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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr3 | genome | chr3:1645428..1647958 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G05730.3 vs.
Match: EWM30047.1 (Dihydrodipicolinate reductase [Nannochloropsis gaditana]) HSP 1 Score: 439.5 bits (1129), Expect = 7.700e-120 Identity = 215/253 (84.98%), Postives = 233/253 (92.09%), Query Frame = 0
Query: 24 EEESVEVDDGEGGQKQTVRLVKGPLTGNGDEECDARLQGLLAGYRDSKTRLIAVDYTHPTAVNPNGKLYARHKLDFVMGTTGGDREKLMDDVAAGGIYAVIAPNMAKQIVALQAGLETMAATFPGAFEGYTLNVVESHQSSKADTSGTAKALISSFGKLLGKAYHVEDVIRMIRDREGQLGFGVPEAGLGGHAFHTYQLLSPDGSVEFQFRHNVVGRRVYAEGTVDALVFLAKQAGSEKKVYNMIDVLKAGAM 277
+EE V+VDDGEGG+ QT+RLVKGP+TG GDEECDARLQGL+AGYR+S TRLIAVDYTHPTAVNPNG LYARHK+DFVMGTTGGDR+KL+ DV GIYAVIAPNMAKQIVALQAGLETMA TFPGAFEGY L VVESHQSSKADTSGTAKALI+SFG L+GK Y VEDVI MIRDREGQL FGVPEAGLGGHAFHTYQLLSPDGSVEFQFRHNVVGRR+YAEGTVDAL +LA+Q G +KKV+NM+DVLKAGAM
Sbjct: 81 DEECVDVDDGEGGKPQTIRLVKGPVTGAGDEECDARLQGLVAGYRESGTRLIAVDYTHPTAVNPNGMLYARHKMDFVMGTTGGDRDKLLKDVEEAGIYAVIAPNMAKQIVALQAGLETMAGTFPGAFEGYNLRVVESHQSSKADTSGTAKALIASFGTLVGKPYKVEDVIAMIRDREGQLEFGVPEAGLGGHAFHTYQLLSPDGSVEFQFRHNVVGRRIYAEGTVDALTYLAQQHGPDKKVFNMVDVLKAGAM 333
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G05730.3 ID=NO03G05730.3|Name=NO03G05730.3|organism=Nannochloropsis oceanica|type=mRNA|length=1302bp ACAGGCTCGGCTATCTTTTGGGCCGTGTCGTCTGCACCACGCTGCTTCCT TATCTCCTTCTTTTGGCAGTCCAAGCCACTCTTCCCACGCCCAGCTATTG CAATGCCTGCCGTTCCTTCCACGCGAGGAGCAAGCGCACTCGTGCTCTTG CTCGTTGTCCTCTTCCCGGCCCTGGTCACCTCCTTCGTTACCCTCCATGG TGCATACAAGCCCCAACAGCAACCTCGGCATTCGAGCCTCCGCATGATTG CTGCCGCTCCCAAGGTCGCGGTGATGGTTAATGGTTTGCCGGGTGCTATG GGCAAGGAAGTGGCTGCGGCCTGCCTGCGAAGAGGACTGGCAGTGTGCTC GGTGGGCTTGACGGGTCCGCAAATTGGTAGGTGCGGGGAGGGAAGAGGAG AGAAGGGAGCGAAGGAGAAATGCAGGAGGCTATCCTCATCGCTTCTTATA TTTTTTCTTTTCTTCTCCTCCACTACCGCCATCCCAAAGAGGAGGAGAGC GTGGAGGTGGATGATGGGGAGGGCGGCCAGAAGCAGACAGTGCGCTTGGT GAAGGGGCCCCTCACGGGGAACGGCGACGAGGAGTGCGACGCCCGGTTGC AAGGCCTGCTGGCCGGCTACCGTGACAGCAAAACGCGGCTGATTGCCGTG GACTACACTCATCCCACTGCTGTGAACCCAAATGGCAAGCTCTACGCCCG CCACAAGCTCGACTTCGTCATGGGCACGACGGGCGGGGATCGGGAAAAGC TGATGGACGACGTGGCTGCGGGCGGGATCTACGCCGTCATTGCCCCCAAT ATGGCGAAGCAGATCGTGGCCTTGCAGGCGGGCTTGGAGACGATGGCGGC CACGTTTCCGGGGGCCTTCGAAGGCTACACCCTCAATGTGGTGGAGTCCC ACCAGAGCAGCAAGGCGGACACCAGCGGCACGGCCAAGGCCTTGATCAGC TCCTTTGGGAAGCTGCTGGGCAAGGCCTACCATGTGGAGGACGTGATCCG CATGATCCGGGATCGGGAGGGGCAGCTCGGCTTCGGTGTGCCCGAGGCCG GTTTGGGCGGACACGCCTTCCACACCTACCAACTCCTCTCACCAGACGGC AGCGTGGAGTTCCAATTCCGACACAACGTGGTGGGCCGCCGTGTCTATGC CGAGGGGACGGTGGATGCGTTGGTATTTTTGGCTAAGCAGGCGGGCAGTG AGAAGAAGGTCTACAATATGATTGACGTCTTGAAGGCGGGAGCCATGTAG GGACGGAGGGAGGGTAGGGAGGAGGGAGGGTAGGGAGGAGGGAGGGTGAG GA back to topprotein sequence of NO03G05730.3 >NO03G05730.3-protein ID=NO03G05730.3-protein|Name=NO03G05730.3|organism=Nannochloropsis oceanica|type=polypeptide|length=277bp MQEAILIASYIFSFLLLHYRHPKEEESVEVDDGEGGQKQTVRLVKGPLTG NGDEECDARLQGLLAGYRDSKTRLIAVDYTHPTAVNPNGKLYARHKLDFV MGTTGGDREKLMDDVAAGGIYAVIAPNMAKQIVALQAGLETMAATFPGAF EGYTLNVVESHQSSKADTSGTAKALISSFGKLLGKAYHVEDVIRMIRDRE GQLGFGVPEAGLGGHAFHTYQLLSPDGSVEFQFRHNVVGRRVYAEGTVDA LVFLAKQAGSEKKVYNMIDVLKAGAM* back to topmRNA from alignment at chr3:1645428..1647958- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G05730.3 ID=NO03G05730.3|Name=NO03G05730.3|organism=Nannochloropsis oceanica|type=mRNA|length=2531bp|location=Sequence derived from alignment at chr3:1645428..1647958- (Nannochloropsis oceanica) ACAGGCTCGGCTATCTTTTGGGCCGTGTCGTCTGCACCACGCTGCTTCCT
TATCTCCTTCTTTTGGCAGTCCAAGCCACTCTTCCCACGCCCAGCTATTG
CAATGCCTGCCGTTCCTTCCACGCGAGGTAAGGCAATCTCCCCTATTTGC
CGTGCCGTCCCCACGCTTGGCGCCAATTAAATTTGCCATTATCCCTTCCG
CCTTTATAATCCCCTAGGAGCAAGCGCACTCGTGCTCTTGCTCGTTGTCC
TCTTCCCGGCCCTGGTCACCTCCTTCGTTACCCTCCATGGTGCATACAAG
CCCCAACAGCAACCTCGGCATTCGAGCCTCCGCATGATTGCTGCCGCTCC
CAAGGTACGGTCAACTCCTTTCATTCTTCTACATGTGTGTGCCTTTATCA
TTCTAAGATATGTACTTGTCGCATCGGTGACCTTGAGATGGATTTATTTC
CATGCCTGTGGTTCTCCTCCCGTGCTCATCCCGTCCTCTCTATCTCCCCC
CCTCCCTCGGCCATGTGCCCTCTAGGTCGCGGTGATGGTTAATGGTTTGC
CGGGTGCTATGGGCAAGGAAGTGGCTGCGGCCTGCCTGCGAAGAGGACTG
GCAGTGTGCTCGGTGGGCTTGACGGGTCCGCAAATTGGTAGGTGCGGGGA
GGGAAGAGGAGAGAAGGGAGCGAAGGAGAAATGCAGGAGGCTATCCTCAT
CGCTTCTTATATTTTTTCTTTTCTTCTCCTCCACTACCGCCATCCCAAAG
AGGAGGAGAGCGTGGAGGTGGATGATGGGGAGGGCGGCCAGAAGCAGACA
GTGCGCTTGGTGAAGGGGCCCCTCACGGGGAACGGCGACGAGGAGTGCGA
CGCCCGGTTGCAAGGTGAGGCGAGGGGGTAGGATGTGGGGGAAGTATGAA
GAGAAAGGGCAGCGTGGGTGTATCGCCGGGTGAAATCACTCGAATCTGGC
TCCTGACTTCCTCTCTCTGTCCTCCCTCCCTCTCTCCAATCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTT
ACCACACCAGGCCTGCTGGCCGGCTACCGTGACAGCAAAACGCGGCTGAT
TGCCGTGGACTACACTCATCCCACTGCTGTGAACCCAAATGGCAAGCTCT
ACGCCCGCCACAAGCTCGACTTCGTCATGGTACACGGGCATCTCCTCCCT
CCCTCCTCCCCTCCCTCCCTCCCTCCCTCCCTCCTGCGCTTCCTGCCTGC
CCACTCTACCCTCCCCCTGTCCCCCTTCCTCTAACCTTAAACCAGGGCAC
GACGGGCGGGGATCGGGAAAAGCTGATGGACGACGTGGCTGCGGGCGGGA
TCTACGCCGTCATTGCCCCCAATATGGCGAAGCAGATCGTGGCCTTGCAG
GTGGAGAGGAGGGCAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGGTGGAACGAAGGAAAGGTGGCATGTCGGAGGGAGGCCAGAACTGATG
CTCACACAATCACATACACACCCGTTAGGCGGGCTTGGAGACGATGGCGG
CCACGTTTCCGGGGGCCTTCGAAGGCTACACCCTCAATGTACGTCGTCTT
GTCTGCCCTCCCTCCCTCCACGACTCGTTGCCGTCCACCCTTCTTCCCCT
CCTTCGAGTGTTTCTTATCCCCCTTTCCAGGAACATTTGTATCGTCCTTG
CCTCTCAAGTCACTCGGCTTCCCTCCCACCCTCCCTCCCGTCCTCCCCCT
CGGCCCTAGGTGGTGGAGTCCCACCAGAGCAGCAAGGCGGACACCAGCGG
CACGGCCAAGGCCTTGATCAGCTCCTTTGGGAAGCTGCTGGGCAAGGCCT
ACCATGTGGAGGACGTGATCCGCATGATCCGGGATCGGGAGGGGCAGGTA
AGGATGGTGGGGTTCCGGAAAGGTGTGTGCGAGGACGTCATTAAGGAGAA
GCCCTCCTGAAGCAGGTTCTTCCATCCCGACCTCCACGAGAGTCCAACCT
CTTGGAAAAGCCGCCTTGGTATCCCATCCGTTTTCATTCTTTTATCTTCT
ATTCCTCCTCTCCTCCCTCCTTCCTCCCTTTCTCTCCCCCTCTCCTTCAG
CTCGGCTTCGGTGTGCCCGAGGCCGGTTTGGGCGGACACGCCTTCCACAC
CTACCAACTCCTCTCACCAGACGGCAGGTACAAGTCAGGAGGGGGGAGAT
TGAGGCTCTTTATGCTTTTCCTCTTTGGTGATCTTCTCTGAGTGTCATTC
GGGCATCTTCCGTCTTTCACTCTCACTCAGACCCTCCCTCCCTCCCTCCC
TCCCTCCCCCCCGCCCTCCGTAACCCTGAAGCGTGGAGTTCCAATTCCGA
CACAACGTGGTGGGCCGCCGTGTCTATGCCGAGGGGACGGTGGATGCGTT
GGTATTTTTGGCTAAGCAGGCGGGCAGTGAGAAGAAGGTCTACAATATGA
TTGACGTCTTGAAGGCGGGAGCCATGTAGGGACGGAGGGAGGGTAGGGAG
GAGGGAGGGTAGGGAGGAGGGAGGGTGAGGA back to topCoding sequence (CDS) from alignment at chr3:1645428..1647958- >NO03G05730.3 ID=NO03G05730.3|Name=NO03G05730.3|organism=Nannochloropsis oceanica|type=CDS|length=831bp|location=Sequence derived from alignment at chr3:1645428..1647958- (Nannochloropsis oceanica) ATGCAGGAGGCTATCCTCATCGCTTCTTATATTTTTTCTTTTCTTCTCCT CCACTACCGCCATCCCAAAGAGGAGGAGAGCGTGGAGGTGGATGATGGGG AGGGCGGCCAGAAGCAGACAGTGCGCTTGGTGAAGGGGCCCCTCACGGGG AACGGCGACGAGGAGTGCGACGCCCGGTTGCAAGGCCTGCTGGCCGGCTA CCGTGACAGCAAAACGCGGCTGATTGCCGTGGACTACACTCATCCCACTG CTGTGAACCCAAATGGCAAGCTCTACGCCCGCCACAAGCTCGACTTCGTC ATGGGCACGACGGGCGGGGATCGGGAAAAGCTGATGGACGACGTGGCTGC GGGCGGGATCTACGCCGTCATTGCCCCCAATATGGCGAAGCAGATCGTGG CCTTGCAGGCGGGCTTGGAGACGATGGCGGCCACGTTTCCGGGGGCCTTC GAAGGCTACACCCTCAATGTGGTGGAGTCCCACCAGAGCAGCAAGGCGGA CACCAGCGGCACGGCCAAGGCCTTGATCAGCTCCTTTGGGAAGCTGCTGG GCAAGGCCTACCATGTGGAGGACGTGATCCGCATGATCCGGGATCGGGAG GGGCAGCTCGGCTTCGGTGTGCCCGAGGCCGGTTTGGGCGGACACGCCTT CCACACCTACCAACTCCTCTCACCAGACGGCAGCGTGGAGTTCCAATTCC GACACAACGTGGTGGGCCGCCGTGTCTATGCCGAGGGGACGGTGGATGCG TTGGTATTTTTGGCTAAGCAGGCGGGCAGTGAGAAGAAGGTCTACAATAT GATTGACGTCTTGAAGGCGGGAGCCATGTAG back to top
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