NO30G00280.1, NO30G00280.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO30G00280.1
Unique NameNO30G00280.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1440
Alignment locationchr30:116205..118798 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:116205..118798 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO30G00280.1 vs.
Match: EWM23721.1 (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 92.8 bits (229), Expect = 3.100e-15
Identity = 63/178 (35.39%), Postives = 87/178 (48.88%), Query Frame = 0 
Query:  301 RRATKEDLSGLTAEEKVERRKIRARMYNRLSRYRCNRLHGDLHKDVSRMEMYKNIVEDAPDMICVISPDIQSQVLYINKTARCILHAEPAQLVGSSFWNIVHPEDKMALFRALTAVSAFTSVGKVERLRCRVVTDN----------------PGIYVSVRMTLANGMQGIVCVMCHED 463
            +RA + DLSG T  EK ERRK RARMY+   R R N     L + V  + +YK +V++AP++  V+S D Q++VLY N          P   VG S W +VH EDK  +  A    SA     +V R RCR+ T                      V V +++  G QG++ V+  ED
Sbjct:  278 KRARRTDLSGYTPGEKQERRKERARMYSAQVRERQNAELHALRQQVQALSVYKLMVDEAPEIFAVLSADSQAKVLYANAAFARFFLCHPESCVGRSVWEVVHREDKETVMGAF--ASAVMEKEEVGRARCRLGTSKGQGSKEAGGAGREVPVAVSEVPVAVSVRRGTQGLILVIRRED 453
The following BLAST results are available for this feature:
BLAST of NO30G00280.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
200400600800100012001400SequenceEWM23721.1
Match NameE-valueIdentityDescription
EWM23721.13.100e-1535.39conserved unknown protein [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO30G00280NO30G00280Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO30G00280.1NO30G00280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO30G00280.1.cds1NO30G00280.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00280.1.cds2NO30G00280.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00280.1.cds3NO30G00280.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00280.1.cds4NO30G00280.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00280.1.cds5NO30G00280.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO30G00280.1 ID=NO30G00280.1|Name=NO30G00280.1|organism=Nannochloropsis oceanica|type=mRNA|length=1440bp
ATGGAGATGATCTGGTCCGTGAGCCCTCTGGGAGAATACGTGGGAATCCA
GGTGGCCGGGAACGGCCAGACCTCGCTCTCCATCGGCGTCATTTCCGGCA
AGCCCCGGATGGTGGACACGCCCTACCACCAAGTCATGCTCCTCTCGGAC
TCTATCCGGGCTTCTGCTGGCCCAATGACATTCGCTTATACGTGTTCGTA
TTCTCGAGAGGATATCGGGGCTTTTGGCCCCACTGCTGAGCTGCGGCGGG
ACCAAAGCCAGCGCGACTGCCTCCACGGAATGAAGGATTCTGTCGACTTA
GACGAGAAAAAGGCACACGGCGGCGCGGCAGCCCTGTGCAGCCTAGCAAC
ACTCTCTGCCGCTGCTGACCCGCTTCTCGTCTCCACGCCGTGTTACCCCT
CGTCTTGGGCCTCTTCTCTCGTAGCAGCGAACCACGAACTTCAGAAGCAG
ATGGTCGACAAATCATTGCAATCCTTTCTGACCCAGTACCAGCAACAGTT
TCACCCGTCGGCCATTCATCAGCATGCTATCCTGGATGATAAGATGACCA
AGGTACTCTCCCAGGCCTCGCCGTCTTTTCTAGCACAGCAGCACCACCAG
CTCCAGCAGTATTTCAACCGAAGTCACCTACCACTGCAGCTTCATTACTT
CCTAAAATGCCAAATGCAGCCAATTGAAAAGCAGCATATGATGGCGTCGA
CCAAGTGCTTTTCTATGAACGAGTTACCGCTCACCACCGAGCACGTGGAA
GCCAAGATCTACCCACCGATTGCACCGCTGAGCGAGACCCCTCTGCTGCT
GCAGGAGATTCGAGCTGGTGTGATGGGTGTTTCGGTGGGACGGCTGCCTG
GCAGATACTCCAAGATCATGGGAAAGTACCTTCCGAGCACAGAGAAGCAG
CGACGAGCAACGAAAGAGGACTTGTCGGGATTAACGGCAGAGGAGAAGGT
GGAGCGACGCAAGATTCGCGCACGCATGTACAATCGCTTGTCTCGCTACC
GGTGCAACCGGTTGCATGGTGACCTGCACAAGGACGTGAGTCGCATGGAA
ATGTACAAGAATATTGTTGAAGATGCGCCGGACATGATATGTGTCATCTC
CCCCGACATTCAGAGCCAGGTGCTGTACATCAACAAGACCGCTCGATGCA
TCCTTCACGCTGAGCCCGCGCAGCTGGTGGGGTCCAGCTTCTGGAATATT
GTCCACCCGGAAGATAAGATGGCGCTGTTCAGGGCACTCACTGCCGTCTC
CGCCTTCACGTCGGTCGGGAAAGTGGAACGGCTACGCTGTCGTGTTGTCA
CCGACAACCCCGGTATCTATGTATCTGTCCGGATGACGCTCGCGAACGGG
ATGCAGGGCATTGTCTGCGTAATGTGCCACGAAGACCCTCTGTCTACCGT
TTCGCGCGTGTCGCCTGATGGACGAGCGTGTCTTATGTAG
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protein sequence of NO30G00280.1

>NO30G00280.1-protein ID=NO30G00280.1-protein|Name=NO30G00280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=480bp
MEMIWSVSPLGEYVGIQVAGNGQTSLSIGVISGKPRMVDTPYHQVMLLSD
SIRASAGPMTFAYTCSYSREDIGAFGPTAELRRDQSQRDCLHGMKDSVDL
DEKKAHGGAAALCSLATLSAAADPLLVSTPCYPSSWASSLVAANHELQKQ
MVDKSLQSFLTQYQQQFHPSAIHQHAILDDKMTKVLSQASPSFLAQQHHQ
LQQYFNRSHLPLQLHYFLKCQMQPIEKQHMMASTKCFSMNELPLTTEHVE
AKIYPPIAPLSETPLLLQEIRAGVMGVSVGRLPGRYSKIMGKYLPSTEKQ
RRATKEDLSGLTAEEKVERRKIRARMYNRLSRYRCNRLHGDLHKDVSRME
MYKNIVEDAPDMICVISPDIQSQVLYINKTARCILHAEPAQLVGSSFWNI
VHPEDKMALFRALTAVSAFTSVGKVERLRCRVVTDNPGIYVSVRMTLANG
MQGIVCVMCHEDPLSTVSRVSPDGRACLM*
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mRNA from alignment at chr30:116205..118798+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO30G00280.1 ID=NO30G00280.1|Name=NO30G00280.1|organism=Nannochloropsis oceanica|type=mRNA|length=2594bp|location=Sequence derived from alignment at chr30:116205..118798+ (Nannochloropsis oceanica)
ATGGAGATGATCTGGTCCGTGAGCCCTCTGGGAGAATACGTGGGAATCCA
GGTAGCTTCCCCCCCTTCCCTCCCTCCTGCCCTCCCTCCCTCCCTTCCTC
AATCAATTTTCCCCCGCAGTCATATTGAGCGAGAGAGATGGATAAGGCCC
GCTTCCTGGCCGCCATGTCTCACCCTTTTTCCCACCCTTCCTCCCTCTCT
CCCTCCCTCCCTCTTTCCCTCGTTCCCCAGGTGGCCGGGAACGGCCAGAC
CTCGCTCTCCATCGGCGTCATTTCCGGCAAGCCCCGGATGGTGGACACGC
CCTACCACCAAGTCATGCTCCTCTCGGACGTAAAATGTGTGCCTGCTGTG
CCGCCCCCCTCCTTCTCTTTATCCCTCCATCTCTCCCTCTCTGTCTTTGA
GTCCTCGTAAGGGCTTCACGCGTCTATTTCAATAATAGATTACGTCATCC
ATCGCACAATGTCGGCCTTTGATTCCGACAAAAAAGAGATAAATCGGAGC
ACTCTCCATTCCCTGGAGATATTTACCGAGCAAACAGCAGGCCCTCAGCT
AGCAGCAGGCCATCACGGTGTACAATCCGGCGCAGCAGATTGATTTCCTT
GCTGCCACATGTTTTTGCTTGCTTTCGCTGTGCACGTATGGCTGGCTGGC
TGACCACAGACAGACAGGAGCACCACGTGTGTCCATATGTCGTGCCTGCA
CTCCGCCGCCGCCGCCCGCTTTCTGTCATTAGCCCTCTTAGAACCATCTC
CCAGCTCCCAACTCAAATCCAACTGCCCATACATGCAGTGTCACAAATCA
CAGTCTATCCGGGCTTCTGCTGGCCCAATGACATTCGCTTATACGTGTTC
GTATTCTCGAGAGGATATCGGGGCTTTTGGCCCCACTGCTGAGCTGCGGC
GGGACCAAAGCCAGCGCGACTGCCTCCACGGAATGAAGGATTCTGTCGAC
TTAGACGAGAAAAAGGCACACGGCGGCGCGGCAGCCCTGTGCAGCCTAGC
AACACTCTCTGCCGCTGCTGACCCGCTTCTCGTCTCCACGCCGTGTTACC
CCTCGTCTTGGGCCTCTTCTCTCGTAGCAGCGAACCACGGTACGTTTTTG
GAAGGCGATTGGTGCCCATTATTCCCCAAGTTGCCTCCTCTATGCCTCTA
TGTATACATTTTCCTGATCAACTACATACATCATCCCCCGACTTGTACGT
GGCCTTGTACATGGAAGCGTACGTGTACGACACACTCCGCATGATGTTTC
TTTTTCATCTTTTCATTTTTCATCTTCCCGTCGCCATTATGTGTTTGGCC
ACCAGCATTCTGACAAATGCTTCTACGACATTGTAAGCAAAAAGAATATA
TACACAGGTATATCCCGCCCCGAGTCACACAAAAGCATCTACATGCGCAC
CAGCTACATACAAGGCATCTATTCGTAGGCGCGCACGCTCACTTCAACAT
ACATACATACCCCCCCCCTCACACACAACCTTAGAACTTCAGAAGCAGAT
GGTCGACAAATCATTGCAATCCTTTCTGACCCAGTACCAGCAACAGTTTC
ACCCGTCGGCCATTCATCAGCATGCTATCCTGGATGATAAGATGACCAAG
GTACTCTCCCAGGCCTCGCCGTCTTTTCTAGCACAGCAGCACCACCAGCT
CCAGCAGTATTTCAACCGAAGTCACCTACCACTGCAGCTTCATTACTTCC
TAAAATGCCAAATGCAGCCAATTGAAAAGCAGCATATGATGGCGTCGACC
AAGTGCTTTTCTATGAACGAGTTACCGCTCACCACCGAGCACGTGGAAGC
CAAGATCTACCCACCGATTGCACCGCTGAGCGAGACCCCTCTGCTGCTGC
AGGAGATTCGAGCTGGTGTGATGGGTGTTTCGGTGGGACGGCTGCCTGGC
AGATACTCCAAGATCATGGGAAAGTACCTTCCGGTAAGAGAAAAGAGAGA
TATGAGCATGGTGCTTGCGTATTTTATCAACCTTTGTTGGGAACTCACTC
TTTGTTTGTCTCCATTCACTCGTTCTTTATCTACATCAGAGCACAGAGAA
GCAGCGACGAGCAACGAAAGAGGACTTGTCGGGATTAACGGCAGAGGAGA
AGGTGGAGCGACGCAAGATTCGCGCACGCATGTACAATCGCTTGTCTCGC
TACCGGTGCAACCGGTTGCATGGTGACCTGCACAAGGACGTGAGTCGCAT
GGAAATGTACAAGAATATTGTTGAAGATGCGCCGGACATGATATGTGTCA
TCTCCCCCGACATTCAGAGCCAGGTGCTGTACATCAACAAGACCGCTCGA
TGCATCCTTCACGCTGAGCCCGCGCAGCTGGTGGGGTCCAGCTTCTGGAA
TATTGTCCACCCGGAAGATAAGATGGCGCTGTTCAGGGCACTCACTGCCG
TCTCCGCCTTCACGTCGGTCGGGAAAGTGGAACGGCTACGCTGTCGTGTT
GTCACCGACAACCCCGGTATCTATGTATCTGTCCGGATGACGCTCGCGAA
CGGGATGCAGGGCATTGTCTGCGTAATGTGCCACGAAGACCCTCTGTCTA
CCGTTTCGCGCGTGTCGCCTGATGGACGAGCGTGTCTTATGTAG
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Coding sequence (CDS) from alignment at chr30:116205..118798+

>NO30G00280.1 ID=NO30G00280.1|Name=NO30G00280.1|organism=Nannochloropsis oceanica|type=CDS|length=1440bp|location=Sequence derived from alignment at chr30:116205..118798+ (Nannochloropsis oceanica)
ATGGAGATGATCTGGTCCGTGAGCCCTCTGGGAGAATACGTGGGAATCCA
GGTGGCCGGGAACGGCCAGACCTCGCTCTCCATCGGCGTCATTTCCGGCA
AGCCCCGGATGGTGGACACGCCCTACCACCAAGTCATGCTCCTCTCGGAC
TCTATCCGGGCTTCTGCTGGCCCAATGACATTCGCTTATACGTGTTCGTA
TTCTCGAGAGGATATCGGGGCTTTTGGCCCCACTGCTGAGCTGCGGCGGG
ACCAAAGCCAGCGCGACTGCCTCCACGGAATGAAGGATTCTGTCGACTTA
GACGAGAAAAAGGCACACGGCGGCGCGGCAGCCCTGTGCAGCCTAGCAAC
ACTCTCTGCCGCTGCTGACCCGCTTCTCGTCTCCACGCCGTGTTACCCCT
CGTCTTGGGCCTCTTCTCTCGTAGCAGCGAACCACGAACTTCAGAAGCAG
ATGGTCGACAAATCATTGCAATCCTTTCTGACCCAGTACCAGCAACAGTT
TCACCCGTCGGCCATTCATCAGCATGCTATCCTGGATGATAAGATGACCA
AGGTACTCTCCCAGGCCTCGCCGTCTTTTCTAGCACAGCAGCACCACCAG
CTCCAGCAGTATTTCAACCGAAGTCACCTACCACTGCAGCTTCATTACTT
CCTAAAATGCCAAATGCAGCCAATTGAAAAGCAGCATATGATGGCGTCGA
CCAAGTGCTTTTCTATGAACGAGTTACCGCTCACCACCGAGCACGTGGAA
GCCAAGATCTACCCACCGATTGCACCGCTGAGCGAGACCCCTCTGCTGCT
GCAGGAGATTCGAGCTGGTGTGATGGGTGTTTCGGTGGGACGGCTGCCTG
GCAGATACTCCAAGATCATGGGAAAGTACCTTCCGAGCACAGAGAAGCAG
CGACGAGCAACGAAAGAGGACTTGTCGGGATTAACGGCAGAGGAGAAGGT
GGAGCGACGCAAGATTCGCGCACGCATGTACAATCGCTTGTCTCGCTACC
GGTGCAACCGGTTGCATGGTGACCTGCACAAGGACGTGAGTCGCATGGAA
ATGTACAAGAATATTGTTGAAGATGCGCCGGACATGATATGTGTCATCTC
CCCCGACATTCAGAGCCAGGTGCTGTACATCAACAAGACCGCTCGATGCA
TCCTTCACGCTGAGCCCGCGCAGCTGGTGGGGTCCAGCTTCTGGAATATT
GTCCACCCGGAAGATAAGATGGCGCTGTTCAGGGCACTCACTGCCGTCTC
CGCCTTCACGTCGGTCGGGAAAGTGGAACGGCTACGCTGTCGTGTTGTCA
CCGACAACCCCGGTATCTATGTATCTGTCCGGATGACGCTCGCGAACGGG
ATGCAGGGCATTGTCTGCGTAATGTGCCACGAAGACCCTCTGTCTACCGT
TTCGCGCGTGTCGCCTGATGGACGAGCGTGTCTTATGTAG
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Synonyms
Publications