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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr29 | genome | chr29:501908..504298 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO29G01590.1 vs.
Match: EWM21341.1 (fibronectin-binding a domain protein [Nannochloropsis gaditana]) HSP 1 Score: 941.0 bits (2431), Expect = 2.300e-270 Identity = 507/766 (66.19%), Postives = 596/766 (77.81%), Query Frame = 0
Query: 8 LLFFALLPTCLDAFVFTSSILP--RPPSRLASTSAVVVTPVAINAERQHLPRLQTLDYTTMVLVAQEMKEQLIPGRVENVIQQDDFSLLFQMRCVDAFTWLLVCWQPEAARVCLQKDGPNGIGGGDKKKKRGGRGGGGGGGGGGISGSALYSLPGQLKGFLQLKTLINVVIPLPGERIVVFEFADRLTDTTPTHKFVVEIMGRRSNVMLVDGNDDSVLACGYQVSPSKSVRSVSIGQRYTLPPPLTAPMPPPLPEDPEALRAYETEFLRRITLVPSYPLPKALISAYRGFSPQLVETMAAAVGVNEAGTTLVGKVAPEALERLVRGPLNHWVKVVVMRDARALADNKGGLNADRTRYTPILFDSQVGWRPVPSVLALIEGYYTAYLERQELRDLQRKGLSRVQAVLQRLQRTRQEFQRQLDAAAEEQVAKLQTKADLLTTYAYSWKEGDAECVCLDFDTGAEVRIPLKPGNSAADEAQAAYNRIRKLKRSVDAVLPLLQKIDLKVAYVEELESSIQQLGDEGIAGSAAADRYGMSI-RSRTLTQDLTVMREIAEELGIDGPGGSGSGTTTFFSTILNRLSLPGGEGQQENVAKKTKGNKKPTGRGKAGSSKGGKAKAKRGGSGGNAPASMAIQSFRPPALSDESSTPLKIYVGRNSKQNDYVTFTLARDHELWFHAQGVPGAHCLMRCDPGVEVSDANMQFAADLAAYFSKARGAGQVPVLWTSPKNLKRVVGGGPGMVQVSKEKVLWGRPSEGEQIVRKQEEDDN 771
L+ +P CL AF ++ LP +P + T + E+ RLQTLDYTT+ LVA E++E+L+PGRVENVIQQDDFSLL QMRCVD FTW+L+CWQPEAARVCLQ++GPN + RG GGG G+S S LYSLPGQLKGFLQLKTLINV +P+PGERI+VFEFADRLT + PTHK V+E+MGRRSNVMLVDG+ D VLACGYQVSP KSVR VSIGQRYT PPPLTAP+PPPLPED + AYE+EF+R ITLVPS+ LPKALISAYRGFSPQLV+ M + VG+ A TT VG ++ + L R RGP+ WV+++VMRD R +A ++ GL+ D RYTP+LF GW+PVPSVL L+E YYTA+L+RQELRDLQR+GL+RVQAV RLQRTRQEFQRQLDAAAEE+V+KLQTKA+LLTTYAYSWK+GD ECVC D DTG E+ IPLKPGNSAADEAQA Y RIRKLKRSVDA++PLLQKID+KVAYV+ELESSIQQLG SA +D ++ +RTL+QDL +MREIAEELGI+ G G +TTFFSTILNRLS+PG E + + +K NK+ + K K K + K SMAIQSFRPP++ S++ + +YVGRNSKQNDYVTF LARDHELWFHAQGVPGAHCLMR DPGVEVSDA+MQFAADLAAYFSKARG+GQVPV+WTSPK LKRVVGGGPGMV VSKEKVLWGRPS GE+IV + +ED+N
Sbjct: 10 LVLLHSIPNCLHAFASFTTRLPMYQPSGSILPVMTTAETTKLVRPEKPS--RLQTLDYTTLALVACELRERLLPGRVENVIQQDDFSLLLQMRCVDDFTWMLICWQPEAARVCLQRNGPND----SNRNSRGDGQSKRRGGGNGVS-STLYSLPGQLKGFLQLKTLINVTLPIPGERIMVFEFADRLTVSVPTHKLVIEVMGRRSNVMLVDGDTDIVLACGYQVSPLKSVRPVSIGQRYTYPPPLTAPLPPPLPEDQADMEAYESEFIRGITLVPSHSLPKALISAYRGFSPQLVDVMGSTVGIRNASTTPVGNLSRDVLVRFFRGPVVMWVRLIVMRDPRVVATSECGLSLDGKRYTPLLFHPGNGWQPVPSVLKLVEVYYTAFLKRQELRDLQRRGLNRVQAVQHRLQRTRQEFQRQLDAAAEEEVSKLQTKAELLTTYAYSWKQGDTECVCPDLDTGEEICIPLKPGNSAADEAQATYGRIRKLKRSVDAIMPLLQKIDVKVAYVDELESSIQQLGT-----SARSDEDTPNVLNTRTLSQDLAIMREIAEELGINCLDGRGGSSTTFFSTILNRLSVPGIEQSSLSNYQNSKNNKRKK-KDKPVRDKNKKIQGKSTDGAKKCAQSMAIQSFRPPSV--HSTSNVVVYVGRNSKQNDYVTFQLARDHELWFHAQGVPGAHCLMRIDPGVEVSDADMQFAADLAAYFSKARGSGQVPVIWTSPKYLKRVVGGGPGMVHVSKEKVLWGRPSRGEKIVLENDEDNN 760
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO29G01590.1 ID=NO29G01590.1|Name=NO29G01590.1|organism=Nannochloropsis oceanica|type=mRNA|length=2391bp
ATGGAGGGGCGTTACCTCCACCTCCTGTTCTTTGCCCTGCTTCCGACATG
TCTTGATGCCTTCGTCTTTACCTCCTCCATACTTCCCCGCCCACCATCAA
GACTAGCCTCGACCTCAGCCGTCGTCGTTACCCCTGTCGCCATCAATGCC
GAACGTCAACATCTCCCGCGACTCCAAACTCTGGACTATACCACGATGGT
ACTTGTGGCCCAAGAAATGAAAGAGCAGCTAATACCAGGCCGCGTCGAGA
ACGTCATCCAACAAGACGACTTCAGCCTCTTGTTCCAGATGCGGTGCGTG
GATGCCTTCACCTGGCTCTTGGTCTGTTGGCAGCCTGAGGCTGCACGAGT
ATGTCTGCAAAAGGATGGACCCAATGGCATTGGTGGCGGTGACAAGAAGA
AGAAGAGGGGGGGTCGGGGAGGGGGCGGTGGGGGCGGAGGCGGAGGAATC
TCGGGCTCGGCCTTGTACAGCCTCCCTGGTCAGCTTAAGGGCTTTCTGCA
GCTTAAGACGCTCATAAATGTGGTAATTCCACTTCCTGGGGAACGAATTG
TGGTTTTTGAATTTGCGGACCGTCTGACCGACACGACTCCCACGCACAAG
TTTGTGGTTGAGATCATGGGTCGGCGGAGCAACGTCATGCTTGTCGATGG
AAATGACGACTCTGTCCTTGCGTGTGGCTACCAGGTGTCGCCATCCAAGT
CCGTGCGCTCTGTTTCAATTGGTCAACGCTACACACTTCCGCCACCTCTC
ACTGCGCCAATGCCACCGCCCTTGCCCGAGGACCCAGAGGCTCTTCGGGC
TTACGAAACAGAGTTTCTGCGGCGGATAACGCTCGTGCCATCATACCCAT
TGCCCAAGGCCCTCATTTCAGCCTACCGTGGATTCAGTCCGCAACTTGTT
GAGACGATGGCCGCCGCGGTTGGCGTCAACGAAGCGGGCACCACGCTGGT
GGGCAAGGTGGCACCTGAAGCGCTCGAGCGCCTTGTCCGCGGACCGCTCA
ACCACTGGGTGAAAGTCGTCGTCATGCGCGACGCCCGGGCTCTAGCCGAT
AATAAGGGTGGACTCAATGCGGATAGGACGCGTTATACACCCATCTTGTT
CGATTCTCAAGTCGGGTGGCGGCCCGTGCCTTCTGTCCTAGCGCTGATCG
AAGGCTACTACACAGCTTATCTGGAACGGCAAGAGCTTCGGGACCTACAA
CGCAAGGGCCTCAGCCGAGTCCAGGCCGTGCTCCAGCGACTGCAACGTAC
TCGTCAGGAATTCCAGCGACAGCTCGATGCTGCGGCTGAGGAGCAGGTGG
CCAAGCTGCAGACCAAGGCGGATTTGCTCACCACGTATGCATACAGCTGG
AAGGAGGGCGACGCCGAGTGTGTGTGCTTGGATTTTGATACAGGGGCCGA
GGTTCGTATTCCTCTTAAGCCAGGAAACTCTGCGGCAGATGAGGCCCAAG
CTGCGTACAATCGGATTCGTAAGCTCAAGCGAAGTGTCGACGCCGTGTTG
CCCTTGTTGCAGAAGATTGATCTCAAAGTGGCCTACGTTGAGGAGCTGGA
GTCGAGCATTCAGCAGCTTGGGGACGAGGGGATTGCTGGGTCTGCAGCAG
CAGATAGATACGGGATGAGTATCCGCAGTCGCACTCTTACTCAAGATTTG
ACAGTGATGCGGGAGATCGCCGAGGAGCTGGGCATAGATGGGCCTGGTGG
CAGTGGAAGTGGGACGACGACTTTTTTTTCAACCATTCTTAATCGGCTCT
CCTTGCCGGGGGGCGAGGGGCAACAAGAGAATGTGGCAAAAAAAACTAAA
GGCAACAAAAAGCCGACAGGAAGAGGCAAAGCCGGCAGTAGTAAAGGCGG
AAAAGCCAAGGCAAAAAGAGGTGGGAGCGGTGGAAACGCGCCTGCAAGCA
TGGCCATCCAATCCTTCCGACCCCCAGCCTTGTCCGACGAATCGTCAACC
CCGCTTAAAATTTACGTTGGGCGCAACAGCAAGCAGAATGACTACGTTAC
CTTCACTCTGGCGCGCGACCACGAGCTTTGGTTCCACGCGCAGGGCGTCC
CAGGCGCACATTGTCTTATGCGCTGTGATCCCGGGGTAGAAGTCAGCGAC
GCCAATATGCAGTTCGCAGCGGATCTTGCCGCCTATTTTAGCAAGGCGCG
TGGGGCAGGCCAAGTGCCAGTGCTGTGGACTTCGCCAAAGAACCTCAAGC
GCGTTGTGGGTGGCGGGCCAGGCATGGTCCAAGTAAGTAAGGAGAAAGTA
CTGTGGGGCAGGCCTTCAGAAGGAGAACAGATTGTGCGAAAGCAGGAGGA
AGATGACAATGACAACAGCTAGTTATGCGCAATATGATTTGCACAAAACA
AGTAAAGTAATAAAAGTATCCAGGGTCAAACCGAAGAGCTC back to topprotein sequence of NO29G01590.1 >NO29G01590.1-protein ID=NO29G01590.1-protein|Name=NO29G01590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=774bp
MEGRYLHLLFFALLPTCLDAFVFTSSILPRPPSRLASTSAVVVTPVAINA
ERQHLPRLQTLDYTTMVLVAQEMKEQLIPGRVENVIQQDDFSLLFQMRCV
DAFTWLLVCWQPEAARVCLQKDGPNGIGGGDKKKKRGGRGGGGGGGGGGI
SGSALYSLPGQLKGFLQLKTLINVVIPLPGERIVVFEFADRLTDTTPTHK
FVVEIMGRRSNVMLVDGNDDSVLACGYQVSPSKSVRSVSIGQRYTLPPPL
TAPMPPPLPEDPEALRAYETEFLRRITLVPSYPLPKALISAYRGFSPQLV
ETMAAAVGVNEAGTTLVGKVAPEALERLVRGPLNHWVKVVVMRDARALAD
NKGGLNADRTRYTPILFDSQVGWRPVPSVLALIEGYYTAYLERQELRDLQ
RKGLSRVQAVLQRLQRTRQEFQRQLDAAAEEQVAKLQTKADLLTTYAYSW
KEGDAECVCLDFDTGAEVRIPLKPGNSAADEAQAAYNRIRKLKRSVDAVL
PLLQKIDLKVAYVEELESSIQQLGDEGIAGSAAADRYGMSIRSRTLTQDL
TVMREIAEELGIDGPGGSGSGTTTFFSTILNRLSLPGGEGQQENVAKKTK
GNKKPTGRGKAGSSKGGKAKAKRGGSGGNAPASMAIQSFRPPALSDESST
PLKIYVGRNSKQNDYVTFTLARDHELWFHAQGVPGAHCLMRCDPGVEVSD
ANMQFAADLAAYFSKARGAGQVPVLWTSPKNLKRVVGGGPGMVQVSKEKV
LWGRPSEGEQIVRKQEEDDNDNS* back to topmRNA from alignment at chr29:501908..504298- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO29G01590.1 ID=NO29G01590.1|Name=NO29G01590.1|organism=Nannochloropsis oceanica|type=mRNA|length=2391bp|location=Sequence derived from alignment at chr29:501908..504298- (Nannochloropsis oceanica)
ATGGAGGGGCGTTACCTCCACCTCCTGTTCTTTGCCCTGCTTCCGACATG
TCTTGATGCCTTCGTCTTTACCTCCTCCATACTTCCCCGCCCACCATCAA
GACTAGCCTCGACCTCAGCCGTCGTCGTTACCCCTGTCGCCATCAATGCC
GAACGTCAACATCTCCCGCGACTCCAAACTCTGGACTATACCACGATGGT
ACTTGTGGCCCAAGAAATGAAAGAGCAGCTAATACCAGGCCGCGTCGAGA
ACGTCATCCAACAAGACGACTTCAGCCTCTTGTTCCAGATGCGGTGCGTG
GATGCCTTCACCTGGCTCTTGGTCTGTTGGCAGCCTGAGGCTGCACGAGT
ATGTCTGCAAAAGGATGGACCCAATGGCATTGGTGGCGGTGACAAGAAGA
AGAAGAGGGGGGGTCGGGGAGGGGGCGGTGGGGGCGGAGGCGGAGGAATC
TCGGGCTCGGCCTTGTACAGCCTCCCTGGTCAGCTTAAGGGCTTTCTGCA
GCTTAAGACGCTCATAAATGTGGTAATTCCACTTCCTGGGGAACGAATTG
TGGTTTTTGAATTTGCGGACCGTCTGACCGACACGACTCCCACGCACAAG
TTTGTGGTTGAGATCATGGGTCGGCGGAGCAACGTCATGCTTGTCGATGG
AAATGACGACTCTGTCCTTGCGTGTGGCTACCAGGTGTCGCCATCCAAGT
CCGTGCGCTCTGTTTCAATTGGTCAACGCTACACACTTCCGCCACCTCTC
ACTGCGCCAATGCCACCGCCCTTGCCCGAGGACCCAGAGGCTCTTCGGGC
TTACGAAACAGAGTTTCTGCGGCGGATAACGCTCGTGCCATCATACCCAT
TGCCCAAGGCCCTCATTTCAGCCTACCGTGGATTCAGTCCGCAACTTGTT
GAGACGATGGCCGCCGCGGTTGGCGTCAACGAAGCGGGCACCACGCTGGT
GGGCAAGGTGGCACCTGAAGCGCTCGAGCGCCTTGTCCGCGGACCGCTCA
ACCACTGGGTGAAAGTCGTCGTCATGCGCGACGCCCGGGCTCTAGCCGAT
AATAAGGGTGGACTCAATGCGGATAGGACGCGTTATACACCCATCTTGTT
CGATTCTCAAGTCGGGTGGCGGCCCGTGCCTTCTGTCCTAGCGCTGATCG
AAGGCTACTACACAGCTTATCTGGAACGGCAAGAGCTTCGGGACCTACAA
CGCAAGGGCCTCAGCCGAGTCCAGGCCGTGCTCCAGCGACTGCAACGTAC
TCGTCAGGAATTCCAGCGACAGCTCGATGCTGCGGCTGAGGAGCAGGTGG
CCAAGCTGCAGACCAAGGCGGATTTGCTCACCACGTATGCATACAGCTGG
AAGGAGGGCGACGCCGAGTGTGTGTGCTTGGATTTTGATACAGGGGCCGA
GGTTCGTATTCCTCTTAAGCCAGGAAACTCTGCGGCAGATGAGGCCCAAG
CTGCGTACAATCGGATTCGTAAGCTCAAGCGAAGTGTCGACGCCGTGTTG
CCCTTGTTGCAGAAGATTGATCTCAAAGTGGCCTACGTTGAGGAGCTGGA
GTCGAGCATTCAGCAGCTTGGGGACGAGGGGATTGCTGGGTCTGCAGCAG
CAGATAGATACGGGATGAGTATCCGCAGTCGCACTCTTACTCAAGATTTG
ACAGTGATGCGGGAGATCGCCGAGGAGCTGGGCATAGATGGGCCTGGTGG
CAGTGGAAGTGGGACGACGACTTTTTTTTCAACCATTCTTAATCGGCTCT
CCTTGCCGGGGGGCGAGGGGCAACAAGAGAATGTGGCAAAAAAAACTAAA
GGCAACAAAAAGCCGACAGGAAGAGGCAAAGCCGGCAGTAGTAAAGGCGG
AAAAGCCAAGGCAAAAAGAGGTGGGAGCGGTGGAAACGCGCCTGCAAGCA
TGGCCATCCAATCCTTCCGACCCCCAGCCTTGTCCGACGAATCGTCAACC
CCGCTTAAAATTTACGTTGGGCGCAACAGCAAGCAGAATGACTACGTTAC
CTTCACTCTGGCGCGCGACCACGAGCTTTGGTTCCACGCGCAGGGCGTCC
CAGGCGCACATTGTCTTATGCGCTGTGATCCCGGGGTAGAAGTCAGCGAC
GCCAATATGCAGTTCGCAGCGGATCTTGCCGCCTATTTTAGCAAGGCGCG
TGGGGCAGGCCAAGTGCCAGTGCTGTGGACTTCGCCAAAGAACCTCAAGC
GCGTTGTGGGTGGCGGGCCAGGCATGGTCCAAGTAAGTAAGGAGAAAGTA
CTGTGGGGCAGGCCTTCAGAAGGAGAACAGATTGTGCGAAAGCAGGAGGA
AGATGACAATGACAACAGCTAGTTATGCGCAATATGATTTGCACAAAACA
AGTAAAGTAATAAAAGTATCCAGGGTCAAACCGAAGAGCTC back to topCoding sequence (CDS) from alignment at chr29:501908..504298- >NO29G01590.1 ID=NO29G01590.1|Name=NO29G01590.1|organism=Nannochloropsis oceanica|type=CDS|length=2322bp|location=Sequence derived from alignment at chr29:501908..504298- (Nannochloropsis oceanica)
ATGGAGGGGCGTTACCTCCACCTCCTGTTCTTTGCCCTGCTTCCGACATG
TCTTGATGCCTTCGTCTTTACCTCCTCCATACTTCCCCGCCCACCATCAA
GACTAGCCTCGACCTCAGCCGTCGTCGTTACCCCTGTCGCCATCAATGCC
GAACGTCAACATCTCCCGCGACTCCAAACTCTGGACTATACCACGATGGT
ACTTGTGGCCCAAGAAATGAAAGAGCAGCTAATACCAGGCCGCGTCGAGA
ACGTCATCCAACAAGACGACTTCAGCCTCTTGTTCCAGATGCGGTGCGTG
GATGCCTTCACCTGGCTCTTGGTCTGTTGGCAGCCTGAGGCTGCACGAGT
ATGTCTGCAAAAGGATGGACCCAATGGCATTGGTGGCGGTGACAAGAAGA
AGAAGAGGGGGGGTCGGGGAGGGGGCGGTGGGGGCGGAGGCGGAGGAATC
TCGGGCTCGGCCTTGTACAGCCTCCCTGGTCAGCTTAAGGGCTTTCTGCA
GCTTAAGACGCTCATAAATGTGGTAATTCCACTTCCTGGGGAACGAATTG
TGGTTTTTGAATTTGCGGACCGTCTGACCGACACGACTCCCACGCACAAG
TTTGTGGTTGAGATCATGGGTCGGCGGAGCAACGTCATGCTTGTCGATGG
AAATGACGACTCTGTCCTTGCGTGTGGCTACCAGGTGTCGCCATCCAAGT
CCGTGCGCTCTGTTTCAATTGGTCAACGCTACACACTTCCGCCACCTCTC
ACTGCGCCAATGCCACCGCCCTTGCCCGAGGACCCAGAGGCTCTTCGGGC
TTACGAAACAGAGTTTCTGCGGCGGATAACGCTCGTGCCATCATACCCAT
TGCCCAAGGCCCTCATTTCAGCCTACCGTGGATTCAGTCCGCAACTTGTT
GAGACGATGGCCGCCGCGGTTGGCGTCAACGAAGCGGGCACCACGCTGGT
GGGCAAGGTGGCACCTGAAGCGCTCGAGCGCCTTGTCCGCGGACCGCTCA
ACCACTGGGTGAAAGTCGTCGTCATGCGCGACGCCCGGGCTCTAGCCGAT
AATAAGGGTGGACTCAATGCGGATAGGACGCGTTATACACCCATCTTGTT
CGATTCTCAAGTCGGGTGGCGGCCCGTGCCTTCTGTCCTAGCGCTGATCG
AAGGCTACTACACAGCTTATCTGGAACGGCAAGAGCTTCGGGACCTACAA
CGCAAGGGCCTCAGCCGAGTCCAGGCCGTGCTCCAGCGACTGCAACGTAC
TCGTCAGGAATTCCAGCGACAGCTCGATGCTGCGGCTGAGGAGCAGGTGG
CCAAGCTGCAGACCAAGGCGGATTTGCTCACCACGTATGCATACAGCTGG
AAGGAGGGCGACGCCGAGTGTGTGTGCTTGGATTTTGATACAGGGGCCGA
GGTTCGTATTCCTCTTAAGCCAGGAAACTCTGCGGCAGATGAGGCCCAAG
CTGCGTACAATCGGATTCGTAAGCTCAAGCGAAGTGTCGACGCCGTGTTG
CCCTTGTTGCAGAAGATTGATCTCAAAGTGGCCTACGTTGAGGAGCTGGA
GTCGAGCATTCAGCAGCTTGGGGACGAGGGGATTGCTGGGTCTGCAGCAG
CAGATAGATACGGGATGAGTATCCGCAGTCGCACTCTTACTCAAGATTTG
ACAGTGATGCGGGAGATCGCCGAGGAGCTGGGCATAGATGGGCCTGGTGG
CAGTGGAAGTGGGACGACGACTTTTTTTTCAACCATTCTTAATCGGCTCT
CCTTGCCGGGGGGCGAGGGGCAACAAGAGAATGTGGCAAAAAAAACTAAA
GGCAACAAAAAGCCGACAGGAAGAGGCAAAGCCGGCAGTAGTAAAGGCGG
AAAAGCCAAGGCAAAAAGAGGTGGGAGCGGTGGAAACGCGCCTGCAAGCA
TGGCCATCCAATCCTTCCGACCCCCAGCCTTGTCCGACGAATCGTCAACC
CCGCTTAAAATTTACGTTGGGCGCAACAGCAAGCAGAATGACTACGTTAC
CTTCACTCTGGCGCGCGACCACGAGCTTTGGTTCCACGCGCAGGGCGTCC
CAGGCGCACATTGTCTTATGCGCTGTGATCCCGGGGTAGAAGTCAGCGAC
GCCAATATGCAGTTCGCAGCGGATCTTGCCGCCTATTTTAGCAAGGCGCG
TGGGGCAGGCCAAGTGCCAGTGCTGTGGACTTCGCCAAAGAACCTCAAGC
GCGTTGTGGGTGGCGGGCCAGGCATGGTCCAAGTAAGTAAGGAGAAAGTA
CTGTGGGGCAGGCCTTCAGAAGGAGAACAGATTGTGCGAAAGCAGGAGGA
AGATGACAATGACAACAGCTAG back to top
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