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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr28 | genome | chr28:332628..335084 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO28G01040.1 vs.
Match: EWM20892.1 (peptidyl-prolyl cis-trans isomerase [Nannochloropsis gaditana]) HSP 1 Score: 351.3 bits (900), Expect = 1.800e-93 Identity = 162/178 (91.01%), Postives = 173/178 (97.19%), Query Frame = 0
Query: 1 MADPAVLEAVSRGNPVVFMDISIATRPAGRIKMELFRDVAPKTVENFRQFCTGEYRESGLPIGYKGSPFHRVIKDFMIQGGDFVKGDGTGLKSIYGDKFADEGFDLRHTGPGLLSMANSGPNSNGCQFFITCNKCEWLDGKHVVFGKVLDAASMLTVRKIENTDVKRLKVEVVECGEL 179
MADPAVLEAV+RGNPVVF+D+SIA RPAGRIKMELF+DV PKTVENFRQFCTGEYRE+GLP+GYKGSPFHRVIKDFMIQGGDF+KGDG+GLKSIYGDKFADE FDLRHTGPGLLSMANSGPN+NGCQFFITC+KCEWLDGKHVVFGKVLD ASMLTVRK+ENTDVKRLKVEV ECGEL
Sbjct: 1 MADPAVLEAVNRGNPVVFLDVSIANRPAGRIKMELFKDVVPKTVENFRQFCTGEYRETGLPLGYKGSPFHRVIKDFMIQGGDFMKGDGSGLKSIYGDKFADENFDLRHTGPGLLSMANSGPNTNGCQFFITCDKCEWLDGKHVVFGKVLDPASMLTVRKVENTDVKRLKVEVTECGEL 178
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO28G01040.1 ID=NO28G01040.1|Name=NO28G01040.1|organism=Nannochloropsis oceanica|type=mRNA|length=2205bp
AGGCACGCTCCCAAAACTACCATGGCGGACCCTGCTGTACTCGAAGCTGT
TTCCCGTGGGAACCCGGTGGTGTTCATGGACATTTCGATCGCTACACGGC
CTGCAGGCCGGATTAAGATGGAACTTTTCAGAGACGTGGCACCCAAGACT
GTGGAGAATTTCCGACAATTTTGCACGGGGGAATATAGGGAGAGTGGCTT
GCCGATCGGCTACAAGGGGTCGCCTTTTCATCGGGTGATTAAGGATTTTA
TGATTCAGGGCGGGGATTTTGTGAAGGGCGACGGCACGGGTTTGAAATCC
ATTTATGGCGACAAATTTGCAGACGAAGGCTTCGACCTGCGGCATACGGG
TCCCGGCCTCCTGAGCATGGCCAACAGCGGCCCCAACAGTAATGGGTGTC
AGTTTTTCATCACCTGCAACAAGTGCGAGTGGCTGGATGGGAAGCACGTG
GTTTTTGGAAAGGTGCTCGACGCGGCGTCCATGTTGACCGTTCGGAAGAT
CGAAAACACAGACGTAAAGCGCCTCAAGGTTGAGGTGGTCGAGTGCGGAG
AGCTGTAAGTAAGCATAGACATGACCTTGACGGCCAGGAGAAAATGACTG
TACAATAACAATCGCGACAACATTGACTCTAGTGAGTTTTTGGTAACGGT
TTGTGAAATGGCTAAAGAGGGTAGGGGGATGCGGGTACGTTCATCGAGGA
GAAGGAGGAGGAGGAGGAGGAGGGCGGAGGGAAGGAGGAGAAAGAAATGC
CATGAAATGATGCACAAATGTTAGAAGGGACACAAAGAATAAATAATGGA
AGGCAGGTAAAAAAATGCGTATAGAGAGCCTTGCGAACGTGATGATTTGC
TGCCTTTACGATTTGATTCGATTTTTCCAAGAGGCCAGAATAAGTAAAGA
TGTATATTTTTCGCACATGATGTAAATTTCTATTCCTACTTTTCTTTTTT
TCCTGTCGCAAAGTCTCCCAACCGATCTCTACTTTCCTATTCCGCTCACA
CTTGACCTCCCCGCTCGTGTCTCTCCACCTGTGTACACGGCTATGAAAAA
CATATTTCCATTCTCCTCCCCCGCCGCCACAATCACAGCTTTAGCTTCTG
ATCGATGTCATAGCCCACCATTTACACCATCACCATCTCTTCCTTGTCCT
CTCTGTCCGTCTTACCCTTCCCCCTCCTCCCCTGTCGCCATCAGGGACTC
AGCCATGCCCAGTACCGCCCCTAAACCCCTGTGCACATCAGCTTGAAAAT
TCCAAAAGATTGACCAAAATAAGGGCGGGCTACGCTTTGCCACCTCTTCT
ACCTTGACCGAGGGGTGGGTAGTGGTCGCTTTGCTGTAGTTTTTGGTACC
AGAAGAAGAGAGAGATACAAAGAGAGATGAGGAGTCTAGGACTGAATGCA
TAGAGCAGCCTCCTTCTTACCGTCGCTTCGTAGACTGTCTCCGCAAGACT
GCCGTCAACACAGCTGCCACCTCCTGCGTCTCGTAGTGTGGCACTTTGTC
CATGTACAACTTCTTATTGAGCCTATACTCCACCGCCATCGTCGTCCGTT
TTCCAGGACTCTCAAGCATGTCCACACTGACGGCACTTCCCCCGCTATCA
GCAGCCGCCAATCGCGCCGACGTCAGAAGTTGGTTGTGCATGGCCAAGCC
CAACTGTGCCATCCCTCCCCCTCCTCCACCTGCCGCTTCCATGTATTGCG
CAGCGATGCTTTCGGGATCAAAGGTCTCCCCGGTGTCTTTGTACGTCATG
ATGGTCTTGCTTAGCGTGGACTTATCCTTCTTCTGCTGCTGCGGCTTTTC
CTGCTTCTTAACACCTCCCACCTTCTCCTCCTCTTCCTCCCCCACACCGC
CATGGTCGCCGATTATGGCTTTCGTGGAGGGAGGAATCCACTCATCGTCG
CTTAAGTCCTCCACCGCCACGGATCGTTTGCTCACTTGCACTAGCGCGTG
GGCATCGCGCTTCGGGGCCCCCTTCGTACGGGGCATGTTTGCTCAGGGGC
TGTGAGGGGGGAGATGGGGGGAGGAGGTTGAATGGCCTGGACTGGACTTC
AGCTGAGTGAAAGCATGATCCTCGTCACTGCAGCAGGACGCATCACAGTG
AGTGTCGCACTATTGTTCTCGTGCGGTGGTGGGTCAAAAGAGATTTATTT
TTGGGATTGTGGAGGTAACTTGCTTGGCCCAACAAAAATATTTAGCATGC
ATTTT back to topprotein sequence of NO28G01040.1 >NO28G01040.1-protein ID=NO28G01040.1-protein|Name=NO28G01040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=179bp
MADPAVLEAVSRGNPVVFMDISIATRPAGRIKMELFRDVAPKTVENFRQF
CTGEYRESGLPIGYKGSPFHRVIKDFMIQGGDFVKGDGTGLKSIYGDKFA
DEGFDLRHTGPGLLSMANSGPNSNGCQFFITCNKCEWLDGKHVVFGKVLD
AASMLTVRKIENTDVKRLKVEVVECGEL* back to topmRNA from alignment at chr28:332628..335084+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO28G01040.1 ID=NO28G01040.1|Name=NO28G01040.1|organism=Nannochloropsis oceanica|type=mRNA|length=2457bp|location=Sequence derived from alignment at chr28:332628..335084+ (Nannochloropsis oceanica)
AGGCACGCTCCCAAAACTACCATGGCGGACCCTGCTGTACTCGAAGCTGT
TTCCCGTGGGAACCCGGTGGTGTTCATGGACATTTCGATCGCTACACGGC
CTGCAGGCCGGATTAAGATGGAACTTTTCAGAGACGTGGCACCCAAGACT
GTGGAGAATTTCCGACAATTTTGCACGGGGGAATATAGGGAGAGTGGCTT
GCCGATCGGCTACAAGGGGTCGCCTTTTCATCGGGTGATTAAGGATTTTA
TGATTCAGGTAGGCTTTTATTCATCATCATTTTCTCTGTGTCGGTCCATT
TACTTCATATATGTATTCATTTCACTTTTTTATTTATCATTCCTTCATTA
TTTATGTTGTTCATTACTACTACAGGTGGAGATTTTATGAAGGTCAACGA
CACGCATTGGAAGCTTTCTAGGAGAACACGTGCGCAAATGTTGGACTTTC
TTTCGTCTAACCCGTCGTCCCTCTCTCCCTCCCTCCCTCTCTCCCTCCCC
CTCGGTCCAGGGCGGGGATTTTGTGAAGGGCGACGGCACGGGTTTGAAAT
CCATTTATGGCGACAAATTTGCAGACGAAGGCTTCGACCTGCGGCATACG
GGTCCCGGCCTCCTGAGCATGGCCAACAGCGGCCCCAACAGTAATGGGTG
TCAGTTTTTCATCACCTGCAACAAGTGCGAGTGGCTGGATGGGAAGCACG
TGGTTTTTGGAAAGGTGCTCGACGCGGCGTCCATGTTGACCGTTCGGAAG
ATCGAAAACACAGACGTAAAGCGCCTCAAGGTTGAGGTGGTCGAGTGCGG
AGAGCTGTAAGTAAGCATAGACATGACCTTGACGGCCAGGAGAAAATGAC
TGTACAATAACAATCGCGACAACATTGACTCTAGTGAGTTTTTGGTAACG
GTTTGTGAAATGGCTAAAGAGGGTAGGGGGATGCGGGTACGTTCATCGAG
GAGAAGGAGGAGGAGGAGGAGGAGGGCGGAGGGAAGGAGGAGAAAGAAAT
GCCATGAAATGATGCACAAATGTTAGAAGGGACACAAAGAATAAATAATG
GAAGGCAGGTAAAAAAATGCGTATAGAGAGCCTTGCGAACGTGATGATTT
GCTGCCTTTACGATTTGATTCGATTTTTCCAAGAGGCCAGAATAAGTAAA
GATGTATATTTTTCGCACATGATGTAAATTTCTATTCCTACTTTTCTTTT
TTTCCTGTCGCAAAGTCTCCCAACCGATCTCTACTTTCCTATTCCGCTCA
CACTTGACCTCCCCGCTCGTGTCTCTCCACCTGTGTACACGGCTATGAAA
AACATATTTCCATTCTCCTCCCCCGCCGCCACAATCACAGCTTTAGCTTC
TGATCGATGTCATAGCCCACCATTTACACCATCACCATCTCTTCCTTGTC
CTCTCTGTCCGTCTTACCCTTCCCCCTCCTCCCCTGTCGCCATCAGGGAC
TCAGCCATGCCCAGTACCGCCCCTAAACCCCTGTGCACATCAGCTTGAAA
ATTCCAAAAGATTGACCAAAATAAGGGCGGGCTACGCTTTGCCACCTCTT
CTACCTTGACCGAGGGGTGGGTAGTGGTCGCTTTGCTGTAGTTTTTGGTA
CCAGAAGAAGAGAGAGATACAAAGAGAGATGAGGAGTCTAGGACTGAATG
CATAGAGCAGCCTCCTTCTTACCGTCGCTTCGTAGACTGTCTCCGCAAGA
CTGCCGTCAACACAGCTGCCACCTCCTGCGTCTCGTAGTGTGGCACTTTG
TCCATGTACAACTTCTTATTGAGCCTATACTCCACCGCCATCGTCGTCCG
TTTTCCAGGACTCTCAAGCATGTCCACACTGACGGCACTTCCCCCGCTAT
CAGCAGCCGCCAATCGCGCCGACGTCAGAAGTTGGTTGTGCATGGCCAAG
CCCAACTGTGCCATCCCTCCCCCTCCTCCACCTGCCGCTTCCATGTATTG
CGCAGCGATGCTTTCGGGATCAAAGGTCTCCCCGGTGTCTTTGTACGTCA
TGATGGTCTTGCTTAGCGTGGACTTATCCTTCTTCTGCTGCTGCGGCTTT
TCCTGCTTCTTAACACCTCCCACCTTCTCCTCCTCTTCCTCCCCCACACC
GCCATGGTCGCCGATTATGGCTTTCGTGGAGGGAGGAATCCACTCATCGT
CGCTTAAGTCCTCCACCGCCACGGATCGTTTGCTCACTTGCACTAGCGCG
TGGGCATCGCGCTTCGGGGCCCCCTTCGTACGGGGCATGTTTGCTCAGGG
GCTGTGAGGGGGGAGATGGGGGGAGGAGGTTGAATGGCCTGGACTGGACT
TCAGCTGAGTGAAAGCATGATCCTCGTCACTGCAGCAGGACGCATCACAG
TGAGTGTCGCACTATTGTTCTCGTGCGGTGGTGGGTCAAAAGAGATTTAT
TTTTGGGATTGTGGAGGTAACTTGCTTGGCCCAACAAAAATATTTAGCAT
GCATTTT back to topCoding sequence (CDS) from alignment at chr28:332628..335084+ >NO28G01040.1 ID=NO28G01040.1|Name=NO28G01040.1|organism=Nannochloropsis oceanica|type=CDS|length=537bp|location=Sequence derived from alignment at chr28:332628..335084+ (Nannochloropsis oceanica)
ATGGCGGACCCTGCTGTACTCGAAGCTGTTTCCCGTGGGAACCCGGTGGT
GTTCATGGACATTTCGATCGCTACACGGCCTGCAGGCCGGATTAAGATGG
AACTTTTCAGAGACGTGGCACCCAAGACTGTGGAGAATTTCCGACAATTT
TGCACGGGGGAATATAGGGAGAGTGGCTTGCCGATCGGCTACAAGGGGTC
GCCTTTTCATCGGGTGATTAAGGATTTTATGATTCAGGGCGGGGATTTTG
TGAAGGGCGACGGCACGGGTTTGAAATCCATTTATGGCGACAAATTTGCA
GACGAAGGCTTCGACCTGCGGCATACGGGTCCCGGCCTCCTGAGCATGGC
CAACAGCGGCCCCAACAGTAATGGGTGTCAGTTTTTCATCACCTGCAACA
AGTGCGAGTGGCTGGATGGGAAGCACGTGGTTTTTGGAAAGGTGCTCGAC
GCGGCGTCCATGTTGACCGTTCGGAAGATCGAAAACACAGACGTAAAGCG
CCTCAAGGTTGAGGTGGTCGAGTGCGGAGAGCTGTAA back to top
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