NO29G00790.1, NO29G00790.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO29G00790.1
Unique NameNO29G00790.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length357
Alignment locationchr29:296929..297744 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:296929..297744 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO29G00790.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO29G00790NO29G00790Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO29G00790.1NO29G00790.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO29G00790.1.cds1NO29G00790.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO29G00790.1.cds2NO29G00790.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO29G00790.1 ID=NO29G00790.1|Name=NO29G00790.1|organism=Nannochloropsis oceanica|type=mRNA|length=357bp
ATGACTCTTGCGTCTCCTGGTGCTAGAGGTGCTGCTGGCACTGCTGCTCA
TTGTGGAAAAAGACCTGGAGGAGGAGGGCGAGGAAGAGGAGGAGGGATGG
TGGTGCGAGTGAAGAGGTCGACGGTTGCCCCAGGTGGATGGGTCATGTCC
AATTTACCGCAGCAGCAGCAGCAACAACAATACCGACGGGGATTTTGGGA
GCGGAGAAGGATGAGAAAAGAGAGGGAGGAGGAGGAAGATGTAGAAGAGG
GAAGAATCGAGGGTTTCCGACCTCCATCAACGCTTCTGTCGCTGCCCTGG
CCAATGCAAGCACTACAACAACAACAACAACAACAACAGCAGCAGCAGTG
GTGGTAG
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protein sequence of NO29G00790.1

>NO29G00790.1-protein ID=NO29G00790.1-protein|Name=NO29G00790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=119bp
MTLASPGARGAAGTAAHCGKRPGGGGRGRGGGMVVRVKRSTVAPGGWVMS
NLPQQQQQQQYRRGFWERRRMRKEREEEEDVEEGRIEGFRPPSTLLSLPW
PMQALQQQQQQQQQQQWW*
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mRNA from alignment at chr29:296929..297744+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO29G00790.1 ID=NO29G00790.1|Name=NO29G00790.1|organism=Nannochloropsis oceanica|type=mRNA|length=816bp|location=Sequence derived from alignment at chr29:296929..297744+ (Nannochloropsis oceanica)
ATGACTCTTGCGTCTCCTGGTGCTAGAGGTGCTGCTGGCACTGCTGCTCA
TTGTGGAAAAAGACCTGGAGGAGGAGGGCGAGGAAGAGGAGGAGGGATGG
TGGTGCGAGTGAAGAGGTCGACGGTTGCCCCAGGTGGATGGGTCATGGTG
AGGGACAAGAGGGAGATGAAGAATGAGAACAGAGGGATAGTCAAGGAGGA
GGGAGGAGTTATGGGAGGAGGAGGAGCAGGAAATGATCTTGATCCCTCCC
TCCCTCCTTCCCTTCCTCCCTCCCTCCTTTCTGCCCTGTCTGGGTTCCCT
CCAGTCGGGATGAAGACGACTTCAAGAACGAAAGAAAGAGGAGGAGGAGC
AAGAAGAGAAAAACGAGGAGGAGGAGGCCCACTCCTTCCCTCCCTCCCCC
TTCCTTCCCTCCCTCCCTTCCCTCCCTCCCTTCCATCATCCCTTTCTTAC
GCCTTGTCGAGTCCAACTCCTCCTCCTGATAGAGAGGAGAAGGACGCAAA
AGAAGAAGGAGGAAGAGGAGAGGAAGGGGAGGAGGAGGGGCTTCGAGTTG
TTTGCCGTCGTCAATGAGACCGAGTGCTGTGAAACACTCTGCCACTACTG
CCCCAGTCCAATTTACCGCAGCAGCAGCAGCAACAACAATACCGACGGGG
ATTTTGGGAGCGGAGAAGGATGAGAAAAGAGAGGGAGGAGGAGGAAGATG
TAGAAGAGGGAAGAATCGAGGGTTTCCGACCTCCATCAACGCTTCTGTCG
CTGCCCTGGCCAATGCAAGCACTACAACAACAACAACAACAACAACAGCA
GCAGCAGTGGTGGTAG
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Coding sequence (CDS) from alignment at chr29:296929..297744+

>NO29G00790.1 ID=NO29G00790.1|Name=NO29G00790.1|organism=Nannochloropsis oceanica|type=CDS|length=357bp|location=Sequence derived from alignment at chr29:296929..297744+ (Nannochloropsis oceanica)
ATGACTCTTGCGTCTCCTGGTGCTAGAGGTGCTGCTGGCACTGCTGCTCA
TTGTGGAAAAAGACCTGGAGGAGGAGGGCGAGGAAGAGGAGGAGGGATGG
TGGTGCGAGTGAAGAGGTCGACGGTTGCCCCAGGTGGATGGGTCATGTCC
AATTTACCGCAGCAGCAGCAGCAACAACAATACCGACGGGGATTTTGGGA
GCGGAGAAGGATGAGAAAAGAGAGGGAGGAGGAGGAAGATGTAGAAGAGG
GAAGAATCGAGGGTTTCCGACCTCCATCAACGCTTCTGTCGCTGCCCTGG
CCAATGCAAGCACTACAACAACAACAACAACAACAACAGCAGCAGCAGTG
GTGGTAG
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Synonyms
Publications