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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr29 | genome | chr29:409759..412645 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO29G01290.1 vs.
Match: XP_002183997.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1]; EEC44666.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 198.7 bits (504), Expect = 4.400e-47 Identity = 130/344 (37.79%), Postives = 189/344 (54.94%), Query Frame = 0
Query: 126 HLVTTKGRGVSFEMLEPDFHDLSRKSSLSVAVVNVIATVVGGGTLSIPYAFMQCGWALGTFLLLTACLSCNFALYILVSCSRRTGKRSYQAIARHCFGPKVEMAILGLLILFLFLVLMAFMLLVRDTATD-LVEFLTGARLS------AIHSHYILAATLWLVFPLCLCRSLHALRHSCYLQLASVLLLTFFVIARSLQVNPSSSPSSPSFSPSRLSSLRAFPLHWTDALTAWPIFVLANMCTFNILPVHASLVDPTRARLKKVIGTSAACTFLLYLALGLSGYMYALEETKDDILNNFPSSDGLIFLGRLGLGATLFFSLPILLLPMREVTIELLGKLYRWTQ 463
H++ + + VS E+L+PD +RKSS VA++N++ATV GGG LS+P AF + G T L++ L+ + +LY+LV+C+RRTG RSY +A FG ++ L L L+A+ +LV+D T L+ + G +S S+ +LA L L PL L R LHALRH+CY+ S +LL V R+ Q S +++ + D L +PI VL C++NIL VHA L+ PTR ++K+VI S +L+ +GL GY+YA T D+IL NFP D + GR+G TL F LP++LLP RE + + W Q
Sbjct: 90 HVLLLREQQVSLELLKPDHSSQARKSSPMVAMINMVATVCGGGVLSLPLAFSKAGILPTTLLMIYGALTTDLSLYLLVACARRTGGRSYGDVAMAAFGSAAQVVTTVTLTTMLCGALIAYQVLVKDVWTPVLLTTVPGLSVSLGKLSDREASNLLLAGILLLAMPLLLKRDLHALRHTCYVGFGSCILLLVAVFFRAAQKIRHQSVH---------AAINWYSTDPADWLFCFPIVVLCFFCSYNILEVHAQLMHPTRLQIKRVIDHSMMICLVLFYTVGLCGYLYAGTATADNILLNFPFQDSAVLAGRIGFCFTLLFGLPLVLLPCREAALSIPAHWRAWRQ 424
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO29G01290.1 ID=NO29G01290.1|Name=NO29G01290.1|organism=Nannochloropsis oceanica|type=mRNA|length=1602bp ATGTCGTGGCAGCACATCGTCCACATCCCGCTGCCCTTGCCACGGCAGAT TCAAGAATTGCAAGGTCAGGAGGAAGAGGGCGAGGAGGAAGTAGACAGCG CCAGTGATTTTGAGGATGCCCTGGAGGAAGAAAAGGAGGAGGAGGATGAG GATGACGAGGGGAATGAGGAAGGGAATAGGGCAGGTTGCCTGATTTCTCC CACAGTCCCTTCATCCCGAGGGCGCTTCCTGGACGGCTGTATTGGAAGTA ATCTGCGAGGTCGGGGAAGGGGAGGTAGAGGAGGAGGGATGGGAAGGGGC TTCCCCCTCACTAGCAGCAGCGGCAACAGCAGCGTAGTCCCTCCCCCTCT CTTCTCTCACCAGGGGAATAGCACTCATTTAGTGACCACAAAAGGGCGGG GTGTGAGCTTTGAGATGCTTGAGCCTGACTTTCATGATTTATCGAGGAAG AGTTCGTTATCTGTTGCGGTGGTAAACGTGATCGCGACTGTCGTTGGTGG CGGCACTCTGTCCATCCCCTACGCCTTCATGCAGTGCGGCTGGGCGCTGG GCACCTTCCTCCTCTTGACCGCCTGCCTTTCTTGCAATTTCGCGCTCTAC ATCCTTGTCTCCTGCTCGAGGAGGACGGGAAAGAGGAGCTACCAAGCCAT TGCACGCCACTGCTTTGGCCCCAAGGTAGAGATGGCCATCCTTGGCCTCC TCATCCTCTTCCTCTTCCTCGTCCTTATGGCCTTCATGCTGCTTGTCCGA GACACCGCCACTGATCTAGTCGAGTTCCTTACAGGCGCGCGTCTCTCCGC GATCCACTCCCACTACATCCTGGCGGCCACCCTCTGGCTCGTATTCCCCC TCTGCTTGTGCCGCTCCCTGCACGCTCTCCGCCACAGCTGCTACCTGCAG CTGGCTTCAGTCCTCCTCCTCACCTTCTTCGTCATCGCCCGTTCTCTCCA GGTCAATCCCTCCTCCTCCCCTTCCTCCCCCTCCTTCTCCCCCTCCCGCC TCTCCTCCCTGCGGGCCTTCCCCCTGCACTGGACCGACGCCCTCACGGCG TGGCCCATCTTCGTGCTGGCGAACATGTGCACGTTCAATATTCTCCCTGT TCATGCCTCTCTGGTGGACCCCACCCGAGCGAGACTTAAGAAGGTCATCG GGACCTCGGCGGCCTGCACCTTCCTCCTCTACCTCGCGCTCGGACTGAGC GGGTACATGTACGCGCTCGAAGAGACGAAGGACGATATTCTCAACAACTT CCCCTCCTCGGACGGGCTGATCTTCCTGGGCCGCCTCGGGCTGGGGGCCA CGCTCTTTTTCTCCTTGCCCATCTTGCTGCTGCCCATGCGAGAGGTCACG ATCGAGCTACTTGGGAAGCTGTACCGTTGGACGCAAGGCAAGAAACGGAG AAGCGCCAACAGCAGCAACAGCAGCAGCAACAGCAGCACCAGCAATCAAA TAGGAGGTGGAAGTGGAGGAAGGGAGGGAGGGAAGGCGGGCGGCACACCT CGTCCGGTGGTCGTCGCCGTGGGGAATGAAAGTGGGGAGAAGGAGGGAGG GAGGAAGGAGGAGGAGGAGGGAGAGAGGCAGCCATTGTTGAATAATGGGT GA back to topprotein sequence of NO29G01290.1 >NO29G01290.1-protein ID=NO29G01290.1-protein|Name=NO29G01290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=534bp MSWQHIVHIPLPLPRQIQELQGQEEEGEEEVDSASDFEDALEEEKEEEDE DDEGNEEGNRAGCLISPTVPSSRGRFLDGCIGSNLRGRGRGGRGGGMGRG FPLTSSSGNSSVVPPPLFSHQGNSTHLVTTKGRGVSFEMLEPDFHDLSRK SSLSVAVVNVIATVVGGGTLSIPYAFMQCGWALGTFLLLTACLSCNFALY ILVSCSRRTGKRSYQAIARHCFGPKVEMAILGLLILFLFLVLMAFMLLVR DTATDLVEFLTGARLSAIHSHYILAATLWLVFPLCLCRSLHALRHSCYLQ LASVLLLTFFVIARSLQVNPSSSPSSPSFSPSRLSSLRAFPLHWTDALTA WPIFVLANMCTFNILPVHASLVDPTRARLKKVIGTSAACTFLLYLALGLS GYMYALEETKDDILNNFPSSDGLIFLGRLGLGATLFFSLPILLLPMREVT IELLGKLYRWTQGKKRRSANSSNSSSNSSTSNQIGGGSGGREGGKAGGTP RPVVVAVGNESGEKEGGRKEEEEGERQPLLNNG* back to topmRNA from alignment at chr29:409759..412645- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO29G01290.1 ID=NO29G01290.1|Name=NO29G01290.1|organism=Nannochloropsis oceanica|type=mRNA|length=2887bp|location=Sequence derived from alignment at chr29:409759..412645- (Nannochloropsis oceanica) ATGTCGTGGCAGCACATCGTCCACATCCCGCTGCCCTTGCCACGGCAGAT
TCAAGAATTGCAAGGTCAGGAGGAAGAGGGCGAGGAGGAAGTAGACAGCG
CCAGTGATTTTGAGGATGCCCTGGAGGAAGAAAAGGAGGAGGAGGATGAG
GATGACGAGGGGAATGAGGAAGGGAATAGGGCAGGTTGCCTGATTTCTCC
CACAGTCCCTTCATCCCGAGGGCGCTTCCTGGACGGCTGTATTGGAAGTA
ATCTGCGAGGTCGGGGAAGGGGAGGTAGAGGAGGAGGGATGGGAAGGGGC
TTCCCCCTCACTAGCAGCAGCGGCAACAGCAGCGTAGTCCCTCCCCCTCT
CTTCTCTCACCAGGGGAATAGCACTCATTTAGTGACCACAAAAGGGCGGG
GTGTGAGCTTTGAGATGCTTGAGCCTGACTTTCATGATTTATCGAGGAAG
AGTTCGTTATCTGTTGCGGTGGTAAACGTGATCGCGACTGTCGTTGGTAA
GGGGAGAGGAGAGAGGGGGGGAAGGGAAAGAGCTTAGTAGTCGTAAAGAT
GACAGTACGTGACATGATGTCGACATTACCCCCCCTCCCCTTCAGGTGGC
GGCACTCTGTCCATCCCCTACGCCTTCATGCAGTGCGGCTGGGCGCTGGG
CACCTTCCTCCTCTTGACCGCCTGCCTTTCTTGCAATTTCGCGCTCTACA
TCCTTGTCTCCTGCTCGAGGAGGACGGGAAAGAGGAGCTACCAAGCCATT
GCACGCCACTGCTTTGGTGCGTCCTCATTCCCTCCCTCCCTTCCTCCCTC
CCTCCCTTCCTCCGTCGTGCTTGCTCGTTTCTCCTTTTCTTTGAAATGTT
CATCTCCTCCCCTTCTACTTCCCCTCCTCCGTCAGGCCCCAAGGTAGAGA
TGGCCATCCTTGGCCTCCTCATCCTCTTCCTCTTCCTCGTCCTTATGGCC
TTCATGCTGCTTGTCCGAGACACCGCCACTGATCTAGGTAGGCCCTTCTT
GAACCGCTCCCTCCCTCCCGTCCTCCCGTCCTCCCTCGTTCTCGTATTTG
TCCTCGTCCTCATGGCCTCCATGCTGCTCGTTTGCGATACAGCCATAGAC
CAGGGAGAAAGGGAGGGAGGTAAGGAAGAAAAAAAGACGAGGATAATCTC
ATTTATTCCATCCCTCCTTCCCTTCCTCCCCCCCTCCCTTCCCCCCAGTC
GAGTTCCTTACAGGCGCGCGTCTCTCCGCGATCCACTCCCACTACATCCT
GGCGGCCACCCTCTGGCTCGTATTCCCCCTCTGCTTGTGCCGCTCCCTGC
ACGCTCTCCGCCACAGCTGCTACCTGCAGCTGGCTTCAGGTACACCCTAT
GGAAGGCAGAAAGGAACCTTCCCTCTCTCCCTCTCTCCCTTCCTTCCTCC
CTCCCTCCCTCCTTTCCTCCCACCTCCCTTTTTTCTCCCTCCTTTCTGGT
GGTGTGCCTGTCCATAAACTCCCACCTCTCTTCCTCCCATCCTCCCTCCC
TCCCTCCCTCCCTCTTCTCACCCTCTGCATCCATTTTCTGCAACATTAGA
GACCCACTCCTCTCCCCCCTCTTCCCTCCCTCCCTTCCCCCCGCCCTAGT
CCTCCTCCTCACCTTCTTCGTCATCGCCCGTTCTCTCCAGGTCAATCCCT
CCTCCTCCCCTTCCTCCCCCTCCTTCTCCCCCTCCCGCCTCTCCTCCCTG
CGGGCCTTCCCCCTGCACTGGACCGACGCCCTCACGGCGTGGCCCATCTT
CGTGCTGGCGAACATGTGGTAGGGAGGGAGGGAGGGAGGGAGGGAGAGAG
GGATCGGAGTGTGGCACTGTCGCCACTTGGGGCTTCAGCTGGACTCTCTT
TGCTTTCGTAATTCTGACTCCTCCCTCCCTCCCCCCCTCCCTCCCTCCCT
CCCTCTCCTAGCACGTTCAATATTCTCCCTGTTCATGCCTCTCTGGTGGA
CCCCACCCGAGCGAGACTTAAGAAGGTAAGGCCGGGAGGTAGGGAGGAAG
AGAAGGGTGGAAAAAAGGGAGAAATGCCATATTTTCCTCCCCTCCCGCCC
TCCTTCCCTCCCCCCCCCCTCAGGTCATCGGGACCTCGGCGGCCTGCACC
TTCCTCCTCTACCTCGCGCTCGGACTGAGCGGGTACATGTACGCGCTCGA
AGAGACGAAGGCAGGTGTAATCTTCCTGCCCTCCCTCCCTCCCTCCCTCC
TGGTGTACTGTGCTGCCCCTCTGGTCCGTCTTCGGGCGAGGAACCTCACT
CACTTTCCATCCTTCTTTCCCTCCCTCCCTCCCTCCCTCCCTCAGGACGA
TATTCTCAACAACTTCCCCTCCTCGGACGGGCTGATCTTCCTGGGCCGCC
TCGGGCTGGGGGCCACGCTCTTTTTCTCCTTGCCCATCTTGCTGCTGCCC
ATGCGAGAGGTTGGGCGGGGAGGGAGAGAGGGAGGGGAGGCGCGCGCGCG
TGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGCGCCAGCCTCTCAATCAGAAGTGGGACT
GTATCTACATCGTCTTAATGTTCCTGTCTCTATGATCCCCCTCCCTCCCC
CCCTCCCTCCCTCCCTTCCTCCCTGCCAGGTCACGATCGAGCTACTTGGG
AAGCTGTACCGTTGGACGCAAGGCAAGAAACGGAGAAGCGCCAACAGCAG
CAACAGCAGCAGCAACAGCAGCACCAGCAATCAAATAGGAGGTGGAAGTG
GAGGAAGGGAGGGAGGGAAGGCGGGCGGCACACCTCGTCCGGTGGTCGTC
GCCGTGGGGAATGAAAGTGGGGAGAAGGAGGGAGGGAGGAAGGAGGAGGA
GGAGGGAGAGAGGCAGCCATTGTTGAATAATGGGTGA back to topCoding sequence (CDS) from alignment at chr29:409759..412645- >NO29G01290.1 ID=NO29G01290.1|Name=NO29G01290.1|organism=Nannochloropsis oceanica|type=CDS|length=1602bp|location=Sequence derived from alignment at chr29:409759..412645- (Nannochloropsis oceanica) ATGTCGTGGCAGCACATCGTCCACATCCCGCTGCCCTTGCCACGGCAGAT TCAAGAATTGCAAGGTCAGGAGGAAGAGGGCGAGGAGGAAGTAGACAGCG CCAGTGATTTTGAGGATGCCCTGGAGGAAGAAAAGGAGGAGGAGGATGAG GATGACGAGGGGAATGAGGAAGGGAATAGGGCAGGTTGCCTGATTTCTCC CACAGTCCCTTCATCCCGAGGGCGCTTCCTGGACGGCTGTATTGGAAGTA ATCTGCGAGGTCGGGGAAGGGGAGGTAGAGGAGGAGGGATGGGAAGGGGC TTCCCCCTCACTAGCAGCAGCGGCAACAGCAGCGTAGTCCCTCCCCCTCT CTTCTCTCACCAGGGGAATAGCACTCATTTAGTGACCACAAAAGGGCGGG GTGTGAGCTTTGAGATGCTTGAGCCTGACTTTCATGATTTATCGAGGAAG AGTTCGTTATCTGTTGCGGTGGTAAACGTGATCGCGACTGTCGTTGGTGG CGGCACTCTGTCCATCCCCTACGCCTTCATGCAGTGCGGCTGGGCGCTGG GCACCTTCCTCCTCTTGACCGCCTGCCTTTCTTGCAATTTCGCGCTCTAC ATCCTTGTCTCCTGCTCGAGGAGGACGGGAAAGAGGAGCTACCAAGCCAT TGCACGCCACTGCTTTGGCCCCAAGGTAGAGATGGCCATCCTTGGCCTCC TCATCCTCTTCCTCTTCCTCGTCCTTATGGCCTTCATGCTGCTTGTCCGA GACACCGCCACTGATCTAGTCGAGTTCCTTACAGGCGCGCGTCTCTCCGC GATCCACTCCCACTACATCCTGGCGGCCACCCTCTGGCTCGTATTCCCCC TCTGCTTGTGCCGCTCCCTGCACGCTCTCCGCCACAGCTGCTACCTGCAG CTGGCTTCAGTCCTCCTCCTCACCTTCTTCGTCATCGCCCGTTCTCTCCA GGTCAATCCCTCCTCCTCCCCTTCCTCCCCCTCCTTCTCCCCCTCCCGCC TCTCCTCCCTGCGGGCCTTCCCCCTGCACTGGACCGACGCCCTCACGGCG TGGCCCATCTTCGTGCTGGCGAACATGTGCACGTTCAATATTCTCCCTGT TCATGCCTCTCTGGTGGACCCCACCCGAGCGAGACTTAAGAAGGTCATCG GGACCTCGGCGGCCTGCACCTTCCTCCTCTACCTCGCGCTCGGACTGAGC GGGTACATGTACGCGCTCGAAGAGACGAAGGACGATATTCTCAACAACTT CCCCTCCTCGGACGGGCTGATCTTCCTGGGCCGCCTCGGGCTGGGGGCCA CGCTCTTTTTCTCCTTGCCCATCTTGCTGCTGCCCATGCGAGAGGTCACG ATCGAGCTACTTGGGAAGCTGTACCGTTGGACGCAAGGCAAGAAACGGAG AAGCGCCAACAGCAGCAACAGCAGCAGCAACAGCAGCACCAGCAATCAAA TAGGAGGTGGAAGTGGAGGAAGGGAGGGAGGGAAGGCGGGCGGCACACCT CGTCCGGTGGTCGTCGCCGTGGGGAATGAAAGTGGGGAGAAGGAGGGAGG GAGGAAGGAGGAGGAGGAGGGAGAGAGGCAGCCATTGTTGAATAATGGGT GA back to top
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