NO29G01780.2, NO29G01780.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO29G01780.2
Unique NameNO29G01780.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1669
Alignment locationchr29:563591..567188 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:563591..567188 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO29G01780.2 vs.
Match: XP_020775848.1 (N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D [Boleophthalmus pectinirostris])

HSP 1 Score: 298.1 bits (762), Expect = 4.600e-77
Identity = 160/413 (38.74%), Postives = 227/413 (54.96%), Query Frame = 0 
Query:   36 AGGGRAKRKEKASTSSRTSLTLQGLSFAFNKLRRHPTQAEGDKKSIGVRSSPVVMNGRFYNPWNTDAAMKSVKEFIELMMDRKGWPRMPPEELAELRETLILPPSLARSHLEAIHAHHRAMLTSPHGQNIRVSWMNHSTILVQMGGFNFLTDPIWGERCSPVSFAGPRRTFPPPHPLKDLPPIDFVLLSHNHYDHLDVSTLETL----GPDVTYYVPLGIKPWMERRGYHKCEEMSWWDEGTIRKTDADGHELSLTLACTPAQHWSSRNPFDRMKSLWCSWAVMTDETGKEEGKEDVPRQRFFFGGDSGYCPGFKEIGDEYGPFDVAAIPIGAYLPRWFMKDQHIDPQAALDVHHDIKAKQSFGIHWGTFPLAGDAWNEGPRELVQTRTDRGLADDSFFLLRPGESWEVGSER 445
            A GG  + +    +SSR S  L        +L    T++  DK            +GR+ NPW+T     S      L++D K   ++P +E  ++   ++ P  +    L            S  G  +RV+W+ H+T+LV+M G N LTDPI+ +R SP+ F GP+R   PP  ++ LP ID V++SH+HYDHLDV ++ +L    G ++ ++VPLG+  W+ + G     E+ WW+E  +   D       +T  CTP+QHWS R P+D  K+LW SW V+             P  RFFF GD+GYCP FKEIG  +GPFD+AAIPIGAY PR  M  QH+DP  A+ +H D++AKQS  IHWGTF LA + + E P  L +    +GL  +SFF+L  GES  V S +
Sbjct:   21 AEGGDVEPQTSRKSSSRKSFRLD------YRLEEEVTKSCRDK------------HGRWTNPWSTWRFPSSALLLRFLLLD-KDHSKVPNKEALDVELPVMEPFFIRTPDL------------SESGPGLRVTWLGHATVLVEMDGLNILTDPIFSQRASPIQFVGPKRYRGPPCTVEQLPRIDAVVISHSHYDHLDVGSVSSLNARFGAELRWFVPLGLMDWLVKMGCENVMELDWWEENCVPAHD------DVTFVCTPSQHWSKRTPYDDNKTLWGSWTVLG------------PEHRFFFAGDTGYCPTFKEIGQRFGPFDLAAIPIGAYQPRDVMVGQHVDPAEAVQIHEDLQAKQSVAIHWGTFALAHEYYLEPPVRLREALEQKGLKPESFFVLNHGESRLVSSSQ 384
The following BLAST results are available for this feature:
BLAST of NO29G01780.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
2004006008001000120014001600Expect = 4.60e-77 / Id = 38.74SequenceXP_020775848.1
Match NameE-valueIdentityDescription
XP_020775848.14.600e-7738.74N-acyl-phosphatidylethanolamine-hydrolyzing phosph... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO29G01780NO29G01780Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO29G01780.2NO29G01780.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO29G01780.2.cds1NO29G01780.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO29G01780.2.cds2NO29G01780.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO29G01780.2.cds3NO29G01780.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO29G01780.2.cds4NO29G01780.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO29G01780.2.cds5NO29G01780.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO29G01780.2.cds6NO29G01780.2.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO29G01780.2.cds7NO29G01780.2.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO29G01780.2.cds8NO29G01780.2.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO29G01780.2.cds9NO29G01780.2.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO29G01780.2.cds10NO29G01780.2.cds10Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO29G01780.2.cds11NO29G01780.2.cds11Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO29G01780.2 ID=NO29G01780.2|Name=NO29G01780.2|organism=Nannochloropsis oceanica|type=mRNA|length=1669bp
GGAGGCAGGGATGCCGGGGAGGGGTTGAAATGAAAAGAGCACAGCTCTGC
AAGGTACATGGTGTCCACCCATTCACAATGGCGTGTCCTTCATTCCTTCC
CTCCCCCTCTCGTTTTCTCCCTCTTTTCCTCCCACAGGCCCTTCGCTGCC
GCAGCTGCAGCAGCCGGCGGGGGTCGGGCCAAGCGAAAGGAGAAGGCATC
CACCTCTTCCCGCACCTCTTTGACTCTTCAGGGTCTCTCTTTTGCCTTCA
ATAAATTGCGACGGCACCCGACACAAGCAGAAGGCGACAAGAAGAGCATC
GGTGTGCGCTCGTCTCCCGTGGTCATGAACGGTCGGTTTTACAACCCCTG
GAACACGGACGCAGCCATGAAGAGTGTCAAGGAGTTCATCGAGCTCATGA
TGGACCGCAAAGGGTGGCCCCGAATGCCTCCCGAGGAACTGGCTGAGCTC
CGCGAGACCCTCATCCTCCCCCCCTCCCTCGCCCGCTCTCACCTGGAGGC
CATCCACGCCCACCATCGGGCCATGCTCACGTCCCCTCACGGACAGAACA
TCCGCGTCTCCTGGATGAATCACTCTACCATCCTCGTCCAAATGGGCGGC
TTCAACTTCCTCACGGATCCCATTTGGGGGGAGCGGTGTTCCCCTGTGTC
CTTTGCTGGCCCTCGTCGCACTTTCCCTCCTCCTCACCCCCTCAAGGACC
TGCCCCCCATCGATTTCGTCCTCCTCTCCCACAACCACTACGATCACCTG
GACGTCTCCACGCTCGAGACTCTCGGCCCTGACGTCACGTACTACGTCCC
TCTCGGCATCAAGCCGTGGATGGAACGCAGGGGTTACCACAAATGCGAGG
AAATGAGCTGGTGGGACGAAGGGACGATCCGCAAAACCGACGCCGACGGC
CACGAGCTTTCCCTCACCCTCGCCTGCACTCCCGCGCAACACTGGTCCTC
CCGGAACCCTTTCGACCGGATGAAGTCGCTTTGGTGCTCATGGGCAGTCA
TGACGGACGAGACCGGCAAGGAAGAGGGCAAGGAGGACGTGCCACGCCAA
CGCTTCTTCTTCGGCGGCGACTCCGGGTATTGTCCCGGCTTCAAGGAAAT
TGGAGATGAATATGGGCCCTTCGACGTGGCCGCCATCCCTATCGGCGCCT
ATCTCCCGCGGTGGTTCATGAAGGATCAGCACATCGACCCTCAGGCCGCC
CTCGACGTCCACCACGACATCAAGGCCAAGCAATCATTCGGCATCCATTG
GGGGACTTTCCCCCTCGCCGGCGACGCCTGGAACGAAGGCCCGCGAGAGC
TGGTTCAGACACGCACAGACAGGGGCCTCGCGGACGACTCCTTCTTCTTG
CTCCGGCCGGGAGAGAGTTGGGAAGTGGGCTCCGAAAGGGAGGGCTTCTT
GGAACACTTCAAAGAGGAGGAGAGGCGGCCTCTGAGCCACTAGTTGAAAG
GTGATGCAATTGCGATGCATTATCTAAGGAAGGCCTCGAAAACTTATGCA
TTGGTTGGTCTTCACTCGACGTGTTTCTGATGGGATGGCATCAACAGCTT
CCCTAGTGCTTGAGGCACGCTACCACTCCCTCCCTTTCCTTTCCCCACAG
CTTGTCCGATATTTTGAAATAGAAGAAGGAAGGGAAGTAAAAAAAAGAAG
CAAGACCGTCATTTCTTCA
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protein sequence of NO29G01780.2

>NO29G01780.2-protein ID=NO29G01780.2-protein|Name=NO29G01780.2|organism=Nannochloropsis oceanica|type=polypeptide|length=462bp
MVSTHSQWRVLHSFPPPLVFSLFSSHRPFAAAAAAAGGGRAKRKEKASTS
SRTSLTLQGLSFAFNKLRRHPTQAEGDKKSIGVRSSPVVMNGRFYNPWNT
DAAMKSVKEFIELMMDRKGWPRMPPEELAELRETLILPPSLARSHLEAIH
AHHRAMLTSPHGQNIRVSWMNHSTILVQMGGFNFLTDPIWGERCSPVSFA
GPRRTFPPPHPLKDLPPIDFVLLSHNHYDHLDVSTLETLGPDVTYYVPLG
IKPWMERRGYHKCEEMSWWDEGTIRKTDADGHELSLTLACTPAQHWSSRN
PFDRMKSLWCSWAVMTDETGKEEGKEDVPRQRFFFGGDSGYCPGFKEIGD
EYGPFDVAAIPIGAYLPRWFMKDQHIDPQAALDVHHDIKAKQSFGIHWGT
FPLAGDAWNEGPRELVQTRTDRGLADDSFFLLRPGESWEVGSEREGFLEH
FKEEERRPLSH*
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mRNA from alignment at chr29:563591..567188+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO29G01780.2 ID=NO29G01780.2|Name=NO29G01780.2|organism=Nannochloropsis oceanica|type=mRNA|length=3598bp|location=Sequence derived from alignment at chr29:563591..567188+ (Nannochloropsis oceanica)
GGAGGCAGGGATGCCGGGGAGGGGTTGAAATGAAAAGAGCACAGCTCTGC
AAGGTACATGGTGTCCACCCATTCACAATGGCGTGTCCTTCATTCCTTCC
CTCCCCCTCTCGTTTTCTCCCTCTTTTCCTCCCACAGGCCCTTCGCTGCC
GCAGCTGCAGCAGCCGGCGGGGGTCGGGCCAAGCGAAAGGAGAAGGCATC
CACCTCTTCCCGCACCTCTTTGACTCTTCAGGGTCTCTCTTTTGCCTTCA
ATAAATGTAAGGACGGAGGGAGGGAAGGCGGGACGGAGGGAGGAATGGAG
GGAAGGGGAATAGCAATCAGATGAAGAAGTACACTCACATTCTCCCCTCC
CTCCCTTCCTCCCTCCCTTCCAGTGCGACGGCACCCGACACAAGCAGAAG
GCGACAAGAAGAGCATCGGTGTGCGCTCGTCTCCCGTGGTCATGAACGGT
CGGTTTTACAACCCCTGGAACACGGACGCAGCCATGAAGAGTGTCAAGGA
GTTCATCGAGGTACGTCGTCCCTGCCCTCCCTCCCTCCTCCCCTCCCTCC
CCATCGTTCCCATTCGTCAATCATGGCTTACACGTCGCCATGTGATACTA
TCATCTCCTCATCCGACCCATCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCAGCTCATGATGGACCGCAAAGGGTGGCCCCGAATGCCTCCCGAG
GAACTGGCTGAGCTCCGCGAGACCCTCATCCTCCCCCCCTCCCTCGCCCG
CTCTCACCTGGAGGCCATCCACGCCCACCATCGGGCCATGCTCACGTCCC
CTCACGGACAGAACATCCGCGTCTCCTGGGTAAGCCCCTCCCTCCCTCCC
TCCCTCTCCCCCTCCCTCCCTCTTTCCCATTCCCTCTTTCCCTTTTCCCC
TCCCTCCCTCCCTCCCTTCACCCTCCCTCCCTCCCTCCCTCCTTCAGATG
AATCACTCTACCATCCTCGTCCAAATGGGCGGCTTCAACTTCCTCACGGA
TCCCATTTGGGGGGAGCGGTGTTCCCCTGTGTCCTTTGCTGGTAAGCCCT
AAGCCCTTCCTCCCTCTAGCCCTCCCTCCCTCTCTCTTTCCCTCCCAACG
GTCTGTCGAAGGTGCATTCCTATTCTCCACACCCTCCTTCCCTCCATCCT
TCCTTCCCTCCCTCCCTTCCTCCCGAGACATTGTGGAGGGAGAGCTGCTT
CCTTTCCTCTTTTACTTGGAAGCCTTTCCTCCCTCCCTCCCTCCGTCCGT
CCGTCCGTCCGTCCCTCCCTCCCTTTTGCTAGTTGTTTTCATCCATGCGC
CTATATCCCTCCCTCCCCTCTCCGCCCTCCATCAGGCCCTCGTCGCACTT
TCCCTCCTCCTCACCCCCTCAAGGACCTGCCCCCCATCGATTTCGTCCTC
CTCTCCCACAACCACTACGATCACCTGGACGTCTCCACGCTCGAGACTCT
CGGCCCTGACGTCACGTACTACGTCCCTCTCGGCATCAAGCCGTGGATGG
AACGCAGGGGTACGCCCTCCCTCCCTCCCTCCCTCCCTTCCTTCCTCTCT
CCCTCTTTCCCTCCTTCCCTTCCTCCACCCCTCGTCTCCCTCCCCTTTCT
CTTCTCTTTTCCTCCCTCCCTCCCTCCCTCACAGGTTACCACAAATGCGA
GGAAATGAGCTGGTGGGACGAAGGGACGATCCGCAAAACCGACGCCGACG
GCCACGAGCTTTCCCTCACCCTCGCCTGCACTCCCGCGCAACACTGGTGC
GTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTTCTTCCGTTGCT
CCGATCATGACGATGTGAACACACAGTCACCTTAAGTGTTTCTCATCCTC
CCTCCCTCTCTCCCTCTCTCCCTCCCTCCCTCCCTCAGGTCCTCCCGGAA
CCCTTTCGACCGGATGAAGTCGCTTTGGTGCTCATGGGCAGTCATGACGG
ACGAGACCGGCAAGGAAGAGGGCAAGGAGGACGTGCCACGCCAACGGTGC
GTCTTTTCCCCCCTCCTTCTTTCCCTCCCTCTATCCCTCCCTCCCTTCCT
CCCTCCCTCCCTCTAATGATCTTGAGGGTGATTGCAGACCAGAGCGTCAA
AGATCTACCGTTCCAACCATACGCTATCCCTCCCTCCATCCCTCCCCTTT
ACCCTCTCTTTCATGCCCTTCTTTCGACCCTGCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCAGCTTCTTCTTCGGCG
GCGACTCCGGGTATTGTCCCGGCTTCAAGGAAATTGGAGATGAATATGGG
CCCTTCGACGTGGCCGCCATCCCTATCGGTGCGTCCTTGCTCTCCCTCCC
TCCCTCCCTCCTTCATGCTTCTGTCTGTCTGATTTGCTGCTTCCTTCCCT
TTTTTCTTTCCGTCCTTTTTTCCCCATATCCCAATCAATCTTCTCCCATC
GTCTCGCTGAATTAATTCTCCCATATCCCAATCAATCTTCCCATCGTCTC
CTTAAATTAACTCCTGTCTTTATCTACCAGGCGCCTATCTCCCGCGGTGG
TTCATGAAGGATCAGCACATCGACCCTCAGGTATGCCCTCCCTCCCTCCC
TCCCTCCCTCTCTCCCGCCCTCCCTCCCTCCCGCCCTCCCTCCACTTCTC
CATCACTATCATTCCCAGCCCATTTAATCGAATTCCAACGGCCCCTGCAC
ATTCCCTCCCTCCTCCTCTCCCTCCCTCCCTCCGAGGCCGCCCTCGACGT
CCACCACGACATCAAGGCCAAGCAATCATTCGGCATCCATTGGGGGACTT
TCCCCCTCGCCGGCGACGCCTGGAACGAAGGCCCGCGAGAGCTGGTTCAG
ACACGCACAGACAGGTGTGTGACCTCCCTTCCGCCCTCCCGCCCTCCTCT
TCTCTTCCCCGTGGACGGTTTTGAGCGGTCTCACATATTGAACCGTGCAC
ACACTTGCAGAACCACAAAGTTCCTCTGTCTCACACACTTCAGCACGCAC
CCACACACCGTTACATTCCCATGTGCATATCTGAATGTCCCCTTCCGCTC
CTGCCCTCCTTCACATTCCCATGTGCATATCTGAATGTCCCCTTTCGCTC
CTGCCCTCTCCTGTCAGGGGCCTCGCGGACGACTCCTTCTTCTTGCTCCG
GCCGGGAGAGAGTTGGGAAGTGGGCTCCGAAAGGGAGGGCTTCTTGGAAC
ACTTCAAAGAGGAGGAGAGGCGGCCTCTGAGCCACTAGTTGAAAGGTAGG
GAGGAAGTAAGGGAGGGAAGGAGTAAGGGAGAGAGGAAGGGAAGAAGGAT
GGGGTAAAAAGTGTTGTGCCTCAAAGATTCTCTCACCCAGCCAGCCCTCC
CTCCCTCCTTCCCTTCCCTCCTGGTACAGGTGATGCAATTGCGATGCATT
ATCTAAGGAAGGCCTCGAAAACTTATGCATTGGTTGGTCTTCACTCGACG
TGTTTCTGATGGGATGGCATCAACAGCTTCCCTAGTGCTTGAGGCACGCT
ACCACTCCCTCCCTTTCCTTTCCCCACAGCTTGTCCGATATTTTGAAATA
GAAGAAGGAAGGGAAGTAAAAAAAAGAAGCAAGACCGTCATTTCTTCA
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Coding sequence (CDS) from alignment at chr29:563591..567188+

>NO29G01780.2 ID=NO29G01780.2|Name=NO29G01780.2|organism=Nannochloropsis oceanica|type=CDS|length=1386bp|location=Sequence derived from alignment at chr29:563591..567188+ (Nannochloropsis oceanica)
ATGGTGTCCACCCATTCACAATGGCGTGTCCTTCATTCCTTCCCTCCCCC
TCTCGTTTTCTCCCTCTTTTCCTCCCACAGGCCCTTCGCTGCCGCAGCTG
CAGCAGCCGGCGGGGGTCGGGCCAAGCGAAAGGAGAAGGCATCCACCTCT
TCCCGCACCTCTTTGACTCTTCAGGGTCTCTCTTTTGCCTTCAATAAATT
GCGACGGCACCCGACACAAGCAGAAGGCGACAAGAAGAGCATCGGTGTGC
GCTCGTCTCCCGTGGTCATGAACGGTCGGTTTTACAACCCCTGGAACACG
GACGCAGCCATGAAGAGTGTCAAGGAGTTCATCGAGCTCATGATGGACCG
CAAAGGGTGGCCCCGAATGCCTCCCGAGGAACTGGCTGAGCTCCGCGAGA
CCCTCATCCTCCCCCCCTCCCTCGCCCGCTCTCACCTGGAGGCCATCCAC
GCCCACCATCGGGCCATGCTCACGTCCCCTCACGGACAGAACATCCGCGT
CTCCTGGATGAATCACTCTACCATCCTCGTCCAAATGGGCGGCTTCAACT
TCCTCACGGATCCCATTTGGGGGGAGCGGTGTTCCCCTGTGTCCTTTGCT
GGCCCTCGTCGCACTTTCCCTCCTCCTCACCCCCTCAAGGACCTGCCCCC
CATCGATTTCGTCCTCCTCTCCCACAACCACTACGATCACCTGGACGTCT
CCACGCTCGAGACTCTCGGCCCTGACGTCACGTACTACGTCCCTCTCGGC
ATCAAGCCGTGGATGGAACGCAGGGGTTACCACAAATGCGAGGAAATGAG
CTGGTGGGACGAAGGGACGATCCGCAAAACCGACGCCGACGGCCACGAGC
TTTCCCTCACCCTCGCCTGCACTCCCGCGCAACACTGGTCCTCCCGGAAC
CCTTTCGACCGGATGAAGTCGCTTTGGTGCTCATGGGCAGTCATGACGGA
CGAGACCGGCAAGGAAGAGGGCAAGGAGGACGTGCCACGCCAACGCTTCT
TCTTCGGCGGCGACTCCGGGTATTGTCCCGGCTTCAAGGAAATTGGAGAT
GAATATGGGCCCTTCGACGTGGCCGCCATCCCTATCGGCGCCTATCTCCC
GCGGTGGTTCATGAAGGATCAGCACATCGACCCTCAGGCCGCCCTCGACG
TCCACCACGACATCAAGGCCAAGCAATCATTCGGCATCCATTGGGGGACT
TTCCCCCTCGCCGGCGACGCCTGGAACGAAGGCCCGCGAGAGCTGGTTCA
GACACGCACAGACAGGGGCCTCGCGGACGACTCCTTCTTCTTGCTCCGGC
CGGGAGAGAGTTGGGAAGTGGGCTCCGAAAGGGAGGGCTTCTTGGAACAC
TTCAAAGAGGAGGAGAGGCGGCCTCTGAGCCACTAG
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Synonyms
Publications