NO03G00590.1, NO03G00590.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G00590.1
Unique NameNO03G00590.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1493
Alignment locationchr3:192508..194543 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:192508..194543 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G00590.1 vs.
Match: EWM29487.1 (hypothetical protein Naga_100928g3 [Nannochloropsis gaditana])

HSP 1 Score: 230.3 bits (586), Expect = 7.000e-57
Identity = 127/177 (71.75%), Postives = 142/177 (80.23%), Query Frame = 0 
Query:   11 LLVLLPLLVHAF----RLPSTSTPPSS-----------LVPRAASPNDDESNSPPPTVVDRLFSLFFGAKEAKPLGFDRISVEKSPEVYPATTTKFADPVPGDSRDVAALRPLLAQTRLEKAKLNLIYDAAKDGWKKGDFHRKVDNRGASLVVARTRGGAVCGGYNPE-GWEGVGDE 172
            LL++LP++V+AF    R+PS+ T PSS           L+ R A+  DD    PP T+VD+LFSLFFGAKEAKPLGF RISVE SPEVYPATT+ FADP+PGDSRDVAALRPLLAQTRLEKA LNLIYDA +DGWKKGDFHRKVDNRGA+LVVARTRGGAVCGGYNPE G EG G E
Sbjct:   10 LLLVLPVVVYAFVSPARVPSSCTLPSSSIITATCLAPSLIHRLATSEDDPP-PPPTTLVDKLFSLFFGAKEAKPLGFARISVESSPEVYPATTSIFADPLPGDSRDVAALRPLLAQTRLEKAPLNLIYDAVRDGWKKGDFHRKVDNRGATLVVARTRGGAVCGGYNPEVGREGEGGE 185
The following BLAST results are available for this feature:
BLAST of NO03G00590.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29487.17.000e-5771.75hypothetical protein Naga_100928g3 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G00590NO03G00590Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G00590.1NO03G00590.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G00590.1.cds1NO03G00590.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00590.1.cds2NO03G00590.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00590.1.cds3NO03G00590.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00590.1.cds4NO03G00590.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G00590.1 ID=NO03G00590.1|Name=NO03G00590.1|organism=Nannochloropsis oceanica|type=mRNA|length=1493bp
GGGGGAGGAGGTTTAGGAAGAGGGGAGAAAAAATATCATACACGCACCGG
TTAGAATTTGATCAGACAAGACAATAATATACACTGGAGGCTTATCCACG
ACTCATGTCCGATCTCAAGAAAAAGAAGTGGCTCAACTCAACCAAAATTA
TAACAAAAAAAAAAGAGCAAGGCACCCTCGGCATCGCGGTACAGACTCGA
AGCCCCTTGATGAGAGAGGTTCTGGACGCTTATCGCTGATGCCTCCGCCG
CATTCGACCTTAGGCAGGTGTCCAGGTTGTGAATACATTGTATGCGTGCT
TGCCCGGGGCTGTATTTAGTGTCAAGTATGAGGAGGGCACATGAAGGAGA
CATCGCCATGCTCCATGCTCGCCTTTTGGAGAAGTCCCCCTTCAACCCAC
AACAGAAAACTCAGTAGAGAGCCTGATATGTCGACTTCTCACCGTATCCA
CCCTTCCCCCACAACACATAAGTGCAGGTCCTTTATAAATGAGGAACAAT
GCCCTTCTCATCCTTCCCCTCCTCGTCCTCCTTCCCCTCCTTGTCCATGC
TTTCCGCCTCCCATCCACTTCCACTCCACCCTCCTCCCTCGTACCTCGTG
CTGCCTCTCCTAACGACGACGAGTCCAATTCACCACCGCCCACGGTTGTA
GACCGACTTTTCTCCCTCTTCTTCGGTGCAAAAGAGGCCAAGCCCTTGGG
TTTTGATCGCATCAGCGTGGAGAAAAGTCCCGAGGTCTACCCGGCTACAA
CCACAAAATTTGCGGATCCCGTCCCCGGAGACAGTCGGGACGTCGCGGCC
CTTCGTCCTTTGCTTGCTCAAACGCGCCTTGAAAAAGCCAAGCTTAACCT
CATTTATGACGCTGCCAAGGACGGGTGGAAGAAAGGAGACTTTCACAGAA
AAGTAGACAATAGAGGAGCTTCCTTGGTGGTGGCCCGCACCAGGGGAGGG
GCAGTGTGTGGCGGATATAACCCGGAGGGCTGGGAAGGCGTAGGCGACGA
GCGTCAGTGCATCTCAGCCTTCCTCTTCACGTGGCCTCAGGGCAAGATGC
TGGCGGCTCGGCCCATTAAGTGCCCTAAGGTGGGCGGTGCCGACTACGCG
ATAGACGATAACCCGTCTCTGGCCTTGAAATTCGGCTACGAAGATTTCCT
CCTCAAGCTGACCACAGACAGGAAAGCCGTCAGTAAATTAGGGCTGGCAT
ACGCCAAGCTACCCGGAGGGGCTACGTCCCTCTTCGCGCCCTCAGAGGGC
AAGACGGCCGAGATCGTAGACTTGAAGGTGTATGCGCGGCAAGGAAGATG
AGAGAGGGAGGGATTTAGGGGGGAAGAAGATAGGCGTGCCTTAAGGGCAG
GATACTAGAGAGGGAAGGAGGCTGGGAGGGAGGGAGGGAGGGAGGGAGGA
GGGAGGAGGCTAGTATTGATTTAAGCACATAACAAATAAGAAAGGGAATA
TGACGAGGGAAGGGTTAAGCCACGCCGAAGCCACGCCGAAACC
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protein sequence of NO03G00590.1

>NO03G00590.1-protein ID=NO03G00590.1-protein|Name=NO03G00590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=271bp
MRNNALLILPLLVLLPLLVHAFRLPSTSTPPSSLVPRAASPNDDESNSPP
PTVVDRLFSLFFGAKEAKPLGFDRISVEKSPEVYPATTTKFADPVPGDSR
DVAALRPLLAQTRLEKAKLNLIYDAAKDGWKKGDFHRKVDNRGASLVVAR
TRGGAVCGGYNPEGWEGVGDERQCISAFLFTWPQGKMLAARPIKCPKVGG
ADYAIDDNPSLALKFGYEDFLLKLTTDRKAVSKLGLAYAKLPGGATSLFA
PSEGKTAEIVDLKVYARQGR*
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mRNA from alignment at chr3:192508..194543-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G00590.1 ID=NO03G00590.1|Name=NO03G00590.1|organism=Nannochloropsis oceanica|type=mRNA|length=2036bp|location=Sequence derived from alignment at chr3:192508..194543- (Nannochloropsis oceanica)
GGGGGAGGAGGTTTAGGAAGAGGGGAGAAAAAATATCATACACGCACCGG
TTAGAATTTGATCAGACAAGACAATAATATACACTGGAGGCTTATCCACG
ACTCATGTCCGATCTCAAGAAAAAGAAGTGGCTCAACTCAACCAAAATTA
TAACAAAAAAAAAAGAGCAAGGCACCCTCGGCATCGCGGTACAGACTCGA
AGCCCCTTGATGAGAGAGGTTCTGGACGCTTATCGCTGATGCCTCCGCCG
CATTCGACCTTAGGCAGGTGTCCAGGTTGTGAATACATTGTATGCGTGCT
TGCCCGGGGCTGTATTTAGTGTCAAGTATGAGGAGGGCACATGAAGGAGA
CATCGCCATGCTCCATGCTCGCCTTTTGGAGAAGTCCCCCTTCAACCCAC
AACAGAAAACTCAGTAGAGAGCCTGATATGTCGACTTCTCACCGTATCCA
CCCTTCCCCCACAACACATAAGTGCAGGTCCTTTATAAATGAGGAACAAT
GCCCTTCTCATCCTTCCCCTCCTCGTCCTCCTTCCCCTCCTTGTCCATGC
TTTCCGCCTCCCATCCACTTCCACTCCACCCTCCTCCCTCGTACCTCGTG
CTGCCTCTCCTAACGACGACGAGTCCAATTCACCACCGCCCACGGTTGTA
GACCGACTTTTCTCCCTCTTCTTCGGTGCAAAAGAGGCCAAGCCCTTGGG
TTTTGATCGCATCAGCGTGGAGAAAAGTCCCGAGGTCTACCCGGCTACAA
CCACAAAATTTGCGGATCCCGTCCCCGGAGACAGGTGTGGAAAGGATTGA
GGAATGAAAAAGAGGGGGCAGGCTGTTTTCGTTTTTAAATAATCGGCAAG
GGCACTTGCATACCTTTCACTTCTCAGGACTCTCTTTCTTCCCCTCACTC
CACAGTCGGGACGTCGCGGCCCTTCGTCCTTTGCTTGCTCAAACGCGCCT
TGAAAAAGCCAAGCTTAACCTCATTTATGACGCTGCCAAGGACGGGTGGA
AGAAAGGAGACTTTCACAGAAAAGTAGACAATAGAGGAGCTTCCTTGGTG
GTGGCCCGCACCAGGGGAGGGGCAGTGTGTGGCGGATATAACCCGGAGGT
ATGGAGGGATGGTGGGAAGAAGGGAGGGAGGAAGGACGGGCAGGGGAGGC
AGTCAAACACGTAATAATGACCTTCCAAAAACAAAATGGAGCCCTCCACA
AATCAACCACTCAATTTTCAATTCTTAACCTCCCCCTCTCTCCCACCCGC
CCTCCCTCCTTCATCCCGACCCCCCTCCACAGGGCTGGGAAGGCGTAGGC
GACGAGCGTCAGTGCATCTCAGCCTTCCTCTTCACGTGGCCTCAGGGCAA
GATGCTGGCGGCTCGGCCCATTAAGTGCCCTAAGGTGGGCGGTGCCGACT
ACGCGATAGACGATAACCCGTCTCTGGCCTTGAAATTCGGGTGCGCCTCT
TCTTCCCTCCCTCCCTCCCTACATCCTACATCCTCCCTCCCTCCCTCCCC
CCCTCCCTCCCTCCCTAGATCGCTCCCCCTTTCTCGTCCTTTCTTTCTTC
GTTTCTGTGGTCCAAAATCAATGACTGGCAGTAGCTCATTTTCCTCCCTT
CCTCCCTCTCTCTCTCCCTCCCTCCCTCCCTCCGTCTCTCCCTCCTCTCT
CTCTCCCTCCCTCCTTTGTCGTTGGCAGCTACGAAGATTTCCTCCTCAAG
CTGACCACAGACAGGAAAGCCGTCAGTAAATTAGGGCTGGCATACGCCAA
GCTACCCGGAGGGGCTACGTCCCTCTTCGCGCCCTCAGAGGGCAAGACGG
CCGAGATCGTAGACTTGAAGGTGTATGCGCGGCAAGGAAGATGAGAGAGG
GAGGGATTTAGGGGGGAAGAAGATAGGCGTGCCTTAAGGGCAGGATACTA
GAGAGGGAAGGAGGCTGGGAGGGAGGGAGGGAGGGAGGGAGGAGGGAGGA
GGCTAGTATTGATTTAAGCACATAACAAATAAGAAAGGGAATATGACGAG
GGAAGGGTTAAGCCACGCCGAAGCCACGCCGAAACC
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Coding sequence (CDS) from alignment at chr3:192508..194543-

>NO03G00590.1 ID=NO03G00590.1|Name=NO03G00590.1|organism=Nannochloropsis oceanica|type=CDS|length=813bp|location=Sequence derived from alignment at chr3:192508..194543- (Nannochloropsis oceanica)
ATGAGGAACAATGCCCTTCTCATCCTTCCCCTCCTCGTCCTCCTTCCCCT
CCTTGTCCATGCTTTCCGCCTCCCATCCACTTCCACTCCACCCTCCTCCC
TCGTACCTCGTGCTGCCTCTCCTAACGACGACGAGTCCAATTCACCACCG
CCCACGGTTGTAGACCGACTTTTCTCCCTCTTCTTCGGTGCAAAAGAGGC
CAAGCCCTTGGGTTTTGATCGCATCAGCGTGGAGAAAAGTCCCGAGGTCT
ACCCGGCTACAACCACAAAATTTGCGGATCCCGTCCCCGGAGACAGTCGG
GACGTCGCGGCCCTTCGTCCTTTGCTTGCTCAAACGCGCCTTGAAAAAGC
CAAGCTTAACCTCATTTATGACGCTGCCAAGGACGGGTGGAAGAAAGGAG
ACTTTCACAGAAAAGTAGACAATAGAGGAGCTTCCTTGGTGGTGGCCCGC
ACCAGGGGAGGGGCAGTGTGTGGCGGATATAACCCGGAGGGCTGGGAAGG
CGTAGGCGACGAGCGTCAGTGCATCTCAGCCTTCCTCTTCACGTGGCCTC
AGGGCAAGATGCTGGCGGCTCGGCCCATTAAGTGCCCTAAGGTGGGCGGT
GCCGACTACGCGATAGACGATAACCCGTCTCTGGCCTTGAAATTCGGCTA
CGAAGATTTCCTCCTCAAGCTGACCACAGACAGGAAAGCCGTCAGTAAAT
TAGGGCTGGCATACGCCAAGCTACCCGGAGGGGCTACGTCCCTCTTCGCG
CCCTCAGAGGGCAAGACGGCCGAGATCGTAGACTTGAAGGTGTATGCGCG
GCAAGGAAGATGA
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Synonyms
Publications