NO30G00050.1, NO30G00050.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO30G00050.1
Unique NameNO30G00050.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length717
Alignment locationchr30:19466..20786 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:19466..20786 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO30G00050.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO30G00050NO30G00050Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO30G00050.1NO30G00050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO30G00050.1.cds1NO30G00050.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00050.1.cds2NO30G00050.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00050.1.cds3NO30G00050.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00050.1.cds4NO30G00050.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00050.1.cds5NO30G00050.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO30G00050.1 ID=NO30G00050.1|Name=NO30G00050.1|organism=Nannochloropsis oceanica|type=mRNA|length=717bp
ATGACGAAGGATGAGGTGCTTGCGGCGGCGAGCCGGGCAGCATCCAAGAT
GGCAGCGGCTCGCGTAAAACGCTTGGAAGGGGACGTGGAGATGTGGAGGA
GGGAGCAGCGCAGCAATTACGCCATCATCGCCAATACGAACTTAAGATTG
GAGATTGCGAGAGTGCTGAAGGAGAAGGAGATCGAGCTAGATGCAATGCG
GAAGAAGAACGACCCACGAATTACTGAGCGAGCCCGGAGGGAGGAAAGTA
CAACGCTTCCCTTCATAAAACCCGCCAGCAAGTGGATACTCTCAAGGTTC
ACATTCTGGAGCCCAGGAAACAAGGCTGCCCTCGACAATGCCAAGCGCTA
CATCCAGCAGCTGAAGGCTGCTAAGACGAAGATGAAAGCCGATGTCACCC
TGTACTACAAGGAAGACGACAGGCTGAATTCGGAGTTGGTGGACCGCATC
CAAGACGTCGTGCAGTGGGCAAAAGCTAGTCATAAAGGCACCCACGGCCA
GCAGACTTACGAGACGCTATGCACCGCTGTAGTAGATTGGCAGAGCAAGG
AGGATGGTGGACGTGTAGCTAGGACCCATGCATCAGCTTTAAATCACAAA
GTGTCCTTCCCAATTCTATATGATGGTCGCTTCGCGGAGCATTGTCTCGA
GGTGTTTGCTAAGGCAGAGTACGCTTGGTTTGTCCAACATGGACCAACAC
TTGATGGATGTGGATGA
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protein sequence of NO30G00050.1

>NO30G00050.1-protein ID=NO30G00050.1-protein|Name=NO30G00050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=239bp
MTKDEVLAAASRAASKMAAARVKRLEGDVEMWRREQRSNYAIIANTNLRL
EIARVLKEKEIELDAMRKKNDPRITERARREESTTLPFIKPASKWILSRF
TFWSPGNKAALDNAKRYIQQLKAAKTKMKADVTLYYKEDDRLNSELVDRI
QDVVQWAKASHKGTHGQQTYETLCTAVVDWQSKEDGGRVARTHASALNHK
VSFPILYDGRFAEHCLEVFAKAEYAWFVQHGPTLDGCG*
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mRNA from alignment at chr30:19466..20786+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO30G00050.1 ID=NO30G00050.1|Name=NO30G00050.1|organism=Nannochloropsis oceanica|type=mRNA|length=1321bp|location=Sequence derived from alignment at chr30:19466..20786+ (Nannochloropsis oceanica)
ATGACGAAGGATGAGGTGCTTGCGGCGGCGAGCCGGGCAGCATCCAAGAT
GGCAGCGGCTCGCGTAAAACGCTTGGAAGGGGACGTGGAGATGTGGAGGA
GGGAGCAGCGCAGCAATTACGCCATCATCGCCAATACGAACTTAAGATTG
GAGATTGCGAGAGTGCTGAAGGAGAAGGAGATCGAGCTAGATGCAATGCG
GAAGAAGAACGACCCACGAATTACTGAGCGAGCCCGGAGGGAGGAAAGTA
CAACGCTTCCCTTCATAAAACCCGCCAGCAAGTGGATACTCTCAAGGTTC
ACATTCTGGAGGTGAGGAGGGAGCGGGATAAGTGGAAGGAAAAGAGCGTC
AATGACGAAAGGAAGAAGAAAGATCTTCAATCAGAGGTGCAACATTTGAA
GGGTATGGAAGAGAAGGCGGCGATTTAAAGGGGGAGGTACATGCACCTAG
CCCAGGAAACAAGGCTGCCCTCGACAATGCCAAGCGCTACATCCAGCAGC
TGAAGGCTGCTAAGACGAAGATGAAAGTATGTGTGGTGATAGGAGACATT
GAAGAGGATAAAACGGAAATATGTAGGTCTACGATTTACCAAAGGGCGGA
CGTCCTTGCCAAATCAATTCTTTTCGTGGCCAGCTAAAGCATGAAATATT
TTGATCGCGTGTGGGGACTGTTGACGAGGAGGGCAGTAAACATAGATGCA
TTCAAGGCCGATGTCACCCTGTACTACAAGGAAGACGACAGGCTGAATTC
GGAGTTGGTGGACCGCATCCAAGACGTCGTGCAGTGGGCAAAAGCTAGTC
ATAAAGGCACCCACGGCCAGCAGACTTACGAGACGCTATGCACCGCTGTA
GTAGATTGGCAGAGCAAGGAGGATGGTGGACGTGTAGCGTGAGTGAGGAA
GCGCCCTGATATATTGCACATTAAGCAAATACTTAGTGAGAAAGGAAGGA
TGGGAGCCCCATGATCTAATCCTAACCCATACATCACTTCCCTCCCTTAC
ACGTACAAACGCGACCACACGCGTACAAATATCACAGTAGGACCCATGCA
TCAGCTTTAAATCACAAAGTGTCCTTCCCAATTCTATATGATGGTCGCTT
CGCGGAGGTGCGTGCCATGCTTCTTACCCTACCTTCCGATACACTATTTT
AATGCTCACATCCAAGGCATTTACTTGCCCATACGATGTCCTTCACGACC
ACTTCCTCCCTCTTTCCTCACACAATTCCGATCACATACACAGCATTGTC
TCGAGGTGTTTGCTAAGGCAGAGTACGCTTGGTTTGTCCAACATGGACCA
ACACTTGATGGATGTGGATGA
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Coding sequence (CDS) from alignment at chr30:19466..20786+

>NO30G00050.1 ID=NO30G00050.1|Name=NO30G00050.1|organism=Nannochloropsis oceanica|type=CDS|length=717bp|location=Sequence derived from alignment at chr30:19466..20786+ (Nannochloropsis oceanica)
ATGACGAAGGATGAGGTGCTTGCGGCGGCGAGCCGGGCAGCATCCAAGAT
GGCAGCGGCTCGCGTAAAACGCTTGGAAGGGGACGTGGAGATGTGGAGGA
GGGAGCAGCGCAGCAATTACGCCATCATCGCCAATACGAACTTAAGATTG
GAGATTGCGAGAGTGCTGAAGGAGAAGGAGATCGAGCTAGATGCAATGCG
GAAGAAGAACGACCCACGAATTACTGAGCGAGCCCGGAGGGAGGAAAGTA
CAACGCTTCCCTTCATAAAACCCGCCAGCAAGTGGATACTCTCAAGGTTC
ACATTCTGGAGCCCAGGAAACAAGGCTGCCCTCGACAATGCCAAGCGCTA
CATCCAGCAGCTGAAGGCTGCTAAGACGAAGATGAAAGCCGATGTCACCC
TGTACTACAAGGAAGACGACAGGCTGAATTCGGAGTTGGTGGACCGCATC
CAAGACGTCGTGCAGTGGGCAAAAGCTAGTCATAAAGGCACCCACGGCCA
GCAGACTTACGAGACGCTATGCACCGCTGTAGTAGATTGGCAGAGCAAGG
AGGATGGTGGACGTGTAGCTAGGACCCATGCATCAGCTTTAAATCACAAA
GTGTCCTTCCCAATTCTATATGATGGTCGCTTCGCGGAGCATTGTCTCGA
GGTGTTTGCTAAGGCAGAGTACGCTTGGTTTGTCCAACATGGACCAACAC
TTGATGGATGTGGATGA
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Synonyms
Publications