NO30G00100.1, NO30G00100.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO30G00100.1
Unique Name	NO30G00100.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	3053
Alignment location	chr30:46155..49301 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr30	genome	chr30:46155..49301 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO30G00100.1 vs.
Match: XP_003084322.1 (Glycosyl transferase, family 25 [Ostreococcus tauri]; CAL58387.1 Glycosyl transferase, family 25 [Ostreococcus tauri])

HSP 1 Score: 66.6 bits (161), Expect = 1.600e-7
Identity = 46/187 (24.60%), Postives = 83/187 (44.39%), Query Frame = 0

Query:   59 PFPVYYINMNGSEDRRQRTELLFGNL---WDLRRSPAVAGSDSEALMELMGVDNYQRTANYIQHERYDDEDVAWNEAGCTLSHLTTIRKAYLDSNEVVMVMEDDVSPALMPFWSSSIVDLINEADRMNSSIP--WHLIQAGWTWEKDKEIYIKNRPHPGRQLVQERFQWGLFAYIINRRGMETFLDA 241
            P  +Y+IN+  S DR    +     L   +++R    VA ++ EA+        + R   ++ +E +     ++ E  C  SHL  + +A+++ +++ ++MEDDV             D ++  +R     P  W+++Q     EK    + K R     +   E   W   AYIINR+G+   L A
Sbjct:   46 PLAIYWINLQSSADRHHLIKSHLDALAAKFEIRSERIVAVTEQEAVQNSDVFSGWFRFTKHVSYEHHTQNIYSFKELACLQSHLRALERAFVNGDDIAIIMEDDVLLR---------EDFMHNFNRYVQRAPSDWNILQLYTLNEKVIRYFRKLRQTYYIKWFPE--HWSTGAYIINRQGLSKVLRA 221

The following BLAST results are available for this feature:

BLAST of NO30G00100.1 vs.

BLAST of NO30G00100.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
XP_003084322.1	1.600e-7	24.60	Glycosyl transferase, family 25 [Ostreococcus taur...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO30G00100	NO30G00100	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO30G00100.1	NO30G00100.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO30G00100.1.cds1	NO30G00100.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO30G00100.1.cds2	NO30G00100.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr30:46155..49301-
coding sequence from alignment at chr30:46155..49301-

mRNA sequence

>NO30G00100.1 ID=NO30G00100.1|Name=NO30G00100.1|organism=Nannochloropsis oceanica|type=mRNA|length=3053bp
GAAAGATGCATACGGCAAAGATCGATATTTTAGTTTCTATCCCGGCCCAT
TTACGCACATCTTTCTTAGAACCAGGTATTTCATGATGAAATAATGATTT
TCATTATCATTGTCATTTATTTTACACACTCATCGCAAAAATCAGTTTCC
TCATGGAAATTTGGAAAGAGGTTATCAAAGCCTCTCGCACTTACTAGCGA
GGTTTTGCTTTGTATTTTTCAATAATCGATTTCAGCTTACGCTCCAACAG
ACTTCTACCAATTTACAGCCTTATTTGTGAGAATATGAAGAAGAATAATG
CACCCAAAAGCATAGGAAAGACCGCTGCTTTCATTTTAACCTTCATCATG
GTCTATATCTTCCTATCACACGGCGAGAGCGTGCTCATGAATTTTTTTCA
AACAAGTGGTCATGCCAAGGAGAGTACCCACCTATTTGGTGGTATTGATT
ACAAATTGCCTTTTCCTGTGTACTATATCAACATGAATGGCAGCGAAGAT
CGTCGGCAGCGTACTGAACTCCTCTTTGGGAACTTATGGGATCTTCGACG
GAGTCCGGCGGTAGCAGGGAGTGATTCAGAAGCTTTAATGGAGCTCATGG
GTGTGGATAATTATCAGCGAACCGCCAACTACATTCAGCATGAGAGATAT
GATGATGAAGATGTGGCGTGGAACGAAGCTGGATGCACGTTGTCCCATTT
GACCACTATCCGGAAGGCATATTTGGATAGCAATGAGGTGGTCATGGTTA
TGGAGGACGATGTATCGCCAGCTTTGATGCCGTTTTGGTCATCGTCCATA
GTCGACCTCATAAATGAGGCCGATAGGATGAACTCTTCTATTCCCTGGCA
CTTGATCCAAGCAGGATGGACTTGGGAAAAGGATAAGGAGATCTATATTA
AAAATCGTCCCCACCCAGGACGGCAACTAGTACAGGAACGGTTTCAATGG
GGACTTTTTGCGTATATTATAAATAGACGCGGGATGGAGACGTTCTTAGA
TGCCTATTTCTCCGACAGATCCCCGACAGGCTTGATCCGCCACTTAAACG
TGGGTGAAGTGGCTGAAAACTACTTTAATATATTAGAGACCAGCATCTAC
GTTGCTCTTCCTTCTTTATTTGTCATTCACGGGGGCGAAAGCACTATTGC
TGGTGGACACGGGCATCGCATGCATATTCACCTCCGCTCTAATAGCGTTC
ACACACAGGAAACCTTGCGGCTCATGGTTGAGCGCCTCAGAAATGAAAAC
ATAGGACAAGAGAATCGTTACAACTGACTTATCCTTTCTACAAGAAAGCT
TCCACAGATTAAGAATGTATGAGGCAAAAAAGTCAACTGGATGTGGCCCC
TTGTGTAAGTTCTCTATTAAGGAACCATGTGTACGCAACCCAGAATACTT
AGATACCTTGAGTTGGCGTTTCTAGTCGCCAAGAAAAAATGCGAAAAATG
CAATTCTTCGTTGAACTTACTAGAAAAGAAACAATGTTCAGAATTACTGC
TCACAAGGAAAAAAGCACTAACTTCGAATTTGGATAGGGAAAGGGGAAGG
AGGAGAAGAAGGCAGAAGGAGGCCGGCCCCCTTGAACATCTTGATACTGG
TACGAAGGCCATGAAGATTGGGAGTGACAGGAGGAAGAAGCACCTTCTCC
TGGTTTTTGGCTAATTAACTATTTCAGATCAACTTGGACTCCAACCATGC
TCAGTGTAGTGCTTATTAGTACATTACATATATGAGTTACTATTTGGTGG
CAAACAGAACACCTCAAAAATATTCATAGAAAGCCTTCTTGCTGAGCGTT
TCGACCCCTCGTCGTACTGTCTTCTCCTGAGTGATGTATTTATAAATTCT
TTGGCATTCGAGGACGAGGCTTCTTTACTAGGTGTTAGCTTAAGGCAAGC
CTAGCTTGTTCACTGTATGTTGACCCATTTGGACCCGGCACCGGCTGGTG
TATCGAGACACTCGGATGCGCGGAGGGGCGTACGGGAAGGGAATGCTGTC
GTTCTATTTGTTGCTGCCTATACCTAAAGTAGTGAGATCCCCCCTTGTTG
ATGAGAGCTTTCTTTGCTAGCTGCTTGCTATTTCCCTTGTGTGCTAACCA
TACACACAATGCGCTCGTCACACAAGGTTTGCTGTAAGATATACCATCTG
CTGCACTTGCCGCTAGAATTCCCGTACATATGTTCTTGTGCGCATGCGGG
ACAGTGATTAATGTCGCCCTCTCCTTCGGGGCCAACAAGTCGCCAGGTTT
TGCCGCACTGACATACATTGACAAGCACGGGTGAGCAACGTCTCCCAGCG
GCGCATCATGGCCTTCATCATGGTGCTCGAAAAGATACGTTTGGTTTAGA
TAAGGGCAAAGACGTGGTCTTGCTCAAGGACCAAACAGATATTCGCTATT
CATAGACAAGGAGATGACTCTGTCTCTACTCGAATCCAGAGAGGGGCACC
GGGTATTGATATTTCGGGTACCCAAAAAAACCCGGGTAAATACCCGGGTA
AAACCCCACCCGAGTAAGTATTTCCAACTGGGTACCCAAGTGACCTGGGC
ACCTGGAATAACAGTTGTGGGAAAACGAGAGGAAAGAAAAGGAGAGGTGG
AAATGAAAAGGAAGGCGAGAAGAGAAGGGACTGGACGCTTTTGTTATACG
CGTTTCCAAGTAACTCAGCGCGAAGAGGAATCTATGTAGGGGGGCCCTGG
CATCCGATTTCCCCACTCATACTCCCTCCATCAGATCTCTTCCTCACACA
CACCCTCCAACGGGTTTCCCCGGGTAGACGTCTGGACAACACAGGTCTAC
CCGGGTAGGAGAAATGCTACCCGGTGCCCATGCCTGCTCGAACCGAGCAT
TTTTATACGTATGGCTCAAGATGTAGACCCACATAATTGGATGCCTGAGC
GACGATGAGGTATAAATGTCATCAAACTCTCCTTCTTATCACACGGCCTA
TACAGAAAGTTATGTACGTTTTTCGCTCTTTTTACTTTTTTTGGATTTTA
ATCACCATCACGAGCCTTGCCACCGACACGATTGCATCTACTTCTATCAT
AAT

protein sequence of NO30G00100.1

>NO30G00100.1-protein ID=NO30G00100.1-protein|Name=NO30G00100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=331bp
MKKNNAPKSIGKTAAFILTFIMVYIFLSHGESVLMNFFQTSGHAKESTHL
FGGIDYKLPFPVYYINMNGSEDRRQRTELLFGNLWDLRRSPAVAGSDSEA
LMELMGVDNYQRTANYIQHERYDDEDVAWNEAGCTLSHLTTIRKAYLDSN
EVVMVMEDDVSPALMPFWSSSIVDLINEADRMNSSIPWHLIQAGWTWEKD
KEIYIKNRPHPGRQLVQERFQWGLFAYIINRRGMETFLDAYFSDRSPTGL
IRHLNVGEVAENYFNILETSIYVALPSLFVIHGGESTIAGGHGHRMHIHL
RSNSVHTQETLRLMVERLRNENIGQENRYN*

mRNA from alignment at chr30:46155..49301-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO30G00100.1 ID=NO30G00100.1|Name=NO30G00100.1|organism=Nannochloropsis oceanica|type=mRNA|length=3147bp|location=Sequence derived from alignment at chr30:46155..49301- (Nannochloropsis oceanica)
GAAAGATGCATACGGCAAAGATCGATATTTTAGTTTCTATCCCGGCCCAT
TTACGCACATCTTTCTTAGAACCAGGTATTTCATGATGAAATAATGATTT
TCATTATCATTGTCATTTATTTTACACACTCATCGCAAAAATCAGTTTCC
TCATGGAAATTTGGAAAGAGGTTATCAAAGCCTCTCGCACTTACTAGCGA
GGTTTTGCTTTGTATTTTTCAATAATCGATTTCAGCTTACGCTCCAACAG
ACTTCTACCAATTTACAGCCTTATTTGTGAGAATATGAAGAAGAATAATG
CACCCAAAAGCATAGGAAAGACCGCTGCTTTCATTTTAACCTTCATCATG
GTCTATATCTTCCTATCACACGGCGAGAGCGTGCTCATGAATTTTTTTCA
AACAAGTGGTCATGCCAAGGAGAGTACCCACCTATTTGGTGGTATTGATT
ACAAATTGCCTTTTCCTGTGTACTATATCAACATGAATGGCAGCGAAGAT
CGTCGGCAGCGTACTGAACTCCTCTTTGGGAACTTATGGGATCTTCGACG
GAGTCCGGCGGTAGCAGGGAGTGATTCAGAAGCTTTAATGGAGCTCATGG
GTGTGGATAATTATCAGCGAACCGCCAACTACATTCAGCATGAGAGATAT
GATGATGAAGATGTGGCGTGGAACGAAGCTGGATGCACGTTGTCCCATTT
GACCACTATCCGGAAGGCATATTTGGATAGCAATGAGGTGGTCATGGTTA
TGGAGGACGATGTATCGCCAGCTTTGATGTGAGTTGGTCTCATTTTGTAA
CGATGCATTCGCAAATTTCTCTCCTTATCTTCATCACACGACCATCTTAT
ATCTCATATCATGCGGATACAGGCCGTTTTGGTCATCGTCCATAGTCGAC
CTCATAAATGAGGCCGATAGGATGAACTCTTCTATTCCCTGGCACTTGAT
CCAAGCAGGATGGACTTGGGAAAAGGATAAGGAGATCTATATTAAAAATC
GTCCCCACCCAGGACGGCAACTAGTACAGGAACGGTTTCAATGGGGACTT
TTTGCGTATATTATAAATAGACGCGGGATGGAGACGTTCTTAGATGCCTA
TTTCTCCGACAGATCCCCGACAGGCTTGATCCGCCACTTAAACGTGGGTG
AAGTGGCTGAAAACTACTTTAATATATTAGAGACCAGCATCTACGTTGCT
CTTCCTTCTTTATTTGTCATTCACGGGGGCGAAAGCACTATTGCTGGTGG
ACACGGGCATCGCATGCATATTCACCTCCGCTCTAATAGCGTTCACACAC
AGGAAACCTTGCGGCTCATGGTTGAGCGCCTCAGAAATGAAAACATAGGA
CAAGAGAATCGTTACAACTGACTTATCCTTTCTACAAGAAAGCTTCCACA
GATTAAGAATGTATGAGGCAAAAAAGTCAACTGGATGTGGCCCCTTGTGT
AAGTTCTCTATTAAGGAACCATGTGTACGCAACCCAGAATACTTAGATAC
CTTGAGTTGGCGTTTCTAGTCGCCAAGAAAAAATGCGAAAAATGCAATTC
TTCGTTGAACTTACTAGAAAAGAAACAATGTTCAGAATTACTGCTCACAA
GGAAAAAAGCACTAACTTCGAATTTGGATAGGGAAAGGGGAAGGAGGAGA
AGAAGGCAGAAGGAGGCCGGCCCCCTTGAACATCTTGATACTGGTACGAA
GGCCATGAAGATTGGGAGTGACAGGAGGAAGAAGCACCTTCTCCTGGTTT
TTGGCTAATTAACTATTTCAGATCAACTTGGACTCCAACCATGCTCAGTG
TAGTGCTTATTAGTACATTACATATATGAGTTACTATTTGGTGGCAAACA
GAACACCTCAAAAATATTCATAGAAAGCCTTCTTGCTGAGCGTTTCGACC
CCTCGTCGTACTGTCTTCTCCTGAGTGATGTATTTATAAATTCTTTGGCA
TTCGAGGACGAGGCTTCTTTACTAGGTGTTAGCTTAAGGCAAGCCTAGCT
TGTTCACTGTATGTTGACCCATTTGGACCCGGCACCGGCTGGTGTATCGA
GACACTCGGATGCGCGGAGGGGCGTACGGGAAGGGAATGCTGTCGTTCTA
TTTGTTGCTGCCTATACCTAAAGTAGTGAGATCCCCCCTTGTTGATGAGA
GCTTTCTTTGCTAGCTGCTTGCTATTTCCCTTGTGTGCTAACCATACACA
CAATGCGCTCGTCACACAAGGTTTGCTGTAAGATATACCATCTGCTGCAC
TTGCCGCTAGAATTCCCGTACATATGTTCTTGTGCGCATGCGGGACAGTG
ATTAATGTCGCCCTCTCCTTCGGGGCCAACAAGTCGCCAGGTTTTGCCGC
ACTGACATACATTGACAAGCACGGGTGAGCAACGTCTCCCAGCGGCGCAT
CATGGCCTTCATCATGGTGCTCGAAAAGATACGTTTGGTTTAGATAAGGG
CAAAGACGTGGTCTTGCTCAAGGACCAAACAGATATTCGCTATTCATAGA
CAAGGAGATGACTCTGTCTCTACTCGAATCCAGAGAGGGGCACCGGGTAT
TGATATTTCGGGTACCCAAAAAAACCCGGGTAAATACCCGGGTAAAACCC
CACCCGAGTAAGTATTTCCAACTGGGTACCCAAGTGACCTGGGCACCTGG
AATAACAGTTGTGGGAAAACGAGAGGAAAGAAAAGGAGAGGTGGAAATGA
AAAGGAAGGCGAGAAGAGAAGGGACTGGACGCTTTTGTTATACGCGTTTC
CAAGTAACTCAGCGCGAAGAGGAATCTATGTAGGGGGGCCCTGGCATCCG
ATTTCCCCACTCATACTCCCTCCATCAGATCTCTTCCTCACACACACCCT
CCAACGGGTTTCCCCGGGTAGACGTCTGGACAACACAGGTCTACCCGGGT
AGGAGAAATGCTACCCGGTGCCCATGCCTGCTCGAACCGAGCATTTTTAT
ACGTATGGCTCAAGATGTAGACCCACATAATTGGATGCCTGAGCGACGAT
GAGGTATAAATGTCATCAAACTCTCCTTCTTATCACACGGCCTATACAGA
AAGTTATGTACGTTTTTCGCTCTTTTTACTTTTTTTGGATTTTAATCACC
ATCACGAGCCTTGCCACCGACACGATTGCATCTACTTCTATCATAAT

Coding sequence (CDS) from alignment at chr30:46155..49301-

>NO30G00100.1 ID=NO30G00100.1|Name=NO30G00100.1|organism=Nannochloropsis oceanica|type=CDS|length=993bp|location=Sequence derived from alignment at chr30:46155..49301- (Nannochloropsis oceanica)
ATGAAGAAGAATAATGCACCCAAAAGCATAGGAAAGACCGCTGCTTTCAT
TTTAACCTTCATCATGGTCTATATCTTCCTATCACACGGCGAGAGCGTGC
TCATGAATTTTTTTCAAACAAGTGGTCATGCCAAGGAGAGTACCCACCTA
TTTGGTGGTATTGATTACAAATTGCCTTTTCCTGTGTACTATATCAACAT
GAATGGCAGCGAAGATCGTCGGCAGCGTACTGAACTCCTCTTTGGGAACT
TATGGGATCTTCGACGGAGTCCGGCGGTAGCAGGGAGTGATTCAGAAGCT
TTAATGGAGCTCATGGGTGTGGATAATTATCAGCGAACCGCCAACTACAT
TCAGCATGAGAGATATGATGATGAAGATGTGGCGTGGAACGAAGCTGGAT
GCACGTTGTCCCATTTGACCACTATCCGGAAGGCATATTTGGATAGCAAT
GAGGTGGTCATGGTTATGGAGGACGATGTATCGCCAGCTTTGATGCCGTT
TTGGTCATCGTCCATAGTCGACCTCATAAATGAGGCCGATAGGATGAACT
CTTCTATTCCCTGGCACTTGATCCAAGCAGGATGGACTTGGGAAAAGGAT
AAGGAGATCTATATTAAAAATCGTCCCCACCCAGGACGGCAACTAGTACA
GGAACGGTTTCAATGGGGACTTTTTGCGTATATTATAAATAGACGCGGGA
TGGAGACGTTCTTAGATGCCTATTTCTCCGACAGATCCCCGACAGGCTTG
ATCCGCCACTTAAACGTGGGTGAAGTGGCTGAAAACTACTTTAATATATT
AGAGACCAGCATCTACGTTGCTCTTCCTTCTTTATTTGTCATTCACGGGG
GCGAAAGCACTATTGCTGGTGGACACGGGCATCGCATGCATATTCACCTC
CGCTCTAATAGCGTTCACACACAGGAAACCTTGCGGCTCATGGTTGAGCG
CCTCAGAAATGAAAACATAGGACAAGAGAATCGTTACAACTGA

Synonyms

Publications