NO29G01270.1, NO29G01270.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO29G01270.1
Unique NameNO29G01270.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1182
Alignment locationchr29:406226..407900 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:406226..407900 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO29G01270.1 vs.
Match: EWM21348.1 (solute carrier family 35 member b1 [Nannochloropsis gaditana])

HSP 1 Score: 637.5 bits (1643), Expect = 2.700e-179
Identity = 330/396 (83.33%), Postives = 352/396 (88.89%), Query Frame = 0 
Query:    1 MAVTSLTDLCFCGPKILLPFLGGAMVALVAVYADWALYKRANKSLGG---KDGKKVAGFSLEALPSELKLLICAGGIYASYLTFGVLQEQIFKYRGPQGERFTATLFLLWVQCLVNALFALCFMVGGSRSKQKIPLFNFGLTGTSYILAMLFSNEALKYVSYPTQALGKSCKMVPVMLFGVLIRGKKYRPVEYFCVFLVTLGITMFQMYGGKKKAAPAVGGH-GGKEEGGDSIYGVLLLLLSLVMDGVTGAVQDKLKTLCKPTVHEFMFYTNTAGVLVCSVLVVATGQFSEGLSFCMDHPALFSTMCWFSLTSALGQNFIFLTIKFFDALVLTTVTTTRKFFTILVSVVMYGHSLNNKQWLAVLLVFFGLSGEVYDKYEKKRKAQHAKALAGGVKK 393
            MA ++L DLC CGPKILLPFLGGA+ AL+AVYADWA++KR     G    K  K+  G SL+ALPSE+KLLICAGGIYASYLTFGVLQEQIFKYRGPQGERFTATLFLLWVQCLVNALFAL FM+ GSRS QKIPLFNFGLTGTSYILAMLFSNEALKYVSYPTQALGKSCKMVPVMLFGVLIRGKKYRP+EYFCVFLVTLGITMFQ+YGGKKK     GGH GGK E GDS+YGVLLLLLSLVMDGVTGAVQDKLKT+C+PTVHEFMFYTN AGVLVCSVLV+ TGQF +G  FC++HPALFSTM W SLTSALGQNFIFLTIK+FDALVLTTVTTTRKFFTILVSVVMYGH+LN+KQWLAVLLVF GLSGEVYDKYEKK KAQ AK    G KK
Sbjct:    1 MAGSTLKDLCVCGPKILLPFLGGAVAALIAVYADWAIFKRRAGPAGKGNEKQEKEKGGLSLDALPSEVKLLICAGGIYASYLTFGVLQEQIFKYRGPQGERFTATLFLLWVQCLVNALFALAFMLAGSRSSQKIPLFNFGLTGTSYILAMLFSNEALKYVSYPTQALGKSCKMVPVMLFGVLIRGKKYRPIEYFCVFLVTLGITMFQLYGGKKK-----GGHGGGKVEEGDSLYGVLLLLLSLVMDGVTGAVQDKLKTICRPTVHEFMFYTNMAGVLVCSVLVLPTGQFVQGTRFCLEHPALFSTMAWLSLTSALGQNFIFLTIKYFDALVLTTVTTTRKFFTILVSVVMYGHALNSKQWLAVLLVFCGLSGEVYDKYEKK-KAQRAKTALEGKKK 390
The following BLAST results are available for this feature:
BLAST of NO29G01270.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21348.12.700e-17983.33solute carrier family 35 member b1 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO29G01270NO29G01270Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO29G01270.1NO29G01270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO29G01270.1.cds1NO29G01270.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO29G01270.1.cds2NO29G01270.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO29G01270.1 ID=NO29G01270.1|Name=NO29G01270.1|organism=Nannochloropsis oceanica|type=mRNA|length=1182bp
ATGGCTGTAACCAGCCTCACGGACTTGTGTTTTTGCGGTCCCAAGATCCT
CCTTCCTTTCCTAGGAGGGGCGATGGTGGCCCTGGTGGCTGTCTACGCGG
ACTGGGCCTTGTACAAACGGGCCAATAAAAGCCTAGGCGGGAAGGACGGG
AAGAAAGTAGCAGGATTCAGCCTTGAGGCCCTGCCGAGCGAGCTCAAGCT
CCTGATTTGTGCCGGGGGGATTTACGCGTCTTATTTGACGTTTGGGGTGT
TGCAGGAGCAAATTTTTAAATACCGGGGGCCGCAGGGGGAGCGATTCACG
GCGACTTTATTTTTGCTGTGGGTTCAGTGTTTGGTGAATGCCTTGTTTGC
ACTTTGCTTTATGGTGGGCGGCTCGAGGAGCAAGCAGAAAATCCCCCTCT
TCAATTTCGGATTGACTGGCACGAGTTATATTCTGGCCATGCTCTTTTCC
AATGAGGCGCTGAAGTATGTATCGTATCCGACACAGGCCCTGGGCAAGAG
CTGCAAGATGGTGCCGGTCATGCTGTTTGGGGTGCTGATTCGCGGAAAGA
AATACCGGCCGGTGGAGTATTTCTGTGTGTTTTTGGTGACGCTGGGTATC
ACGATGTTTCAGATGTATGGCGGAAAGAAGAAGGCTGCTCCTGCCGTGGG
GGGTCACGGAGGGAAGGAGGAGGGAGGGGACTCGATTTACGGGGTGCTGC
TGCTGTTGCTGTCGCTGGTGATGGATGGGGTGACGGGCGCGGTCCAAGAC
AAGCTCAAGACGCTGTGCAAGCCCACGGTGCATGAGTTCATGTTCTACAC
CAACACGGCGGGTGTGCTGGTCTGTTCGGTCCTGGTGGTGGCCACGGGGC
AGTTCTCCGAGGGGCTATCTTTTTGCATGGATCACCCCGCCCTGTTCAGC
ACCATGTGCTGGTTCTCTCTCACCTCGGCGCTGGGCCAAAACTTCATCTT
TTTGACAATCAAATTTTTTGATGCTTTGGTCCTGACGACGGTGACGACGA
CAAGGAAATTCTTCACAATCTTGGTGAGTGTGGTCATGTACGGCCATAGC
CTGAACAATAAACAGTGGCTGGCGGTGCTGCTCGTCTTCTTCGGCTTGTC
GGGAGAGGTCTACGACAAATACGAAAAGAAGAGGAAGGCCCAGCACGCCA
AGGCACTTGCGGGGGGGGTAAAGAAGGAGTAG
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protein sequence of NO29G01270.1

>NO29G01270.1-protein ID=NO29G01270.1-protein|Name=NO29G01270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=394bp
MAVTSLTDLCFCGPKILLPFLGGAMVALVAVYADWALYKRANKSLGGKDG
KKVAGFSLEALPSELKLLICAGGIYASYLTFGVLQEQIFKYRGPQGERFT
ATLFLLWVQCLVNALFALCFMVGGSRSKQKIPLFNFGLTGTSYILAMLFS
NEALKYVSYPTQALGKSCKMVPVMLFGVLIRGKKYRPVEYFCVFLVTLGI
TMFQMYGGKKKAAPAVGGHGGKEEGGDSIYGVLLLLLSLVMDGVTGAVQD
KLKTLCKPTVHEFMFYTNTAGVLVCSVLVVATGQFSEGLSFCMDHPALFS
TMCWFSLTSALGQNFIFLTIKFFDALVLTTVTTTRKFFTILVSVVMYGHS
LNNKQWLAVLLVFFGLSGEVYDKYEKKRKAQHAKALAGGVKKE*
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mRNA from alignment at chr29:406226..407900+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO29G01270.1 ID=NO29G01270.1|Name=NO29G01270.1|organism=Nannochloropsis oceanica|type=mRNA|length=1675bp|location=Sequence derived from alignment at chr29:406226..407900+ (Nannochloropsis oceanica)
ATGGCTGTAACCAGCCTCACGGACTTGTGTTTTTGCGGTAAGTCTCAAGT
CAAATGCTCTCACTCCATCAATGAGCTGCTGTGTGAGGAAGGGATTGAAG
TTTGCATGGCAGCCACTGCAGCAACAGCCGCACCAGCACTGCTGCCTGCA
CGCTTGGTGGATGTGTTGGTGTGCTGGAGCCTGATGTGGCTGGAGCCTGT
TGCAAGCCAGGGTTTGAAAGCATGCAGCGATGGTTGTGCGTGGGCATAGC
TAGTGGTTGGGATCGGGGACAAAAGTCGTGGTGGTTGGGGACGGCCGGGC
TGCTGGACTGCTGCGGAGGCCACGACACGCGGACATGCACACATTTACCA
ACACACCCTCTCTACCACACAAACAAGGCCTTAAAGGCCATATGATTGGA
TCTCCCTCATCCTCACCCGGACTTGCGGGTATTTTCTCCCTCCGTCTGGG
AAAAACATTTGTGATTTTTTGGATTACGACAACTCTCACGCTCTCTCCGA
CACCATCCAACATAACCCGACAAATGAAAGGTCCCAAGATCCTCCTTCCT
TTCCTAGGAGGGGCGATGGTGGCCCTGGTGGCTGTCTACGCGGACTGGGC
CTTGTACAAACGGGCCAATAAAAGCCTAGGCGGGAAGGACGGGAAGAAAG
TAGCAGGATTCAGCCTTGAGGCCCTGCCGAGCGAGCTCAAGCTCCTGATT
TGTGCCGGGGGGATTTACGCGTCTTATTTGACGTTTGGGGTGTTGCAGGA
GCAAATTTTTAAATACCGGGGGCCGCAGGGGGAGCGATTCACGGCGACTT
TATTTTTGCTGTGGGTTCAGTGTTTGGTGAATGCCTTGTTTGCACTTTGC
TTTATGGTGGGCGGCTCGAGGAGCAAGCAGAAAATCCCCCTCTTCAATTT
CGGATTGACTGGCACGAGTTATATTCTGGCCATGCTCTTTTCCAATGAGG
CGCTGAAGTATGTATCGTATCCGACACAGGCCCTGGGCAAGAGCTGCAAG
ATGGTGCCGGTCATGCTGTTTGGGGTGCTGATTCGCGGAAAGAAATACCG
GCCGGTGGAGTATTTCTGTGTGTTTTTGGTGACGCTGGGTATCACGATGT
TTCAGATGTATGGCGGAAAGAAGAAGGCTGCTCCTGCCGTGGGGGGTCAC
GGAGGGAAGGAGGAGGGAGGGGACTCGATTTACGGGGTGCTGCTGCTGTT
GCTGTCGCTGGTGATGGATGGGGTGACGGGCGCGGTCCAAGACAAGCTCA
AGACGCTGTGCAAGCCCACGGTGCATGAGTTCATGTTCTACACCAACACG
GCGGGTGTGCTGGTCTGTTCGGTCCTGGTGGTGGCCACGGGGCAGTTCTC
CGAGGGGCTATCTTTTTGCATGGATCACCCCGCCCTGTTCAGCACCATGT
GCTGGTTCTCTCTCACCTCGGCGCTGGGCCAAAACTTCATCTTTTTGACA
ATCAAATTTTTTGATGCTTTGGTCCTGACGACGGTGACGACGACAAGGAA
ATTCTTCACAATCTTGGTGAGTGTGGTCATGTACGGCCATAGCCTGAACA
ATAAACAGTGGCTGGCGGTGCTGCTCGTCTTCTTCGGCTTGTCGGGAGAG
GTCTACGACAAATACGAAAAGAAGAGGAAGGCCCAGCACGCCAAGGCACT
TGCGGGGGGGGTAAAGAAGGAGTAG
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Coding sequence (CDS) from alignment at chr29:406226..407900+

>NO29G01270.1 ID=NO29G01270.1|Name=NO29G01270.1|organism=Nannochloropsis oceanica|type=CDS|length=1182bp|location=Sequence derived from alignment at chr29:406226..407900+ (Nannochloropsis oceanica)
ATGGCTGTAACCAGCCTCACGGACTTGTGTTTTTGCGGTCCCAAGATCCT
CCTTCCTTTCCTAGGAGGGGCGATGGTGGCCCTGGTGGCTGTCTACGCGG
ACTGGGCCTTGTACAAACGGGCCAATAAAAGCCTAGGCGGGAAGGACGGG
AAGAAAGTAGCAGGATTCAGCCTTGAGGCCCTGCCGAGCGAGCTCAAGCT
CCTGATTTGTGCCGGGGGGATTTACGCGTCTTATTTGACGTTTGGGGTGT
TGCAGGAGCAAATTTTTAAATACCGGGGGCCGCAGGGGGAGCGATTCACG
GCGACTTTATTTTTGCTGTGGGTTCAGTGTTTGGTGAATGCCTTGTTTGC
ACTTTGCTTTATGGTGGGCGGCTCGAGGAGCAAGCAGAAAATCCCCCTCT
TCAATTTCGGATTGACTGGCACGAGTTATATTCTGGCCATGCTCTTTTCC
AATGAGGCGCTGAAGTATGTATCGTATCCGACACAGGCCCTGGGCAAGAG
CTGCAAGATGGTGCCGGTCATGCTGTTTGGGGTGCTGATTCGCGGAAAGA
AATACCGGCCGGTGGAGTATTTCTGTGTGTTTTTGGTGACGCTGGGTATC
ACGATGTTTCAGATGTATGGCGGAAAGAAGAAGGCTGCTCCTGCCGTGGG
GGGTCACGGAGGGAAGGAGGAGGGAGGGGACTCGATTTACGGGGTGCTGC
TGCTGTTGCTGTCGCTGGTGATGGATGGGGTGACGGGCGCGGTCCAAGAC
AAGCTCAAGACGCTGTGCAAGCCCACGGTGCATGAGTTCATGTTCTACAC
CAACACGGCGGGTGTGCTGGTCTGTTCGGTCCTGGTGGTGGCCACGGGGC
AGTTCTCCGAGGGGCTATCTTTTTGCATGGATCACCCCGCCCTGTTCAGC
ACCATGTGCTGGTTCTCTCTCACCTCGGCGCTGGGCCAAAACTTCATCTT
TTTGACAATCAAATTTTTTGATGCTTTGGTCCTGACGACGGTGACGACGA
CAAGGAAATTCTTCACAATCTTGGTGAGTGTGGTCATGTACGGCCATAGC
CTGAACAATAAACAGTGGCTGGCGGTGCTGCTCGTCTTCTTCGGCTTGTC
GGGAGAGGTCTACGACAAATACGAAAAGAAGAGGAAGGCCCAGCACGCCA
AGGCACTTGCGGGGGGGGTAAAGAAGGAGTAG
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Synonyms
Publications