Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr30 genome chr30:120914..125192 +
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO30G00300.2 vs.
Match: OAE20717.1 (hypothetical protein AXG93_154s1910 [Marchantia polymorpha subsp. ruderalis]; PTQ44685.1 hypothetical protein MARPO_0019s0103 [Marchantia polymorpha])
HSP 1 Score: 203.4 bits (516), Expect = 1.500e-48
Identity = 138/356 (38.76%), Postives = 198/356 (55.62%), Query Frame = 0
Query: 9 AGLPTILSSTFVCYVGAMRHRDVKKVMAANKRRGGAAAEETQAQNVVLSARSALLMPVAGSLLLCTFYFLFSHLQLLVLLYMLAASFASLFFVLAAPCGRM------LHPL-----CPRRRQQQGVVGAVAGGLLLAWLMTGHYVLNNALGACLCVSMISFLHLPNLRIAALCLGSLFIYDIFWVFFSASVFGSNVMVEVATKAALNPAASMGEALHLPLLKNAPASLQLPLKLLFPYY----PSGPHHDRLAYSMLGLGDMAIPGLFLSFLLSFDDFLKATISKPSTPPSLQPSSYSYFSTGLVGYVIGMCMALFCTRFFNIAQPVLLYLVPCMMGPVGMKAWRDSPHLSQLWSG 350
+ L I ++ FV A R + +K A++ R + A ++ L AL++P+A S L ++LFS L LV + AS +SL F LA M L+P+ C + QG++ V+ G++ AWL++GH+VLNN LG +C++ +S + LPN++I AL L LF+YDIFWVFFS FG+NVMV VAT+ A NP ++ +L+LP LK+ L LP+KLLFP + P GP+ + + MLGLGDMAIPG+ L+ +L FD P + S Y +++ GY G+ AL QP LLYLVP +GPV AW S L++LW+G
Sbjct: 14 SSLVLIATAVFVVLASAQRALNYEK--EADRHRDFSEA------SITLDTSQALMIPIASSCSLLLMFYLFSSLSQLVTAFTAIASASSLAFCLAPYATYMNSKVSPLNPIVSRCCCGPLSRTQGMLVVVSVGMVAAWLISGHWVLNNILGISICIAFVSHVRLPNIKICALLLACLFVYDIFWVFFSERFFGANVMVSVATQQASNPMHTVANSLNLPGLKSITKKLDLPVKLLFPRHLLGEPGGPNGE---FMMLGLGDMAIPGMLLALVLCFDHRKGRDFDMELAFPKVNGSKYIWYAAS--GYAAGLIAALAAGVLTRSPQPALLYLVPSTLGPVAFAAWTRS-ELNELWTG 355
The following BLAST results are available for this feature:
BLAST of NO30G00300.2 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
200 400 600 800 1000 1200 1400 1600 Expect = 1.50e-48 / Id = 38.76 Sequence OAE20717.1
Match Name E-value Identity Description
OAE20717.1 1.500e-48 38.76 hypothetical protein AXG93_154s1910 [Marchantia po... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO30G00300.2 ID=NO30G00300.2|Name=NO30G00300.2|organism=Nannochloropsis oceanica|type=mRNA|length=1786bp AACACGGAATCGAAGTTATCCAGGGCACAAGGACATATAGAAGGCACTTG GCTCGGTCGATGCCGTATATTACCGCACTGTGCATTTTTTTTGGGGGGAA ATAAAGAGGAGGAGGCAGCAGCAGGGCGGCGCAGACATCATGCTCGCAGC TGCCTCTCTCCTTTATCATCATGACCAGATCGTGACAGTAACAGCAGCAG CAGCAGCAGCAGCAGCAGCAAAATTCAACCTTGCTTTTGCATGTCCCCCC TGTAGGTCAAGCAGCTTGGCTCTTCGTCCACCGCCCTAGTAAATCTCTTT TCACCTGTCATCACCAGACAAGACCGCTGGCTCTGGCTTCACCTCGCCAA GCCTGCCCAATGGGGCGCCTCCCCAACTTAATTCCCTCCTCCTCCCTCCC ATCCCACACAGAATGGACTGGCCCTGGTTCATTTGGGCGGGTCTGCCTAC CATTCTATCTTCAACTTTCGTGTGTTATGTGGGTGCAATGCGTCATCGAG ATGTGAAGAAGGTGATGGCAGCCAACAAGAGGAGGGGAGGGGCAGCTGCA GAGGAGACACAGGCACAGAACGTGGTCCTGAGCGCACGGAGCGCCTTGCT GATGCCTGTTGCGGGCAGTCTGCTGTTGTGCACATTTTACTTTCTCTTCA GCCACCTGCAACTGCTGGTTCTCCTCTACATGCTCGCCGCCTCCTTCGCT TCCCTCTTCTTCGTCCTCGCCGCCCCCTGTGGCCGAATGCTTCACCCGCT ATGTCCACGTCGAAGGCAGCAGCAAGGCGTGGTGGGGGCAGTGGCCGGGG GCCTGCTCCTGGCTTGGCTCATGACAGGCCACTACGTCCTCAACAACGCC CTGGGGGCCTGTCTGTGCGTGTCCATGATCTCCTTCCTGCATCTGCCTAA CCTGAGGATCGCCGCCCTCTGCCTGGGCTCTCTCTTCATCTACGATATCT TCTGGGTGTTCTTCTCCGCCTCTGTCTTCGGGTCCAACGTCATGGTGGAG GTGGCCACGAAAGCCGCCCTCAATCCAGCGGCTTCAATGGGAGAAGCCCT CCACCTCCCCCTCCTCAAGAACGCCCCTGCTTCTCTGCAGCTCCCATTGA AGCTGCTCTTTCCTTACTACCCCTCCGGTCCCCACCACGACCGACTCGCC TATAGCATGTTGGGCCTAGGCGACATGGCCATTCCGGGCCTCTTCCTCTC CTTCCTTTTATCCTTCGACGATTTCCTCAAAGCCACCATCAGCAAGCCCT CCACCCCTCCCTCCCTCCAGCCCTCCTCCTACTCCTACTTCTCCACGGGC CTGGTCGGCTACGTCATTGGCATGTGCATGGCCCTCTTCTGTACACGCTT CTTCAACATAGCCCAACCCGTCCTCCTCTACCTCGTGCCTTGCATGATGG GCCCCGTGGGAATGAAGGCCTGGCGTGACTCCCCTCATCTCTCCCAGCTC TGGTCGGGTGAGTTCGACGCCAGCTCTGCCCTCCTTCCCTTCCTCCCTCC TGCCCTCGATTCCGGCCCTCAAGAAAATGGAAGCGACGGGCAGGAAGAGA AAGGGAGGGAGGGAGGGAGGGAGGGAGGGCGGGGGGGAGGGAGGAAGAGG ATATTTTCTTGGGGTGTTGGGACGGTGATGGGGGTGGAAGGAGGGCAGGA GGAGGGGGAAGGGAGGAAGGGGAAGAAGGAGGGAGGGATGGCGGGCGGGA GAGAGGGAGAGAAGGAGGGGTCAATGGTGCTGGTGCCCGAGACGGAGTGT GAGAGGGGGATGCTTCCGTTGGCATCGCTTGTGTGA back to top protein sequence of NO30G00300.2
>NO30G00300.2-protein ID=NO30G00300.2-protein|Name=NO30G00300.2|organism=Nannochloropsis oceanica|type=polypeptide|length=458bp MDWPWFIWAGLPTILSSTFVCYVGAMRHRDVKKVMAANKRRGGAAAEETQ AQNVVLSARSALLMPVAGSLLLCTFYFLFSHLQLLVLLYMLAASFASLFF VLAAPCGRMLHPLCPRRRQQQGVVGAVAGGLLLAWLMTGHYVLNNALGAC LCVSMISFLHLPNLRIAALCLGSLFIYDIFWVFFSASVFGSNVMVEVATK AALNPAASMGEALHLPLLKNAPASLQLPLKLLFPYYPSGPHHDRLAYSML GLGDMAIPGLFLSFLLSFDDFLKATISKPSTPPSLQPSSYSYFSTGLVGY VIGMCMALFCTRFFNIAQPVLLYLVPCMMGPVGMKAWRDSPHLSQLWSGE FDASSALLPFLPPALDSGPQENGSDGQEEKGREGGREGGRGGGRKRIFSW GVGTVMGVEGGQEEGEGRKGKKEGGMAGGREGEKEGSMVLVPETECERGM LPLASLV* back to top mRNA from alignment at chr30:120914..125192+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO30G00300.2 ID=NO30G00300.2|Name=NO30G00300.2|organism=Nannochloropsis oceanica|type=mRNA|length=4279bp|location=Sequence derived from alignment at chr30:120914..125192+ (Nannochloropsis oceanica) AACACGGAATCGAAGTTATCCAGGGCACAAGGACATATAGAAGGCACTTG
GCTCGGTCGATGCCGTATATTACCGCACTGTGCATTTTTTTTGGGGGGAA
ATAAAGAGGAGGAGGCAGCAGCAGGGCGGCGCAGACATCATGCTCGCAGC
TGCCTCTCTCCTTTATCATCATGACCAGATCGTGACAGTAACAGCAGCAG
CAGCAGCAGCAGCAGCAGCAAAATTCAACCTTGCTTTTGCATGTCCCCCC
TGTAGGTCAAGCAGCTTGGCTCTTCGTCCACCGCCCTAGTAAATCTCTTT
TCACCTGTCATCACCAGACAAGACCGCTGGCTCTGGCTTCACCTCGCCAA
GCCTGCCCAATGGGGCGCCTCCCCAACTTAATTCCCTCCTCCTCCCTCCC
ATCCCACACAGAATGGACTGGCCCTGGTTCATTTGGGCGGGTCTGCCTAC
CATTCTATCTTCAACTTTCGTGTGTTATGTGGGTGCAATGCGTCATCGAG
ATGTGAAGAAGGTGATGGCAGCCAACAAGAGGAGGGGAGGGGCAGCTGCA
GAGGAGACACAGGCACAGAACGTGGTCCTGAGCGCACGGAGCGCCTTGCT
GATGCCTGTTGCGGGCAGTCTGCTGTTGTGCACATTTTACTTTCTCTTCA
G GTACGACCCTCCCTCCTCCCTCCCTCTCTGTCACCCTCCCTGAGACTTT
CCTCTCGGGACGGAAGCAGGGAGCGGGGTGTGCTTACGCTCTTGCCCAGC
AGTCTCATTCTGTGCGTAAGTAATATTTGTATGTGATTGTAACGTGTGGG
TGTACATAATTGATTGTATAAATACATCGATTCATAAAGTGTACTTCCTT
TTCACAGGTGGAGAAAGAGGGGGCTTCAGTATCTTCGTCTGACTCACTCT
CCTTCTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCCTCCCTCCCTCCCTCCCT
CTGCAGCCACCTGCAACTGCTGGTTCTCCTCTACATGCTCGCCGCCTCCT
TCGCTTCCCTCTTCTTCGTCCTCGCCGCCCCCTGTGGCCGAATGCTTCAC
CCGCTATGTCCACGTCGAAGGCAGCAGCAAGGCGTGGTGGGGGCAGTGGC
CGGGGGCCTGCTCCTGGCTTGGCTCATGACAG GTTACGAGGGAGGGCGGG
AAGGAGGGCGGGAAGGATGGCGGGAAGGAGGGAGGGGTGCAGGCAGGTTT
CTTTTTGTTTCCAGATTTTTTTCATCATCAAATCGATCCTCCCTCCCTCC
CTCCCTTCCTCTCCTCCCTCCCTCCCTCCAGGCCACTACGTCCTCAACAA
CGCCCTGGGGGCCTGTCTGTGCGTGTCCATGATCTCCTTCCTGCATCTGC
CTAACCTGAGG GTAAGAAGCGAGGGAGAGAGGGAGGGAGGGAAGAAGAGA
GGGAGAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAGAAACGGTCAATGTCGTGCAGTACATTCCATCCATTGTTTGCTGATAC
CATCTCCCTCCCTCTCTTCCTCCATCCCTCCCTCCCTTCCTCCCTCCCAA
GATCGCCGCCCTCTGCCTGGGCTCTCTCTTCATCTACGATATCTTCTG GT
AAGCTCTCCCTCCCTCCCTCCCTCTCTTCCTCCCTCCCCACCCCTCTTTC
CCTCCTTCCCTCCCTCGCTCCTTTCCTTATCCGAAGAATTATCGTAATGA
CTCCCTCCCTCCCTCCCTCCCCCCTCCCTCCCTCCCTCCCTCCCCTCCCT
CCCTCCCTCCTCCCAGGGTGTTCTTCTCCGCCTCTGTCTTCGGGTCCAAC
GTCATGGTGGAG GTGACGAGGGAGGGAAGGAAGGAGACGACCCACCGAGG
CATGCCTCTCTCTCCACGTTTGGCTCATCCCTCCCTCCCTCCCTCCCTTC
CTCCCTCCCTCAGGTGGCCACGAAAGCCGCCCTCAATCCAGCGGCTTCAA
TGGGAGAAGCCCTCCACCTCCCCCTCCTCAAGAACGCCCCTGCTTCTCTG
CAG GTAGGCCCTCCCTCCCTCCCTCCCTTCCTTTCTCCCGCAGATCAGCC
TCACTGATCTTCCTTCCTTCCCTCCCTCTCTTCCTTCCTCTCTAACATGG
ACCCTCTCTGACCGTTCCCTCACTCCCTCCCTCCCTCTCTAGCTCCCATT
GAAGCTGCTCTTTCCTTACTACCCCTCCGGTCCCCACCACGACCGACTCG
CCTATAGCATGTTGGGCCTAG GTGCGTACGTAAGCCCCTCCCTCCCTCCC
TCCCTCCCCTCCTCCCTCCCATCCTCCCTCTTCTCTGTTCTGTCTTATGT
CGATCTTGATTATCATTTGGGCTCTGTCCTCTTTTCCTCCCTCCCTCCCT
CCCTCCCTTTCGCCCTCTTCCCCATTGCTGCTCTCCCCCCTCTACGTCTA
CTCTTCATTCAGTGTCACCCCCCTCCCTCCCTCCCTCCCTTCCTCCCTCC
CTCCCTCAGGCGACATGGCCATTCCGGGCCTCTTCCTCTCCTTCCTTTTA
TCCTTCGACGATTTCCTCAAAGCCACCATCAGCAAG GTAAGCCCTCCCTC
CCTCCCTCACTCCCTCCCTCCCTCCCTCCCGCCCTCCCTCCTCCCTCGTA
CATACACTGTTCACAATGCTCTGATCGCTCCCTCGGCCCTCCCTGCCTCC
CTCCCTCCCTCCATCCCTCCCTCTCCTTGCATCAACCTACCACCACCTCA
CCCTCTCACCCTGCCCTCCCTCCCTCCAGCCCTCCACCCCTCCCTCCCTC
CAGCCCTCCTCCTACTCCTACTTCTCCACGGGCCTGGTCGGCTACGTCAT
TGGCATGTGCATGGCCCTCTTCTGTACACG GTGCGTCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCAAATCTGTTTGTCTCCCACGTCCCCTCCTA
CCCCTCCCTCCCCCCTCCCTCCCTCCCTCCCTCCTCCCCCATGACGTTTG
TCTGCCCCGTCATCTCCCTCTTACCCCTCCCTCCTTCCCTCCGTCCCTCC
GTCCGTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CTCTCCCCCAGCTTCTTCAACATAGCCCAACCCGTCCTCCTCTACCTCGT
GCCTTGCATGATGGGCCCCGTGGGAATGAAG GCAAGCCCTTCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCATGCCTGCCTCCATCTTTCCCTCCCG
CTTTCTTCCTCTTCCTCCATCTCTTCCTTCCTTTCCCTTTCTCTCTCCCT
TTCTCCCTCTCTTCCTCCCCACCTCTCTGTCTCTCTCTCTCTGTCTCTGT
TTCTCTCTCTCTGTGTGTGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTGT
GTCTCTCTCTCACACACGTGACTAACCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTAGGCCTGGCGTGACTCCCCTCATCTCTCCCAGCTCTGGTCGG
GTGAGTTCGACGCCAGCTCTGCCCTCCTTCCCTTCCTCCCTCCTGCCCTC
GATTCCGGCCCTCAAGAAAATGGAAGCGACGGGCAGGAAGAGAAAGGGAG
GGAGGGAGGGAGGGAGGGAGGGCGGGGGGGAGGGAGGAAGAGGATATTTT
CTTGGGGTGTTGGGACGGTGATGGGGGTGGAAGGAGGGCAGGAGGAGGGG
GAAGGGAGGAAGGGGAAGAAGGAGGGAGGGATGGCGGGCGGGAGAGAGGG
AGAGAAGGAGGGGTCAATGGTGCTGGTGCCCGAGACGGAGTGTGAGAGGG
GGATGCTTCCGTTGGCATCGCTTGTGTGA back to top Coding sequence (CDS) from alignment at chr30:120914..125192+
>NO30G00300.2 ID=NO30G00300.2|Name=NO30G00300.2|organism=Nannochloropsis oceanica|type=CDS|length=1374bp|location=Sequence derived from alignment at chr30:120914..125192+ (Nannochloropsis oceanica) ATGGACTGGCCCTGGTTCATTTGGGCGGGTCTGCCTACCATTCTATCTTC AACTTTCGTGTGTTATGTGGGTGCAATGCGTCATCGAGATGTGAAGAAGG TGATGGCAGCCAACAAGAGGAGGGGAGGGGCAGCTGCAGAGGAGACACAG GCACAGAACGTGGTCCTGAGCGCACGGAGCGCCTTGCTGATGCCTGTTGC GGGCAGTCTGCTGTTGTGCACATTTTACTTTCTCTTCAGCCACCTGCAAC TGCTGGTTCTCCTCTACATGCTCGCCGCCTCCTTCGCTTCCCTCTTCTTC GTCCTCGCCGCCCCCTGTGGCCGAATGCTTCACCCGCTATGTCCACGTCG AAGGCAGCAGCAAGGCGTGGTGGGGGCAGTGGCCGGGGGCCTGCTCCTGG CTTGGCTCATGACAGGCCACTACGTCCTCAACAACGCCCTGGGGGCCTGT CTGTGCGTGTCCATGATCTCCTTCCTGCATCTGCCTAACCTGAGGATCGC CGCCCTCTGCCTGGGCTCTCTCTTCATCTACGATATCTTCTGGGTGTTCT TCTCCGCCTCTGTCTTCGGGTCCAACGTCATGGTGGAGGTGGCCACGAAA GCCGCCCTCAATCCAGCGGCTTCAATGGGAGAAGCCCTCCACCTCCCCCT CCTCAAGAACGCCCCTGCTTCTCTGCAGCTCCCATTGAAGCTGCTCTTTC CTTACTACCCCTCCGGTCCCCACCACGACCGACTCGCCTATAGCATGTTG GGCCTAGGCGACATGGCCATTCCGGGCCTCTTCCTCTCCTTCCTTTTATC CTTCGACGATTTCCTCAAAGCCACCATCAGCAAGCCCTCCACCCCTCCCT CCCTCCAGCCCTCCTCCTACTCCTACTTCTCCACGGGCCTGGTCGGCTAC GTCATTGGCATGTGCATGGCCCTCTTCTGTACACGCTTCTTCAACATAGC CCAACCCGTCCTCCTCTACCTCGTGCCTTGCATGATGGGCCCCGTGGGAA TGAAGGCCTGGCGTGACTCCCCTCATCTCTCCCAGCTCTGGTCGGGTGAG TTCGACGCCAGCTCTGCCCTCCTTCCCTTCCTCCCTCCTGCCCTCGATTC CGGCCCTCAAGAAAATGGAAGCGACGGGCAGGAAGAGAAAGGGAGGGAGG GAGGGAGGGAGGGAGGGCGGGGGGGAGGGAGGAAGAGGATATTTTCTTGG GGTGTTGGGACGGTGATGGGGGTGGAAGGAGGGCAGGAGGAGGGGGAAGG GAGGAAGGGGAAGAAGGAGGGAGGGATGGCGGGCGGGAGAGAGGGAGAGA AGGAGGGGTCAATGGTGCTGGTGCCCGAGACGGAGTGTGAGAGGGGGATG CTTCCGTTGGCATCGCTTGTGTGA back to top