NO03G03640.1, NO03G03640.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G03640.1
Unique NameNO03G03640.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1797
Alignment locationchr3:1080330..1082126 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1080330..1082126 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G03640.1 vs.
Match: EWM29789.1 (pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1 [Nannochloropsis gaditana])

HSP 1 Score: 689.1 bits (1777), Expect = 1.200e-194
Identity = 376/629 (59.78%), Postives = 454/629 (72.18%), Query Frame = 0 
Query:    1 MATKTSSNRAGR----LRYVILGGGIAGCTAAEELLAMLPPDCAEVTMVTATPIVKQVGKVVQVTRNLEEMKIIERDADAFGQDHANLRVVQARVTGLDVSKHTVECEGGICLPFDRCLICTGAVPKVHATHEHVVGIRDTESVQDLARRLETARRVLVLGNGGIALELVHEVTGCELVWAVKDPYVGNTFFDHTASGFVLPELEKRRPIRIIDNEYTK--GGTDGKNDPKKQ-QQQQQLQLP-------LLLQQQSAHVKEPPAVESIQA--------SPTGGALGPDWTVGLSTG-TGTPAACNPEANIKPPQAPSGKLLTILFRAEIEDLYESP--PAPSSTGNQDEDWVLWVHLTNGQVWGCDFVVSATGVMPSVSFLGPEFERGDDGGVLVNENMQTTASKDVYAAGDCCSMTWPESEVWFQMRLWTQARAMARYAARCMAGLVDELGSGFAFELFAHMTRFFGFKVALLGCFNAQLLKDEEQRRLVQEIQV-MPSLTMGGREERVKEDGGDRRGEDESMMGVLAPSMERGRKGGKEEGDAIAKETMS-----KDKVEILTRLTPGVEYIKVLLVGGRVKGAMLVGESTELAETFENLILNELDVSAFGVGLLDPDVDIDDYFD 599
            M ++TS    G      +YVI+GGGIAGCTAAE+LL ++ P+  +VT++TATPIVK VGKVVQVTR LE+M++++RDA+AFG++HANLR+VQA V  +DV  H +ECE    LPFDRCLICTGA PK+ + H HVVGIRDTESV+D+A RL+ ARRVLVLGNGGIALE VHEVT CELVWAVKD YVGNTFFDHTASG VLPELE RRP+ I+DN   K  GG D  +DP+    ++ +  +P          ++Q    K P  V   QA         P GG+LGP WT  LST  + + A    ++++  P     K LTILF AE+E+LYE+P  P  SS  + + +W L+V LT G  WGCDF+VSATGV+PSV FLGPEF RG+DGGV+VN+ MQTTAS DVYAAGDCCSMTWP SEVWFQMRLW+QARAMARYAARCM+  VD+LG+GFAFELFAHMTRFFGF VALLGCFNAQLL D EQRRL++E++V  P           K    +  GE ++    +  S +  RK G    +A+ +E        +D VEILTRLTPG EY+KV++VGGRVKGAM VGESTE AETFENLILNELDVSAFGV LL+PDVDIDD+FD
Sbjct:   15 MTSETSCKGPGEPNYCKQYVIVGGGIAGCTAAEDLLEIVSPEEVKVTLITATPIVKHVGKVVQVTRKLEDMEVVQRDANAFGEEHANLRIVQANVKSVDVHNHRIECENDSFLPFDRCLICTGAAPKIVSEHPHVVGIRDTESVKDVATRLKNARRVLVLGNGGIALEFVHEVTSCELVWAVKDAYVGNTFFDHTASGLVLPELESRRPVHIVDNLAVKNRGGEDRCDDPESYGDERVRKGIPSSNGSQAKCSERQPVGKKRPLPVALGQARHLPANRQGPLGGSLGPHWTADLSTSLSSSTAEKKADSSVTNP-----KPLTILFHAELEELYETPENPPTSSETSGEHEWPLYVRLTTGHTWGCDFLVSATGVVPSVDFLGPEFARGEDGGVVVNDRMQTTASPDVYAAGDCCSMTWPTSEVWFQMRLWSQARAMARYAARCMSDQVDDLGAGFAFELFAHMTRFFGFPVALLGCFNAQLLPDAEQRRLIREVEVAFPG----------KATQQEAVGEGQACSPNVQLSAQTRRKDG---SNALQREENGTTDRLQDHVEILTRLTPGKEYVKVVVVGGRVKGAMCVGESTESAETFENLILNELDVSAFGVDLLNPDVDIDDFFD 625
The following BLAST results are available for this feature:
BLAST of NO03G03640.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29789.11.200e-19459.78pyridine nucleotide-disulfide oxidoreductase domai... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G03640NO03G03640Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G03640.1NO03G03640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G03640.1.cds1NO03G03640.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G03640.1 ID=NO03G03640.1|Name=NO03G03640.1|organism=Nannochloropsis oceanica|type=mRNA|length=1797bp
ATGGCCACAAAGACATCATCAAATCGTGCAGGTCGGCTTAGGTATGTGAT
TTTGGGCGGGGGTATTGCCGGCTGCACGGCTGCAGAGGAGCTGCTTGCCA
TGCTGCCGCCGGATTGCGCCGAGGTGACCATGGTCACGGCTACCCCCATC
GTCAAGCAGGTGGGCAAGGTGGTGCAAGTCACGCGGAACTTGGAGGAGAT
GAAGATTATAGAACGGGACGCCGATGCCTTCGGGCAGGACCATGCCAACT
TGCGAGTGGTGCAAGCGCGCGTCACGGGGTTGGACGTGAGCAAACATACG
GTGGAATGCGAAGGGGGGATCTGCTTGCCCTTTGACCGGTGCTTGATCTG
CACGGGCGCTGTGCCAAAAGTGCATGCGACGCACGAGCACGTAGTTGGCA
TTCGTGACACGGAAAGCGTGCAGGACTTGGCCAGGCGCCTGGAGACGGCG
CGACGGGTGCTGGTGCTGGGCAATGGTGGAATTGCATTAGAGCTTGTGCA
TGAGGTCACAGGCTGCGAACTCGTGTGGGCCGTTAAGGATCCGTACGTAG
GCAACACCTTTTTTGACCACACGGCATCGGGATTCGTGCTGCCGGAGTTG
GAGAAGCGGCGGCCGATCCGCATTATCGACAACGAGTACACCAAAGGCGG
TACTGACGGAAAAAATGATCCGAAGAAACAGCAGCAGCAGCAGCAGCTGC
AACTACCACTACTACTACAACAACAGTCAGCGCACGTCAAGGAGCCACCA
GCTGTCGAGTCCATCCAAGCCAGTCCCACCGGCGGTGCCTTGGGTCCAGA
TTGGACAGTCGGTCTATCAACCGGCACCGGCACACCCGCCGCATGCAACC
CAGAGGCCAACATAAAGCCGCCCCAGGCTCCCTCTGGAAAGTTGCTCACC
ATCCTCTTCCGTGCCGAGATCGAAGATTTGTATGAATCACCCCCTGCTCC
TTCCTCCACAGGAAATCAAGACGAAGACTGGGTGCTGTGGGTACATCTGA
CGAACGGACAGGTTTGGGGGTGTGATTTCGTGGTGTCCGCTACCGGGGTT
ATGCCATCGGTTAGTTTTCTTGGTCCTGAATTTGAGCGAGGGGACGATGG
GGGGGTGTTGGTCAATGAAAATATGCAAACGACGGCGAGTAAGGATGTGT
ATGCGGCGGGGGACTGCTGCTCCATGACTTGGCCGGAGAGTGAGGTTTGG
TTTCAGATGAGACTGTGGACACAAGCGAGGGCCATGGCGAGGTATGCGGC
GAGGTGTATGGCGGGATTAGTGGATGAGCTAGGGTCAGGGTTTGCTTTTG
AGCTATTTGCGCATATGACGAGGTTTTTCGGGTTTAAGGTGGCGTTGTTG
GGCTGTTTCAATGCCCAGCTATTGAAGGATGAGGAGCAACGGCGGTTGGT
GCAAGAGATACAGGTGATGCCTTCTTTGACGATGGGAGGGAGGGAGGAAA
GGGTGAAGGAAGATGGGGGCGATAGAAGAGGGGAGGATGAGTCAATGATG
GGTGTATTGGCGCCATCGATGGAAAGGGGGAGGAAAGGTGGAAAGGAGGA
GGGGGATGCTATAGCAAAAGAGACGATGTCGAAAGACAAAGTTGAGATTT
TGACACGGTTGACGCCGGGGGTGGAGTATATCAAGGTGTTGCTGGTAGGT
GGAAGGGTGAAGGGTGCGATGCTGGTGGGAGAGAGCACAGAGCTGGCGGA
GACGTTCGAAAATTTGATTTTGAATGAGCTGGACGTAAGTGCTTTTGGGG
TGGGGTTGTTGGATCCGGATGTGGATATCGATGATTATTTTGATTAG
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protein sequence of NO03G03640.1

>NO03G03640.1-protein ID=NO03G03640.1-protein|Name=NO03G03640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=599bp
MATKTSSNRAGRLRYVILGGGIAGCTAAEELLAMLPPDCAEVTMVTATPI
VKQVGKVVQVTRNLEEMKIIERDADAFGQDHANLRVVQARVTGLDVSKHT
VECEGGICLPFDRCLICTGAVPKVHATHEHVVGIRDTESVQDLARRLETA
RRVLVLGNGGIALELVHEVTGCELVWAVKDPYVGNTFFDHTASGFVLPEL
EKRRPIRIIDNEYTKGGTDGKNDPKKQQQQQQLQLPLLLQQQSAHVKEPP
AVESIQASPTGGALGPDWTVGLSTGTGTPAACNPEANIKPPQAPSGKLLT
ILFRAEIEDLYESPPAPSSTGNQDEDWVLWVHLTNGQVWGCDFVVSATGV
MPSVSFLGPEFERGDDGGVLVNENMQTTASKDVYAAGDCCSMTWPESEVW
FQMRLWTQARAMARYAARCMAGLVDELGSGFAFELFAHMTRFFGFKVALL
GCFNAQLLKDEEQRRLVQEIQVMPSLTMGGREERVKEDGGDRRGEDESMM
GVLAPSMERGRKGGKEEGDAIAKETMSKDKVEILTRLTPGVEYIKVLLVG
GRVKGAMLVGESTELAETFENLILNELDVSAFGVGLLDPDVDIDDYFD*
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mRNA from alignment at chr3:1080330..1082126-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G03640.1 ID=NO03G03640.1|Name=NO03G03640.1|organism=Nannochloropsis oceanica|type=mRNA|length=1797bp|location=Sequence derived from alignment at chr3:1080330..1082126- (Nannochloropsis oceanica)
ATGGCCACAAAGACATCATCAAATCGTGCAGGTCGGCTTAGGTATGTGAT
TTTGGGCGGGGGTATTGCCGGCTGCACGGCTGCAGAGGAGCTGCTTGCCA
TGCTGCCGCCGGATTGCGCCGAGGTGACCATGGTCACGGCTACCCCCATC
GTCAAGCAGGTGGGCAAGGTGGTGCAAGTCACGCGGAACTTGGAGGAGAT
GAAGATTATAGAACGGGACGCCGATGCCTTCGGGCAGGACCATGCCAACT
TGCGAGTGGTGCAAGCGCGCGTCACGGGGTTGGACGTGAGCAAACATACG
GTGGAATGCGAAGGGGGGATCTGCTTGCCCTTTGACCGGTGCTTGATCTG
CACGGGCGCTGTGCCAAAAGTGCATGCGACGCACGAGCACGTAGTTGGCA
TTCGTGACACGGAAAGCGTGCAGGACTTGGCCAGGCGCCTGGAGACGGCG
CGACGGGTGCTGGTGCTGGGCAATGGTGGAATTGCATTAGAGCTTGTGCA
TGAGGTCACAGGCTGCGAACTCGTGTGGGCCGTTAAGGATCCGTACGTAG
GCAACACCTTTTTTGACCACACGGCATCGGGATTCGTGCTGCCGGAGTTG
GAGAAGCGGCGGCCGATCCGCATTATCGACAACGAGTACACCAAAGGCGG
TACTGACGGAAAAAATGATCCGAAGAAACAGCAGCAGCAGCAGCAGCTGC
AACTACCACTACTACTACAACAACAGTCAGCGCACGTCAAGGAGCCACCA
GCTGTCGAGTCCATCCAAGCCAGTCCCACCGGCGGTGCCTTGGGTCCAGA
TTGGACAGTCGGTCTATCAACCGGCACCGGCACACCCGCCGCATGCAACC
CAGAGGCCAACATAAAGCCGCCCCAGGCTCCCTCTGGAAAGTTGCTCACC
ATCCTCTTCCGTGCCGAGATCGAAGATTTGTATGAATCACCCCCTGCTCC
TTCCTCCACAGGAAATCAAGACGAAGACTGGGTGCTGTGGGTACATCTGA
CGAACGGACAGGTTTGGGGGTGTGATTTCGTGGTGTCCGCTACCGGGGTT
ATGCCATCGGTTAGTTTTCTTGGTCCTGAATTTGAGCGAGGGGACGATGG
GGGGGTGTTGGTCAATGAAAATATGCAAACGACGGCGAGTAAGGATGTGT
ATGCGGCGGGGGACTGCTGCTCCATGACTTGGCCGGAGAGTGAGGTTTGG
TTTCAGATGAGACTGTGGACACAAGCGAGGGCCATGGCGAGGTATGCGGC
GAGGTGTATGGCGGGATTAGTGGATGAGCTAGGGTCAGGGTTTGCTTTTG
AGCTATTTGCGCATATGACGAGGTTTTTCGGGTTTAAGGTGGCGTTGTTG
GGCTGTTTCAATGCCCAGCTATTGAAGGATGAGGAGCAACGGCGGTTGGT
GCAAGAGATACAGGTGATGCCTTCTTTGACGATGGGAGGGAGGGAGGAAA
GGGTGAAGGAAGATGGGGGCGATAGAAGAGGGGAGGATGAGTCAATGATG
GGTGTATTGGCGCCATCGATGGAAAGGGGGAGGAAAGGTGGAAAGGAGGA
GGGGGATGCTATAGCAAAAGAGACGATGTCGAAAGACAAAGTTGAGATTT
TGACACGGTTGACGCCGGGGGTGGAGTATATCAAGGTGTTGCTGGTAGGT
GGAAGGGTGAAGGGTGCGATGCTGGTGGGAGAGAGCACAGAGCTGGCGGA
GACGTTCGAAAATTTGATTTTGAATGAGCTGGACGTAAGTGCTTTTGGGG
TGGGGTTGTTGGATCCGGATGTGGATATCGATGATTATTTTGATTAG
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Coding sequence (CDS) from alignment at chr3:1080330..1082126-

>NO03G03640.1 ID=NO03G03640.1|Name=NO03G03640.1|organism=Nannochloropsis oceanica|type=CDS|length=1797bp|location=Sequence derived from alignment at chr3:1080330..1082126- (Nannochloropsis oceanica)
ATGGCCACAAAGACATCATCAAATCGTGCAGGTCGGCTTAGGTATGTGAT
TTTGGGCGGGGGTATTGCCGGCTGCACGGCTGCAGAGGAGCTGCTTGCCA
TGCTGCCGCCGGATTGCGCCGAGGTGACCATGGTCACGGCTACCCCCATC
GTCAAGCAGGTGGGCAAGGTGGTGCAAGTCACGCGGAACTTGGAGGAGAT
GAAGATTATAGAACGGGACGCCGATGCCTTCGGGCAGGACCATGCCAACT
TGCGAGTGGTGCAAGCGCGCGTCACGGGGTTGGACGTGAGCAAACATACG
GTGGAATGCGAAGGGGGGATCTGCTTGCCCTTTGACCGGTGCTTGATCTG
CACGGGCGCTGTGCCAAAAGTGCATGCGACGCACGAGCACGTAGTTGGCA
TTCGTGACACGGAAAGCGTGCAGGACTTGGCCAGGCGCCTGGAGACGGCG
CGACGGGTGCTGGTGCTGGGCAATGGTGGAATTGCATTAGAGCTTGTGCA
TGAGGTCACAGGCTGCGAACTCGTGTGGGCCGTTAAGGATCCGTACGTAG
GCAACACCTTTTTTGACCACACGGCATCGGGATTCGTGCTGCCGGAGTTG
GAGAAGCGGCGGCCGATCCGCATTATCGACAACGAGTACACCAAAGGCGG
TACTGACGGAAAAAATGATCCGAAGAAACAGCAGCAGCAGCAGCAGCTGC
AACTACCACTACTACTACAACAACAGTCAGCGCACGTCAAGGAGCCACCA
GCTGTCGAGTCCATCCAAGCCAGTCCCACCGGCGGTGCCTTGGGTCCAGA
TTGGACAGTCGGTCTATCAACCGGCACCGGCACACCCGCCGCATGCAACC
CAGAGGCCAACATAAAGCCGCCCCAGGCTCCCTCTGGAAAGTTGCTCACC
ATCCTCTTCCGTGCCGAGATCGAAGATTTGTATGAATCACCCCCTGCTCC
TTCCTCCACAGGAAATCAAGACGAAGACTGGGTGCTGTGGGTACATCTGA
CGAACGGACAGGTTTGGGGGTGTGATTTCGTGGTGTCCGCTACCGGGGTT
ATGCCATCGGTTAGTTTTCTTGGTCCTGAATTTGAGCGAGGGGACGATGG
GGGGGTGTTGGTCAATGAAAATATGCAAACGACGGCGAGTAAGGATGTGT
ATGCGGCGGGGGACTGCTGCTCCATGACTTGGCCGGAGAGTGAGGTTTGG
TTTCAGATGAGACTGTGGACACAAGCGAGGGCCATGGCGAGGTATGCGGC
GAGGTGTATGGCGGGATTAGTGGATGAGCTAGGGTCAGGGTTTGCTTTTG
AGCTATTTGCGCATATGACGAGGTTTTTCGGGTTTAAGGTGGCGTTGTTG
GGCTGTTTCAATGCCCAGCTATTGAAGGATGAGGAGCAACGGCGGTTGGT
GCAAGAGATACAGGTGATGCCTTCTTTGACGATGGGAGGGAGGGAGGAAA
GGGTGAAGGAAGATGGGGGCGATAGAAGAGGGGAGGATGAGTCAATGATG
GGTGTATTGGCGCCATCGATGGAAAGGGGGAGGAAAGGTGGAAAGGAGGA
GGGGGATGCTATAGCAAAAGAGACGATGTCGAAAGACAAAGTTGAGATTT
TGACACGGTTGACGCCGGGGGTGGAGTATATCAAGGTGTTGCTGGTAGGT
GGAAGGGTGAAGGGTGCGATGCTGGTGGGAGAGAGCACAGAGCTGGCGGA
GACGTTCGAAAATTTGATTTTGAATGAGCTGGACGTAAGTGCTTTTGGGG
TGGGGTTGTTGGATCCGGATGTGGATATCGATGATTATTTTGATTAG
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Synonyms
Publications