NO29G01660.2, NO29G01660.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO29G01660.2
Unique NameNO29G01660.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1725
Alignment locationchr29:521421..523553 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:521421..523553 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO29G01660.2 vs.
Match: EWM22729.1 (hypothetical protein Naga_100561g2 [Nannochloropsis gaditana]; EWM22730.1 hypothetical protein Naga_100561g2 [Nannochloropsis gaditana])

HSP 1 Score: 308.5 bits (789), Expect = 2.600e-80
Identity = 176/363 (48.48%), Postives = 232/363 (63.91%), Query Frame = 0 
Query:    1 MRFIASSRASLLLVATAAALCLPSAL--AHITVEDNFVDDAVREDILAQLP-EQTRFKHTLDLPGQLYQRILSVLHPSNTDLSLTETSVPTRGEGRFVSAHKDVFEDRSTVEGPVGLIYLEGDGRMLFQHEVTGEETVVDVRPGRLLSWDNSIYTHTLIPGDMPRRFLGPMAFRDGGMQSIGGPAPAPTPAPSPAPTPAPSPGVSVIAQAYTNTLSVSAGRIIRVTLNFMVLGMNPTRERTVRKLEDLDLVIGCVILDQ--ELRALGAHNKT-----NNANDNIAFKSSKLKPNFFKPKLTATETVEGG-LEWTLPSETTKILHPYKITWVVRVGKGAPSGTIIPIVVYVGNEWDTRLQVLVK 353
            M    SSR  LL +ATAA LCL S+   A I VEDNF+D+  R+ +LAQLP E  RFKHT+DLPG++Y+R+LSVLHP N+++  ++ + P +G+   V+AHKD FED S  +  VGL+YLEGDGRM  +++VTGEET++DV+PGR LSWDN  YTH L+ G MPRR LGPMAFRDGG QSIGG                       I QA  + L   AG+ +RVT + +VL   P RER VR L   D+V  C  LD     ++L A NKT     +  +  I+F  SK+ PN ++PK+T     EG  L WTLPS+ T++L  YKIT ++R+GK  PSGT+IP+ + V +EW+  L V+VK
Sbjct:    1 MPLFVSSRY-LLSIATAA-LCLTSSFSFAKIVVEDNFIDETTRDALLAQLPSEMHRFKHTVDLPGKVYKRLLSVLHPENSEVFPSQLTAPAKGQKGMVAAHKDTFEDSSLADRQVGLVYLEGDGRMQLKNDVTGEETIIDVKPGRFLSWDNRHYTHQLLAGSMPRRILGPMAFRDGGFQSIGG-----------------GDRNRFIIQARAHPLFARAGKTVRVTADLVVLDDQPGRERAVRALPTADIVFAC-SLDPFFNFQSLTAGNKTSKHRKDGTDVGISFSRSKIAPNTWRPKITYEIVDEGDTLVWTLPSDGTRLLKKYKITIIMRIGKNVPSGTMIPLYLSVPSEWEQELGVVVK 343
The following BLAST results are available for this feature:
BLAST of NO29G01660.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22729.12.600e-8048.48hypothetical protein Naga_100561g2 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO29G01660NO29G01660Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO29G01660.2NO29G01660.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO29G01660.2.cds1NO29G01660.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO29G01660.2.cds2NO29G01660.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO29G01660.2.cds3NO29G01660.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO29G01660.2 ID=NO29G01660.2|Name=NO29G01660.2|organism=Nannochloropsis oceanica|type=mRNA|length=1725bp
ATCACAGGCCTCACCAGCCTATCCATCTCCTTCTCTGCTGCTCTGCTGTT
CCTCCCACGACCTTAATTGTCAGAGCATCAATATAATAGAATCATGCGAT
TTATTGCCTCCTCTCGCGCATCCCTCCTGCTGGTCGCGACCGCTGCTGCC
CTCTGCCTCCCGTCGGCCCTCGCCCACATCACAGTGGAAGATAACTTCGT
CGACGATGCGGTGCGCGAGGACATTTTGGCCCAGCTACCGGAGCAAACCC
GGTTCAAGCACACCCTGGACTTGCCTGGCCAGCTCTATCAACGAATTCTG
TCCGTCCTCCACCCCAGCAACACCGATCTCTCTCTTACCGAGACTTCGGT
GCCTACCAGGGGGGAAGGCCGTTTTGTGTCCGCGCACAAGGACGTTTTCG
AAGATCGTTCAACAGTTGAAGGGCCCGTGGGGCTGATCTACCTGGAGGGG
GATGGCCGCATGCTCTTCCAGCATGAGGTGACTGGCGAAGAGACCGTGGT
AGATGTACGGCCTGGACGATTGCTTTCGTGGGACAACAGTATCTACACCC
ACACGCTCATTCCTGGGGATATGCCTCGTCGCTTTCTTGGGCCGATGGCG
TTTCGTGATGGAGGGATGCAGTCTATAGGTGGACCCGCACCCGCTCCCAC
CCCCGCGCCCTCCCCCGCACCTACCCCTGCGCCCTCCCCTGGTGTGAGTG
TTATTGCGCAAGCGTATACTAACACCTTGAGTGTGAGTGCTGGAAGGATC
ATAAGGGTGACACTCAACTTCATGGTCCTTGGTATGAATCCCACCCGCGA
GCGTACGGTGCGAAAGTTGGAGGACTTGGACCTGGTGATCGGGTGCGTCA
TCTTGGATCAGGAATTGCGAGCCCTCGGGGCGCACAACAAGACGAACAAT
GCCAACGATAATATCGCTTTCAAGTCTTCCAAGCTGAAGCCCAATTTCTT
CAAGCCAAAGTTGACCGCCACTGAGACAGTCGAGGGTGGTTTAGAGTGGA
CCCTCCCAAGTGAGACGACGAAGATCCTCCACCCGTACAAGATTACCTGG
GTTGTGCGTGTGGGGAAGGGCGCACCGTCCGGTACGATTATCCCTATCGT
AGTCTATGTGGGAAATGAGTGGGATACCAGGCTGCAGGTGCTGGTAAAGT
AGAAAGGGAGGAAGGAAGGGTGGAAGAGGAGGTGGCTGGAATTGTACTCT
GAATTTTCTGATGGATTGCAGGTATTAAGAGGAGAAGATAGAGGATGAAG
AGGAGAGGTACAGTTTGTGAAGCTATATCGTGAAAGGCATAAACCATAAA
ATGATCTACCTGAGATGATTAAATTTTCGACTGAAGTTCAATCATACAGG
CGGGGGGAGGATGCTCCACGCACGCGTTATTTTGGGGTTTGAGTATTCGA
TGAGCTAAGGAAGTGCGCATATGAGTGAGGAGCGAACAAGGAGAGAAGTA
GAGAAATAGAGAGACTTGCTTCGACGCATCTCTCTCGTACGTGCAGCTGT
TTTTTGAGGAAACCCATAAGAATGCCGAGGAAGCAAGGAGGAAGGGAAGG
AGGGAGGGAAGACATGTTTGATGCTCGGGATGGAGTTACCTTTCGGGGAA
GGAAACTCAGTCTCAGAAATTTGATCAAAGAACGATAAGAGATGGATTTG
GGAACCGACGAAAGAAATGACCCTTCACATGCAGGCGCAAATCAGGCTGC
GATTGTTTCGAAGGTATCTTTTATA
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protein sequence of NO29G01660.2

>NO29G01660.2-protein ID=NO29G01660.2-protein|Name=NO29G01660.2|organism=Nannochloropsis oceanica|type=polypeptide|length=353bp
MRFIASSRASLLLVATAAALCLPSALAHITVEDNFVDDAVREDILAQLPE
QTRFKHTLDLPGQLYQRILSVLHPSNTDLSLTETSVPTRGEGRFVSAHKD
VFEDRSTVEGPVGLIYLEGDGRMLFQHEVTGEETVVDVRPGRLLSWDNSI
YTHTLIPGDMPRRFLGPMAFRDGGMQSIGGPAPAPTPAPSPAPTPAPSPG
VSVIAQAYTNTLSVSAGRIIRVTLNFMVLGMNPTRERTVRKLEDLDLVIG
CVILDQELRALGAHNKTNNANDNIAFKSSKLKPNFFKPKLTATETVEGGL
EWTLPSETTKILHPYKITWVVRVGKGAPSGTIIPIVVYVGNEWDTRLQVL
VK*
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mRNA from alignment at chr29:521421..523553-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO29G01660.2 ID=NO29G01660.2|Name=NO29G01660.2|organism=Nannochloropsis oceanica|type=mRNA|length=2133bp|location=Sequence derived from alignment at chr29:521421..523553- (Nannochloropsis oceanica)
ATCACAGGCCTCACCAGCCTATCCATCTCCTTCTCTGCTGCTCTGCTGTT
CCTCCCACGACCTTAATTGTCAGAGCATCAATATAATAGAATCATGCGAT
TTATTGCCTCCTCTCGCGCATCCCTCCTGCTGGTCGCGACCGCTGCTGCC
CTCTGCCTCCCGTCGGCCCTCGCCCACATCACAGTGGAAGATAACTTCGT
CGACGATGCGGTGCGCGAGGACATTTTGGCCCAGCTACCGGAGCAAACCC
GGTTCAAGCACACCCTGGACTTGCCTGGCCAGCTCTATCAACGAATTCTG
TCCGTCCTCCACCCCAGCAACACCGATCTCTCTCTTACCGAGACTTCGGT
GCCTACCAGGGGGGAAGGCCGTTTTGTGTCCGCGCACAAGGACGTTTTCG
AAGATCGTTCAACAGTTGAAGGGCCCGTGGGGCTGATCTACCTGGAGGGG
GATGGCCGCATGCTCTTCCAGCATGAGGTGACTGGCGAAGAGACCGTGGT
AGATGTACGGCCTGGACGATTGCTTTCGTGGGACAACAGTATCTACACCC
ACACGCTCATTCCTGGGGATATGCCTCGTCGCTTTCTTGGGCCGATGGCG
TTTCGTGATGGAGGGATGCAGTCTATAGGTGGACCCGCACCCGCTCCCAC
CCCCGCGCCCTCCCCCGCACCTACCCCTGCGCCCTCCCCTGGTGTGAGTG
TTATTGCGCAAGCGTATACTAACACCTTGAGTGTGAGTGCTGGAAGGATC
ATAAGGGTGACACTCAACTTCATGGTCCTTGGTATGAATCCCACCCGCGA
GCGTACGGTGCGAAAGTTGGAGGACTTGGACCTGGTGATCGGGGTAAGGA
CGGAGAGGAATAAAAGAGAGGGTGAAAATGGCGGACGAGAGCAAGGGAGA
GTGGGAGGGAAGACTAAGATTGCTTCGCTTTTTGATAAGCATTACCACCA
GAGTCTGCTTAATGACCAAGCTTCGCTGTTCCTAACACTGCTCATCTCAT
TTCGCGTATCCTGTATCTTCCCATCCATCTATCCTGCACCCCTCCTTTTT
TCCCTTTCTCCCTCTCGTCACACCTCCCTCTAGTGCGTCATCTTGGATCA
GGAATTGCGAGCCCTCGGGGCGCACAACAAGACGAACAATGCCAACGATA
ATATCGCTTTCAAGTCTTCCAAGCTGAAGCCCAATTTCTTCAAGCCAAAG
TATGTATCTTCCCTTCAATCCTTCCTCTTTTTCGGTCGCTCCCTGTCAGA
CTGACCGGGACCTAAGAAAAAATACATGAATCGCGCCTTCCGGCAGGGAA
AGGCCAACCTATCACTTGCTGAAGTCATTGTCCCTCCGATCCTTCGATCC
CTCTTTCTTCCTTGTAGGTTGACCGCCACTGAGACAGTCGAGGGTGGTTT
AGAGTGGACCCTCCCAAGTGAGACGACGAAGATCCTCCACCCGTACAAGA
TTACCTGGGTTGTGCGTGTGGGGAAGGGCGCACCGTCCGGTACGATTATC
CCTATCGTAGTCTATGTGGGAAATGAGTGGGATACCAGGCTGCAGGTGCT
GGTAAAGTAGAAAGGGAGGAAGGAAGGGTGGAAGAGGAGGTGGCTGGAAT
TGTACTCTGAATTTTCTGATGGATTGCAGGTATTAAGAGGAGAAGATAGA
GGATGAAGAGGAGAGGTACAGTTTGTGAAGCTATATCGTGAAAGGCATAA
ACCATAAAATGATCTACCTGAGATGATTAAATTTTCGACTGAAGTTCAAT
CATACAGGCGGGGGGAGGATGCTCCACGCACGCGTTATTTTGGGGTTTGA
GTATTCGATGAGCTAAGGAAGTGCGCATATGAGTGAGGAGCGAACAAGGA
GAGAAGTAGAGAAATAGAGAGACTTGCTTCGACGCATCTCTCTCGTACGT
GCAGCTGTTTTTTGAGGAAACCCATAAGAATGCCGAGGAAGCAAGGAGGA
AGGGAAGGAGGGAGGGAAGACATGTTTGATGCTCGGGATGGAGTTACCTT
TCGGGGAAGGAAACTCAGTCTCAGAAATTTGATCAAAGAACGATAAGAGA
TGGATTTGGGAACCGACGAAAGAAATGACCCTTCACATGCAGGCGCAAAT
CAGGCTGCGATTGTTTCGAAGGTATCTTTTATA
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Coding sequence (CDS) from alignment at chr29:521421..523553-

>NO29G01660.2 ID=NO29G01660.2|Name=NO29G01660.2|organism=Nannochloropsis oceanica|type=CDS|length=1059bp|location=Sequence derived from alignment at chr29:521421..523553- (Nannochloropsis oceanica)
ATGCGATTTATTGCCTCCTCTCGCGCATCCCTCCTGCTGGTCGCGACCGC
TGCTGCCCTCTGCCTCCCGTCGGCCCTCGCCCACATCACAGTGGAAGATA
ACTTCGTCGACGATGCGGTGCGCGAGGACATTTTGGCCCAGCTACCGGAG
CAAACCCGGTTCAAGCACACCCTGGACTTGCCTGGCCAGCTCTATCAACG
AATTCTGTCCGTCCTCCACCCCAGCAACACCGATCTCTCTCTTACCGAGA
CTTCGGTGCCTACCAGGGGGGAAGGCCGTTTTGTGTCCGCGCACAAGGAC
GTTTTCGAAGATCGTTCAACAGTTGAAGGGCCCGTGGGGCTGATCTACCT
GGAGGGGGATGGCCGCATGCTCTTCCAGCATGAGGTGACTGGCGAAGAGA
CCGTGGTAGATGTACGGCCTGGACGATTGCTTTCGTGGGACAACAGTATC
TACACCCACACGCTCATTCCTGGGGATATGCCTCGTCGCTTTCTTGGGCC
GATGGCGTTTCGTGATGGAGGGATGCAGTCTATAGGTGGACCCGCACCCG
CTCCCACCCCCGCGCCCTCCCCCGCACCTACCCCTGCGCCCTCCCCTGGT
GTGAGTGTTATTGCGCAAGCGTATACTAACACCTTGAGTGTGAGTGCTGG
AAGGATCATAAGGGTGACACTCAACTTCATGGTCCTTGGTATGAATCCCA
CCCGCGAGCGTACGGTGCGAAAGTTGGAGGACTTGGACCTGGTGATCGGG
TGCGTCATCTTGGATCAGGAATTGCGAGCCCTCGGGGCGCACAACAAGAC
GAACAATGCCAACGATAATATCGCTTTCAAGTCTTCCAAGCTGAAGCCCA
ATTTCTTCAAGCCAAAGTTGACCGCCACTGAGACAGTCGAGGGTGGTTTA
GAGTGGACCCTCCCAAGTGAGACGACGAAGATCCTCCACCCGTACAAGAT
TACCTGGGTTGTGCGTGTGGGGAAGGGCGCACCGTCCGGTACGATTATCC
CTATCGTAGTCTATGTGGGAAATGAGTGGGATACCAGGCTGCAGGTGCTG
GTAAAGTAG
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Synonyms
Publications