NO03G04380.1, NO03G04380.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G04380.1
Unique NameNO03G04380.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1306
Alignment locationchr3:1262975..1264504 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1262975..1264504 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO03G04380.1 vs.
Match: EWM29805.1 (proteasome subunit alpha [Nannochloropsis gaditana])

HSP 1 Score: 125.2 bits (313), Expect = 4.200e-25
Identity = 64/81 (79.01%), Postives = 74/81 (91.36%), Query Frame = 0 
Query:   42 ASMGKEEARMYDRNLQHFSPEGRIYQVQYAERAARRGSPVVALSNGRDALALCVERRRASALEDDFMISQEKVGEIQEGAY 123
            +SMG+EEAR+YDRNLQHFSPEGRIYQVQYAE AARRG+PVVA+SN +DALALCVERRRASALE+   I+ EKVGEIQ+ A+
Sbjct:   64 SSMGQEEARLYDRNLQHFSPEGRIYQVQYAELAARRGNPVVAVSNNQDALALCVERRRASALEEP-GIAWEKVGEIQQAAW 143
The following BLAST results are available for this feature:
BLAST of NO03G04380.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29805.14.200e-2579.01proteasome subunit alpha [Nannochloropsis gaditana... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G04380NO03G04380Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G04380.1NO03G04380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G04380.1.cds1NO03G04380.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G04380.1.cds2NO03G04380.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G04380.1.cds3NO03G04380.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G04380.1 ID=NO03G04380.1|Name=NO03G04380.1|organism=Nannochloropsis oceanica|type=mRNA|length=1306bp
CTTTGCTTGCTTCTTGCCTCGTTCAGACCCCGCCGGAACTCACGATTCAC
GCGTCCGCACCCATACATGGCATAGCCACGGAGTACTGTTACCGAGCTTG
GCTTTTGGGAGCGGCTCCGTCTTTATCCTGCTCCCTGAATGACCCATTTA
CCTCGACGGATGATGATTGGAGAGCTCCATAGTGGAAGACGAGCTCGGAC
CTCCGTCCTTGCCACTCGCATCGTCCAGGCCGCCATTTTCATGCTACTTC
CTTGCGTAGGCGCGTCCATGGGAAAAGAAGAAGCTCGCATGTACGATCGA
AACTTGCAGCATTTTTCACCGGAAGGACGCATTTATCAGGTACAGTACGC
AGAGCGCGCTGCCCGCCGAGGCAGTCCTGTTGTTGCCTTGAGCAACGGCC
GGGATGCGCTAGCGCTATGCGTGGAACGACGCCGCGCCTCGGCATTAGAG
GATGACTTTATGATTTCCCAGGAGAAAGTAGGTGAGATTCAGGAGGGTGC
TTATCTCGGGTTTGCGGGCTTGGCGGCAGATGGACGACGGCTGTTGGATC
GAACGAGGTTATTTGCGGAGAATTACCGGTTGAAGCACGCGGAGTTACCA
GTTGTAAAAGACATGGCACTTTTTGTGGGAGATTTGCAACATCACAATAC
CTTTGTTCGTGCCCACCGTCCCTACGGCGTGTCGTGCGTTTTGGTGGGCA
TGAGCAGCAACATCATCATTCCCACAATTAGCCCTTGCAAACGTGCTAGC
GGTCCTTGTATATTTGCCACCGAACCCTCGGGGGCCGTGCAGGAATATCG
GGCTGTCTGCGTGGGGGAGAACGCGGAGACCATCACGATTCGTTTGGAGG
CCCATGCGGCTGATTTACCCGGAATGAACGTGGGACAACTCGCGCGATTT
GCCGCGCGCGTGTTGTGGGACGCCCGTGCTGCTCGTGCTGAGGCTGCCGG
TGATGGTTGGGAGAGAGAAGAAGGGAAAGAGGGAGAGGGAAAGGTGGAGT
TGGAGGTGTTGTTGTTGACGTGGGAGGGAGTGGAGGAACGGAAAGAAGAT
GGCGGGAGGGGCGCACAGGGGAAGGGTAAGGTGAGAACAAGGCGGCTGTT
TGTGAAGAGCATACAAGACATTGAGGCGCTCGGTAGGCTGTTGCATCTAA
GGAAGAAAGTGGTGGAGGGAACGCAGACAGAAGGAATGGAAGAGGGAGGG
CGGACAAAGAAAGGGTTGTGAGGGAGGTAGCAGGCAGTGTGCGAGAATAG
GGTGAGAAATAATGCGGAGTCATTGGATAAAAGTATGTACAGGAACAGTG
TTGGTG
back to top

protein sequence of NO03G04380.1

>NO03G04380.1-protein ID=NO03G04380.1-protein|Name=NO03G04380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=361bp
MTHLPRRMMIGELHSGRRARTSVLATRIVQAAIFMLLPCVGASMGKEEAR
MYDRNLQHFSPEGRIYQVQYAERAARRGSPVVALSNGRDALALCVERRRA
SALEDDFMISQEKVGEIQEGAYLGFAGLAADGRRLLDRTRLFAENYRLKH
AELPVVKDMALFVGDLQHHNTFVRAHRPYGVSCVLVGMSSNIIIPTISPC
KRASGPCIFATEPSGAVQEYRAVCVGENAETITIRLEAHAADLPGMNVGQ
LARFAARVLWDARAARAEAAGDGWEREEGKEGEGKVELEVLLLTWEGVEE
RKEDGGRGAQGKGKVRTRRLFVKSIQDIEALGRLLHLRKKVVEGTQTEGM
EEGGRTKKGL*
back to top

mRNA from alignment at chr3:1262975..1264504+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G04380.1 ID=NO03G04380.1|Name=NO03G04380.1|organism=Nannochloropsis oceanica|type=mRNA|length=1530bp|location=Sequence derived from alignment at chr3:1262975..1264504+ (Nannochloropsis oceanica)
CTTTGCTTGCTTCTTGCCTCGTTCAGACCCCGCCGGAACTCACGATTCAC
GCGTCCGCACCCATACATGGCATAGCCACGGAGTACTGTTACCGAGCTTG
GCTTTTGGGAGCGGCTCCGTCTTTATCCTGCTCCCTGAATGACCCATTTA
CCTCGACGGATGATGATTGGAGAGCTCCATAGTGGAAGACGAGCTCGGAC
CTCCGTCCTTGCCACTCGCATCGTCCAGGCCGCCATTTTCATGCTACTTC
CTTGCGTAGGCGCGTCCATGGGAAAAGAAGAAGCTCGCATGTACGATCGA
AACTTGCAGCATTTTTCACCGGAAGGACGCATTTATCAGGTAAGAGTAGC
AGTAGCCTCCTCTATGTCCTTCTCCATGACCTCCTCCTCTCTTCAAATTT
TTGTACCAGAAACCGTCATGCGCCCGACAACATATCACGTTCTTTCCTTG
AATCGCTTTGAAACATTACCCCCTGCCCTTCCTGTAGGTACAGTACGCAG
AGCGCGCTGCCCGCCGAGGCAGTCCTGTTGTTGCCTTGAGCAACGGCCGG
GATGCGCTAGCGCTATGCGTGGAACGACGCCGCGCCTCGGCATTAGAGGA
TGACTTTATGATTTCCCAGGAGAAAGTAGGTGAGATTCAGGAGGGTGCTT
ATCTCGGGTTTGCGGGCTTGGCGGCAGATGGACGACGGCTGTTGGATCGA
ACGAGGTTATTTGCGGAGAATTACCGGTTGAAGCACGCGGAGTTACCAGT
TGTAAAAGACATGGCACTTTTTGTGGGAGGTACGCAATGTGATGAGAGCC
TGGGAGGTTGATTTTAAAAGGCATTTGACAGCTAATATGCTCCTGCTCTC
AACAGATTTGCAACATCACAATACCTTTGTTCGTGCCCACCGTCCCTACG
GCGTGTCGTGCGTTTTGGTGGGCATGAGCAGCAACATCATCATTCCCACA
ATTAGCCCTTGCAAACGTGCTAGCGGTCCTTGTATATTTGCCACCGAACC
CTCGGGGGCCGTGCAGGAATATCGGGCTGTCTGCGTGGGGGAGAACGCGG
AGACCATCACGATTCGTTTGGAGGCCCATGCGGCTGATTTACCCGGAATG
AACGTGGGACAACTCGCGCGATTTGCCGCGCGCGTGTTGTGGGACGCCCG
TGCTGCTCGTGCTGAGGCTGCCGGTGATGGTTGGGAGAGAGAAGAAGGGA
AAGAGGGAGAGGGAAAGGTGGAGTTGGAGGTGTTGTTGTTGACGTGGGAG
GGAGTGGAGGAACGGAAAGAAGATGGCGGGAGGGGCGCACAGGGGAAGGG
TAAGGTGAGAACAAGGCGGCTGTTTGTGAAGAGCATACAAGACATTGAGG
CGCTCGGTAGGCTGTTGCATCTAAGGAAGAAAGTGGTGGAGGGAACGCAG
ACAGAAGGAATGGAAGAGGGAGGGCGGACAAAGAAAGGGTTGTGAGGGAG
GTAGCAGGCAGTGTGCGAGAATAGGGTGAGAAATAATGCGGAGTCATTGG
ATAAAAGTATGTACAGGAACAGTGTTGGTG
back to top

Coding sequence (CDS) from alignment at chr3:1262975..1264504+

>NO03G04380.1 ID=NO03G04380.1|Name=NO03G04380.1|organism=Nannochloropsis oceanica|type=CDS|length=1083bp|location=Sequence derived from alignment at chr3:1262975..1264504+ (Nannochloropsis oceanica)
ATGACCCATTTACCTCGACGGATGATGATTGGAGAGCTCCATAGTGGAAG
ACGAGCTCGGACCTCCGTCCTTGCCACTCGCATCGTCCAGGCCGCCATTT
TCATGCTACTTCCTTGCGTAGGCGCGTCCATGGGAAAAGAAGAAGCTCGC
ATGTACGATCGAAACTTGCAGCATTTTTCACCGGAAGGACGCATTTATCA
GGTACAGTACGCAGAGCGCGCTGCCCGCCGAGGCAGTCCTGTTGTTGCCT
TGAGCAACGGCCGGGATGCGCTAGCGCTATGCGTGGAACGACGCCGCGCC
TCGGCATTAGAGGATGACTTTATGATTTCCCAGGAGAAAGTAGGTGAGAT
TCAGGAGGGTGCTTATCTCGGGTTTGCGGGCTTGGCGGCAGATGGACGAC
GGCTGTTGGATCGAACGAGGTTATTTGCGGAGAATTACCGGTTGAAGCAC
GCGGAGTTACCAGTTGTAAAAGACATGGCACTTTTTGTGGGAGATTTGCA
ACATCACAATACCTTTGTTCGTGCCCACCGTCCCTACGGCGTGTCGTGCG
TTTTGGTGGGCATGAGCAGCAACATCATCATTCCCACAATTAGCCCTTGC
AAACGTGCTAGCGGTCCTTGTATATTTGCCACCGAACCCTCGGGGGCCGT
GCAGGAATATCGGGCTGTCTGCGTGGGGGAGAACGCGGAGACCATCACGA
TTCGTTTGGAGGCCCATGCGGCTGATTTACCCGGAATGAACGTGGGACAA
CTCGCGCGATTTGCCGCGCGCGTGTTGTGGGACGCCCGTGCTGCTCGTGC
TGAGGCTGCCGGTGATGGTTGGGAGAGAGAAGAAGGGAAAGAGGGAGAGG
GAAAGGTGGAGTTGGAGGTGTTGTTGTTGACGTGGGAGGGAGTGGAGGAA
CGGAAAGAAGATGGCGGGAGGGGCGCACAGGGGAAGGGTAAGGTGAGAAC
AAGGCGGCTGTTTGTGAAGAGCATACAAGACATTGAGGCGCTCGGTAGGC
TGTTGCATCTAAGGAAGAAAGTGGTGGAGGGAACGCAGACAGAAGGAATG
GAAGAGGGAGGGCGGACAAAGAAAGGGTTGTGA
back to top
Synonyms
Publications