RMGQVELVSPWQDPRK 164
            KGR VSGR W++ N  + +++   T  +TLS+SW +KL I+ + +A+   ++EMRD +  +I+ KK E+ ER KRR +NE K +TYQ I+KT K+K MSKKQLRQIKK Q+N R G+VE VSPW   +K
Sbjct:  135 KGRCVSGRDWKARNQSQRASMQRTTATETLSSSWAKKLEIKAKRQAIMAMEKEMRDAKLQEIEDKKQEKLEREKRRQQNEMKNTTYQTISKTHKMKTMSKKQLRQIKKRQINSRTGEVEFVSPWGGGKK 263
The following BLAST results are available for this feature:
BLAST of NO30G00320.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ33423.13.600e-2050.39hypothetical protein Esi_0479_0012 [Ectocarpus sil... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO30G00320NO30G00320Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO30G00320.1NO30G00320.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO30G00320.1.cds1NO30G00320.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00320.1.cds2NO30G00320.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00320.1.cds3NO30G00320.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00320.1.cds4NO30G00320.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00320.1.cds5NO30G00320.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00320.1.cds6NO30G00320.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO30G00320.1 ID=NO30G00320.1|Name=NO30G00320.1|organism=Nannochloropsis oceanica|type=mRNA|length=755bp
ATGGTAGCGGCTCCCAAGCCTGCAGCAGCAGCAGCAGCAGCAGCAGCACC
AGTAACGGTAACACCATCAACAGCTTCAGCAGTAGTGGCAGGGAATGGCG
AGATTAAGGGTCGGTCGGTCAGTGGCCGGTTTTGGAGGAGTGGGAACAAC
AAACGAGCCTCCACCCTCATCACCAAGACCAACCCCAAAACTCTCTCGAC
CTCCTGGGAACAAAAACTGGCCATCCGAGAACGAGCCAAGGCCGTAAAGG
AGCGCCAGCAAGAGATGCGTGATGAACGAAGGGCAGATATCGATAAAAAG
AAGCTCGAGCGCGAGGAGCGGCTGAAGAGGAGGATGGAAAATGAGTTCAA
GACTAGCACGTACCAGATGATCACCAAGACCGAGAAGATTAAGGCCATGA
GCAAGAAGCAGCTTCGACAGATCAAGAAGACTCAGATGAACCGCATGGGC
CAAGTGGAGCTCGTTTCGCCGTGGCAAGATCCGCGGAAGGTCGGGAGGGA
CGGGAAGCCCGTGCCCAAGGAGTGGGTAAAACGAGGAGGAAAGAAGAAGC
TCTAAGCTACCTCGCACCCGCCCTTGCTCCCTGCTCGGGTGACGTGTGTG
CCCTTTCGTTCTTCCCTCCCTCCCTCCCTCCCTCGCCTGCCGAAAAAAGG
GGGGGAAGTCGAACTCCTACGTAAGAGAATGAGACGGCGGGAAGCACATG
TGAGAGCTAGAAGAAAGAAACGGAAAGCAAAGCAAAGAAAATTAAATTTA
AACGA
back to top

protein sequence of NO30G00320.1

>NO30G00320.1-protein ID=NO30G00320.1-protein|Name=NO30G00320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=185bp
MVAAPKPAAAAAAAAAPVTVTPSTASAVVAGNGEIKGRSVSGRFWRSGNN
KRASTLITKTNPKTLSTSWEQKLAIRERAKAVKERQQEMRDERRADIDKK
KLEREERLKRRMENEFKTSTYQMITKTEKIKAMSKKQLRQIKKTQMNRMG
QVELVSPWQDPRKVGRDGKPVPKEWVKRGGKKKL*
back to top

mRNA from alignment at chr30:130570..132314-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO30G00320.1 ID=NO30G00320.1|Name=NO30G00320.1|organism=Nannochloropsis oceanica|type=mRNA|length=1745bp|location=Sequence derived from alignment at chr30:130570..132314- (Nannochloropsis oceanica)
ATGGTAGCGGCTCCCAAGCCTGCAGCAGCAGCAGCAGCAGCAGCAGCACC
AGTAACGGTAACACCATCAACAGCTTCAGCAGTAGTGGCAGGGAATGGCG
AGATTAAGGGTCGGTCGGTCAGTGGCCGGTTTTGGAGGAGTGGGAACAAC
AAACGGTGCGTCTCGAGAGTTACCGGGAAGGAGTGGGAAGGATGCGTGCG
GTGGGAGAGAGATATATTTTTGTTAATTGGAATCGAGTTGAGTGAAAAGG
AGTGGGGAACAGAGAGCAAGAAAGGGGAGGAGAGAGGAAAGGAGACTAAG
TCTCAATGAAAAGGGAATGCAGGACTAATGATTGTGATGGCCTCACTCAT
CCCCTCCCTCCCTTCTCCCCTCCCTTCTCCCCTCCTTCCCTCCCTCCCTT
TCTTCCTTCAGAGCCTCCACCCTCATCACCAAGACCAACCCCAAAACTCT
CTCGACCTCCTGGGAACAAAAACTGGCCATCCGAGAACGAGCCAAGTTCG
TACCCTCCCTCCCTCCCTCCCTCCCTCAGTCCCTCCTTCCCTCCCTCTCT
TCTCTTTCCACCTCACCAATAGCTGATCCTCATGCTTAAACCTCTCCTTT
CTTTCCTTTCCCCCTCCCTCCAAGGGCCGTAAAGGAGCGCCAGCAAGAGA
TGCGTGATGAACGAAGGGCAGATATCGATGTATGTACCCCTTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCTCCCTGTCCCTTCCTTCACTTTCT
CCCTCCCTAAAACCCACTCACACTTCTCCCTCCATCTCTCCCTCCCTCCC
TCCCTCCCTTTCTTCCTCCCCTTCCTAAAGAAAAAGAAGCTCGAGCGCGA
GGAGCGGCTGAAGAGGAGGATGGAAAATGAGTTCAAGACTAGCACGTACC
AGATGGTGAGGGAGGAAGGGAGGAAGGGAGGGAGGAGGGAAGGGATGAAT
CGGGTCATCGTACTTTTTCTGTCGTTTGAGCGTAGATGAACAGGGAGGGA
GGGGAGAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGAGGGACCAATGAGCGGGAGGATGGAAAGCGTCTTAC
CAACACAAAGAAACACTCAATTTTAATCTTTTTCCCTCCCTCTCTCCCTT
CCTTAGATCACCAAGACCGAGAAGATTAAGGCCATGAGCAAGAAGCAGCT
TCGACAGATCAAGAAGACTCAGGTGAAGAAGGGAGGGAGGGAAGAGGAGA
GGGAAGAAAAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGCCGCTCAGGA
TAAAGAGGGGCCAAGAAATCAAGAAACAAGAGACGGAAAAAGAGGGGGGG
GAAATCGACTCACCTGCTTTCCCTTCCCTTCTTCTGTCCCTCCCTCCCTT
CCTCCCTCCCTCCCTCCCTCTGTAGATGAACCGCATGGGCCAAGTGGAGC
TCGTTTCGCCGTGGCAAGATCCGCGGAAGGTCGGGAGGGACGGGAAGCCC
GTGCCCAAGGAGTGGGTAAAACGAGGAGGAAAGAAGAAGCTCTAAGCTAC
CTCGCACCCGCCCTTGCTCCCTGCTCGGGTGACGTGTGTGCCCTTTCGTT
CTTCCCTCCCTCCCTCCCTCCCTCGCCTGCCGAAAAAAGGGGGGGAAGTC
GAACTCCTACGTAAGAGAATGAGACGGCGGGAAGCACATGTGAGAGCTAG
AAGAAAGAAACGGAAAGCAAAGCAAAGAAAATTAAATTTAAACGA
back to top

Coding sequence (CDS) from alignment at chr30:130570..132314-

>NO30G00320.1 ID=NO30G00320.1|Name=NO30G00320.1|organism=Nannochloropsis oceanica|type=CDS|length=555bp|location=Sequence derived from alignment at chr30:130570..132314- (Nannochloropsis oceanica)
ATGGTAGCGGCTCCCAAGCCTGCAGCAGCAGCAGCAGCAGCAGCAGCACC
AGTAACGGTAACACCATCAACAGCTTCAGCAGTAGTGGCAGGGAATGGCG
AGATTAAGGGTCGGTCGGTCAGTGGCCGGTTTTGGAGGAGTGGGAACAAC
AAACGAGCCTCCACCCTCATCACCAAGACCAACCCCAAAACTCTCTCGAC
CTCCTGGGAACAAAAACTGGCCATCCGAGAACGAGCCAAGGCCGTAAAGG
AGCGCCAGCAAGAGATGCGTGATGAACGAAGGGCAGATATCGATAAAAAG
AAGCTCGAGCGCGAGGAGCGGCTGAAGAGGAGGATGGAAAATGAGTTCAA
GACTAGCACGTACCAGATGATCACCAAGACCGAGAAGATTAAGGCCATGA
GCAAGAAGCAGCTTCGACAGATCAAGAAGACTCAGATGAACCGCATGGGC
CAAGTGGAGCTCGTTTCGCCGTGGCAAGATCCGCGGAAGGTCGGGAGGGA
CGGGAAGCCCGTGCCCAAGGAGTGGGTAAAACGAGGAGGAAAGAAGAAGC
TCTAA
back to top
Synonyms
Publications