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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr28 | genome | chr28:288184..290661 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO28G00870.1 vs.
Match: EWM20928.1 (carrier protein [Nannochloropsis gaditana]) HSP 1 Score: 906.0 bits (2340), Expect = 7.800e-260 Identity = 530/754 (70.29%), Postives = 583/754 (77.32%), Query Frame = 0
Query: 2 RGGPRQQRMWLLFLLLSLIFHATHARPHDVLRRRPPLPSL-WLYRNGGEANITSSPE-IHGEHTVAVPPPSSTAST----------SPLLPSVSHSKPSRRSKRLVFRDAVFPIYGREVRKFFSMGMIKFLIVFVLTITRDVKDTLIVTSCGAESIAFLKVYGVLPAAAAFTIAYSKMSNSLSKDALYYALVAPFFIFYLLFDLIIYPRRHQLHPAATATSFQGLSYLLGLYNNWTFALYYIVSEIYSSVSIGLLFWQFANDVITVDEAKRFYPLFGQLSSIAPIIAGQCVARVASNGDFGASLRVLTILTSLCGVGIMILYRYCSLLVDKEARDGLLDSSMVQNLQQRRPRPQLSLQESSAFLLNSQYLRYMAVLVLGFGLAINFTDILWKSMVKDYFPDKLAYQRFMGYYSSTVGATTFVVIFFGSNIVKHLGWRIGALATPVMMALLAIPFFGAIFLKGFGASTKKTALLAVGAGALMSVLSKATKYALFDPTTQMAYIPLDEESKSKGKAAIDVLGSRVGKSLGALLLQACVVVFGSAIRASYVVGGMFYVVIFSWVYSANNLATMFEALTERSPRSSSSSSSSSSTSSSDNSSGDFPSPLFPAMPRFA-----PVAAVQE--GEMPAEVPPSSSSVPPSFLAGGLNPHIAPPPVSRGGEEEDSDDEVREGLSSIGYEGNAAAASFVALDESNAAAAGAATAKEEEELLLSQPAASESVAPTHT-PPPTTFDSTEEASVSSHPPPPLPPP 736
R PRQ R+ F+L+ + A D+LRRRPP P L WLYR GG N +S P+ +H + P PS ST +P L + S+P RRSK + RDAVFPIYGREV KFFSMGMIKFLIVFVLTITRDVKDTLIVTSCGAESIAFLKVYGVLPAAAAFT+AYSKMSN+LSKDALYYALVAPFF+FYLLFDL+IYPRRHQLHP ATATSFQGLSYLLGLYNNWTFALYYIVSEIYSSVSIGLLFWQFANDVITVDEAKRFYPLFGQLSS+APIIAGQCVARVA GDFG SLR+LT LT+LCG+GIM+LY YCS LV KEA DGLL S MV+NLQQ RPRPQLSLQES++FLL SQYLRYMAVLVLGFGLAINFTDILWKSMVKDYFPDKLAYQRFMG+YSSTVGATTFVVIFFGSNIVKHLGWRIGALATPVMMA LA+PFF AIFLKGFGAS+K+TALLAVGAGALMSVLSKATKYALFDPTTQMAYIPLDEESKSKGKAAIDVLGSRVGKSLGALLLQACV+VFGSA+RASYVVGGMFY VIFSW++SANNLA +F+ LTER + + S +S ++ S G S A + PVAA QE E+PAEVPPSSS+ P +FL GGLNPHIAPPP+ G EE + E EG G EG E A A + E + + SQ A + P T P P +F S+ + S P P
Sbjct: 18 RRPPRQWRLCRGFILVLAFSVVSQAHVQDLLRRRPPHPHLSWLYRKGGATNNSSVPKSVHEPLFTSSPAPSPPVSTPEAEAFPEAPTPALLTDYPSRP-RRSKARLLRDAVFPIYGREVHKFFSMGMIKFLIVFVLTITRDVKDTLIVTSCGAESIAFLKVYGVLPAAAAFTVAYSKMSNALSKDALYYALVAPFFLFYLLFDLVIYPRRHQLHPTATATSFQGLSYLLGLYNNWTFALYYIVSEIYSSVSIGLLFWQFANDVITVDEAKRFYPLFGQLSSVAPIIAGQCVARVADGGDFGGSLRILTGLTTLCGMGIMVLYHYCSRLVQKEASDGLLTSHMVKNLQQSRPRPQLSLQESASFLLGSQYLRYMAVLVLGFGLAINFTDILWKSMVKDYFPDKLAYQRFMGFYSSTVGATTFVVIFFGSNIVKHLGWRIGALATPVMMAALAVPFFAAIFLKGFGASSKRTALLAVGAGALMSVLSKATKYALFDPTTQMAYIPLDEESKSKGKAAIDVLGSRVGKSLGALLLQACVMVFGSALRASYVVGGMFYAVIFSWIFSANNLAGLFQELTERPRKYGAGSGLASGSTDSGGGKGGAGSDSSGASTDGSGSGPTPVAAAQEVPQEVPAEVPPSSSA-PSAFLDGGLNPHIAPPPI-EGREEGSEEGEEGEG----GGEGEGRCGPLEGEGE-----AIAIPSTEFMQSVASQGAERDMSLPRSTDPSPPSFHSSGPGTAPSQDSSSFPAP 759
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO28G00870.1 ID=NO28G00870.1|Name=NO28G00870.1|organism=Nannochloropsis oceanica|type=mRNA|length=2217bp
ATGAGGGGAGGACCAAGACAGCAGCGCATGTGGCTCCTCTTCCTCCTCCT
CTCGCTTATCTTCCACGCAACACACGCCCGTCCACATGATGTATTAAGAA
GAAGACCGCCCTTGCCAAGCCTCTGGCTCTATCGTAATGGCGGCGAGGCC
AACATCACATCTTCGCCCGAGATACATGGAGAGCACACAGTTGCCGTTCC
TCCCCCTTCCTCCACCGCATCCACCTCCCCCCTCCTCCCCTCAGTATCTC
ACTCAAAACCTTCACGGCGGAGCAAACGCCTCGTCTTCCGCGACGCCGTT
TTCCCAATCTATGGCCGGGAAGTCCGCAAGTTCTTCTCCATGGGGATGAT
CAAGTTTCTCATAGTGTTTGTCCTCACCATCACCCGGGACGTGAAAGACA
CCCTAATCGTCACTAGCTGCGGAGCCGAGTCCATCGCCTTCCTCAAGGTT
TACGGCGTCCTGCCTGCCGCTGCGGCTTTCACCATCGCATATAGCAAAAT
GTCTAACTCCCTGAGCAAAGACGCCTTGTACTACGCATTAGTCGCGCCCT
TCTTCATCTTCTACCTATTGTTCGATCTGATCATCTACCCCCGCCGCCAC
CAACTCCACCCCGCCGCCACCGCCACCTCCTTCCAAGGTCTCTCGTACCT
CCTGGGCCTGTACAACAACTGGACCTTCGCCCTCTATTATATCGTGTCGG
AGATTTACTCCTCCGTCTCCATCGGCCTCCTCTTCTGGCAGTTTGCCAAC
GATGTAATCACGGTCGACGAGGCCAAGAGATTCTACCCCCTCTTCGGGCA
GCTTTCCTCCATTGCTCCCATCATCGCCGGACAATGCGTCGCCCGCGTGG
CCTCGAATGGCGACTTCGGCGCTTCCCTCCGGGTTCTGACCATTCTGACG
AGCCTGTGTGGCGTCGGCATCATGATCCTCTACCGGTACTGCTCCCTCCT
CGTCGACAAGGAAGCCCGAGACGGACTCCTCGACTCCAGCATGGTCCAAA
ACTTGCAACAGCGCCGCCCGCGCCCGCAGCTCTCCCTCCAGGAATCCTCT
GCCTTTCTCCTAAATTCTCAATACCTGCGCTACATGGCCGTGCTTGTGCT
AGGCTTTGGTCTTGCGATTAACTTTACTGATATTTTGTGGAAAAGCATGG
TCAAAGACTACTTCCCCGACAAGCTCGCTTATCAACGGTTCATGGGCTAT
TACTCCTCTACCGTCGGAGCGACCACCTTTGTGGTTATTTTCTTTGGAAG
TAACATTGTGAAGCACCTCGGGTGGAGGATAGGGGCACTGGCCACCCCCG
TGATGATGGCCCTTTTGGCAATTCCGTTTTTTGGCGCGATTTTTTTGAAG
GGCTTTGGGGCGAGCACTAAGAAGACGGCGTTGCTTGCCGTGGGGGCCGG
GGCGTTGATGTCTGTGCTGAGCAAGGCGACAAAGTACGCATTGTTTGACC
CGACCACACAAATGGCTTACATTCCTTTGGACGAGGAGTCCAAGAGTAAG
GGGAAGGCCGCGATCGATGTGCTTGGCTCTAGGGTGGGCAAGTCTTTGGG
AGCCCTGCTACTGCAGGCGTGCGTGGTGGTATTCGGCTCGGCGATACGAG
CGTCATATGTAGTAGGAGGGATGTTCTACGTGGTCATATTTTCGTGGGTT
TACTCCGCTAATAACCTGGCGACCATGTTCGAGGCATTGACGGAACGATC
GCCCCGCTCCAGCAGTAGCAGCAGTAGCAGCAGTAGCACCAGCAGCAGTG
ATAATAGTAGCGGGGACTTTCCTTCTCCTCTTTTTCCCGCCATGCCGCGC
TTTGCACCTGTAGCCGCTGTGCAGGAGGGAGAGATGCCGGCCGAGGTCCC
TCCCTCTTCTTCTTCCGTCCCGCCTTCCTTCCTGGCAGGAGGCTTGAACC
CTCACATCGCGCCACCCCCCGTTTCCAGAGGAGGGGAGGAAGAGGACAGT
GACGACGAGGTAAGAGAAGGATTAAGTTCCATAGGATACGAGGGGAATGC
CGCGGCGGCATCTTTTGTTGCATTGGACGAGTCCAATGCAGCAGCGGCTG
GAGCAGCCACGGCGAAAGAGGAGGAGGAGCTGCTACTTTCCCAACCAGCG
GCGTCAGAATCAGTAGCACCAACACATACACCACCTCCTACTACCTTTGA
CTCCACGGAGGAGGCCTCGGTATCTTCTCATCCACCACCGCCTCTTCCTC
CTCCGACTCCTTTTTAG back to topprotein sequence of NO28G00870.1 >NO28G00870.1-protein ID=NO28G00870.1-protein|Name=NO28G00870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=739bp
MRGGPRQQRMWLLFLLLSLIFHATHARPHDVLRRRPPLPSLWLYRNGGEA
NITSSPEIHGEHTVAVPPPSSTASTSPLLPSVSHSKPSRRSKRLVFRDAV
FPIYGREVRKFFSMGMIKFLIVFVLTITRDVKDTLIVTSCGAESIAFLKV
YGVLPAAAAFTIAYSKMSNSLSKDALYYALVAPFFIFYLLFDLIIYPRRH
QLHPAATATSFQGLSYLLGLYNNWTFALYYIVSEIYSSVSIGLLFWQFAN
DVITVDEAKRFYPLFGQLSSIAPIIAGQCVARVASNGDFGASLRVLTILT
SLCGVGIMILYRYCSLLVDKEARDGLLDSSMVQNLQQRRPRPQLSLQESS
AFLLNSQYLRYMAVLVLGFGLAINFTDILWKSMVKDYFPDKLAYQRFMGY
YSSTVGATTFVVIFFGSNIVKHLGWRIGALATPVMMALLAIPFFGAIFLK
GFGASTKKTALLAVGAGALMSVLSKATKYALFDPTTQMAYIPLDEESKSK
GKAAIDVLGSRVGKSLGALLLQACVVVFGSAIRASYVVGGMFYVVIFSWV
YSANNLATMFEALTERSPRSSSSSSSSSSTSSSDNSSGDFPSPLFPAMPR
FAPVAAVQEGEMPAEVPPSSSSVPPSFLAGGLNPHIAPPPVSRGGEEEDS
DDEVREGLSSIGYEGNAAAASFVALDESNAAAAGAATAKEEEELLLSQPA
ASESVAPTHTPPPTTFDSTEEASVSSHPPPPLPPPTPF* back to topmRNA from alignment at chr28:288184..290661- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO28G00870.1 ID=NO28G00870.1|Name=NO28G00870.1|organism=Nannochloropsis oceanica|type=mRNA|length=2478bp|location=Sequence derived from alignment at chr28:288184..290661- (Nannochloropsis oceanica)
ATGAGGGGAGGACCAAGACAGCAGCGCATGTGGCTCCTCTTCCTCCTCCT
CTCGCTTATCTTCCACGCAACACACGCCCGTCCACATGATGTATTAAGAA
GAAGACCGCCCTTGCCAAGCCTCTGGCTCTATCGTAATGTAAGTAGAGTA
GTTGTAGCACACCACTTGACGTTGCAGGCATATGAGGTCCATGCTGTTGG
GCCGCAAGGTCTTGTGTATACATGGCACCATCATTAATAGATGTTGAGGT
TTAATCTGTGTATTTCCAACTGCCAGCTTGATGAAATTGTGAACAAAGAG
GTGAAGCCCGCGGCTCTTGCGACGTCGCAGGCATAAATGCGGCCCCTGCT
GCTCGTTCGAATCTCACTTCATTCCCAATATTTCCGTACACGCGCACAGG
GCGGCGAGGCCAACATCACATCTTCGCCCGAGATACATGGAGAGCACACA
GTTGCCGTTCCTCCCCCTTCCTCCACCGCATCCACCTCCCCCCTCCTCCC
CTCAGTATCTCACTCAAAACCTTCACGGCGGAGCAAACGCCTCGTCTTCC
GCGACGCCGTTTTCCCAATCTATGGCCGGGAAGTCCGCAAGTTCTTCTCC
ATGGGGATGATCAAGTTTCTCATAGTGTTTGTCCTCACCATCACCCGGGA
CGTGAAAGACACCCTAATCGTCACTAGCTGCGGAGCCGAGTCCATCGCCT
TCCTCAAGGTTTACGGCGTCCTGCCTGCCGCTGCGGCTTTCACCATCGCA
TATAGCAAAATGTCTAACTCCCTGAGCAAAGACGCCTTGTACTACGCATT
AGTCGCGCCCTTCTTCATCTTCTACCTATTGTTCGATCTGATCATCTACC
CCCGCCGCCACCAACTCCACCCCGCCGCCACCGCCACCTCCTTCCAAGGT
CTCTCGTACCTCCTGGGCCTGTACAACAACTGGACCTTCGCCCTCTATTA
TATCGTGTCGGAGATTTACTCCTCCGTCTCCATCGGCCTCCTCTTCTGGC
AGTTTGCCAACGATGTAATCACGGTCGACGAGGCCAAGAGATTCTACCCC
CTCTTCGGGCAGCTTTCCTCCATTGCTCCCATCATCGCCGGACAATGCGT
CGCCCGCGTGGCCTCGAATGGCGACTTCGGCGCTTCCCTCCGGGTTCTGA
CCATTCTGACGAGCCTGTGTGGCGTCGGCATCATGATCCTCTACCGGTAC
TGCTCCCTCCTCGTCGACAAGGAAGCCCGAGACGGACTCCTCGACTCCAG
CATGGTCCAAAACTTGCAACAGCGCCGCCCGCGCCCGCAGCTCTCCCTCC
AGGAATCCTCTGCCTTTCTCCTAAATTCTCAATACCTGCGCTACATGGCC
GTGCTTGTGCTAGGCTTTGGTCTTGCGATTAACTTTACTGATATTTTGTG
GAAAAGCATGGTCAAAGACTACTTCCCCGACAAGCTCGCTTATCAACGGT
TCATGGGCTATTACTCCTCTACCGTCGGAGCGACCACCTTTGTGGTTATT
TTCTTTGGAAGTAACATTGTGAAGCACCTCGGGTGGAGGATAGGGGCACT
GGCCACCCCCGTGATGATGGCCCTTTTGGCAATTCCGTTTTTTGGCGCGA
TTTTTTTGAAGGGCTTTGGGGCGAGCACTAAGAAGACGGCGTTGCTTGCC
GTGGGGGCCGGGGCGTTGATGTCTGTGCTGAGCAAGGCGACAAAGTACGC
ATTGTTTGACCCGACCACACAAATGGCTTACATTCCTTTGGACGAGGAGT
CCAAGAGTAAGGGGAAGGCCGCGATCGATGTGCTTGGCTCTAGGGTGGGC
AAGTCTTTGGGAGCCCTGCTACTGCAGGCGTGCGTGGTGGTATTCGGCTC
GGCGATACGAGCGTCATATGTAGTAGGAGGGATGTTCTACGTGGTCATAT
TTTCGTGGGTTTACTCCGCTAATAACCTGGCGACCATGTTCGAGGCATTG
ACGGAACGATCGCCCCGCTCCAGCAGTAGCAGCAGTAGCAGCAGTAGCAC
CAGCAGCAGTGATAATAGTAGCGGGGACTTTCCTTCTCCTCTTTTTCCCG
CCATGCCGCGCTTTGCACCTGTAGCCGCTGTGCAGGAGGGAGAGATGCCG
GCCGAGGTCCCTCCCTCTTCTTCTTCCGTCCCGCCTTCCTTCCTGGCAGG
AGGCTTGAACCCTCACATCGCGCCACCCCCCGTTTCCAGAGGAGGGGAGG
AAGAGGACAGTGACGACGAGGTAAGAGAAGGATTAAGTTCCATAGGATAC
GAGGGGAATGCCGCGGCGGCATCTTTTGTTGCATTGGACGAGTCCAATGC
AGCAGCGGCTGGAGCAGCCACGGCGAAAGAGGAGGAGGAGCTGCTACTTT
CCCAACCAGCGGCGTCAGAATCAGTAGCACCAACACATACACCACCTCCT
ACTACCTTTGACTCCACGGAGGAGGCCTCGGTATCTTCTCATCCACCACC
GCCTCTTCCTCCTCCGACTCCTTTTTAG back to topCoding sequence (CDS) from alignment at chr28:288184..290661- >NO28G00870.1 ID=NO28G00870.1|Name=NO28G00870.1|organism=Nannochloropsis oceanica|type=CDS|length=2217bp|location=Sequence derived from alignment at chr28:288184..290661- (Nannochloropsis oceanica)
ATGAGGGGAGGACCAAGACAGCAGCGCATGTGGCTCCTCTTCCTCCTCCT
CTCGCTTATCTTCCACGCAACACACGCCCGTCCACATGATGTATTAAGAA
GAAGACCGCCCTTGCCAAGCCTCTGGCTCTATCGTAATGGCGGCGAGGCC
AACATCACATCTTCGCCCGAGATACATGGAGAGCACACAGTTGCCGTTCC
TCCCCCTTCCTCCACCGCATCCACCTCCCCCCTCCTCCCCTCAGTATCTC
ACTCAAAACCTTCACGGCGGAGCAAACGCCTCGTCTTCCGCGACGCCGTT
TTCCCAATCTATGGCCGGGAAGTCCGCAAGTTCTTCTCCATGGGGATGAT
CAAGTTTCTCATAGTGTTTGTCCTCACCATCACCCGGGACGTGAAAGACA
CCCTAATCGTCACTAGCTGCGGAGCCGAGTCCATCGCCTTCCTCAAGGTT
TACGGCGTCCTGCCTGCCGCTGCGGCTTTCACCATCGCATATAGCAAAAT
GTCTAACTCCCTGAGCAAAGACGCCTTGTACTACGCATTAGTCGCGCCCT
TCTTCATCTTCTACCTATTGTTCGATCTGATCATCTACCCCCGCCGCCAC
CAACTCCACCCCGCCGCCACCGCCACCTCCTTCCAAGGTCTCTCGTACCT
CCTGGGCCTGTACAACAACTGGACCTTCGCCCTCTATTATATCGTGTCGG
AGATTTACTCCTCCGTCTCCATCGGCCTCCTCTTCTGGCAGTTTGCCAAC
GATGTAATCACGGTCGACGAGGCCAAGAGATTCTACCCCCTCTTCGGGCA
GCTTTCCTCCATTGCTCCCATCATCGCCGGACAATGCGTCGCCCGCGTGG
CCTCGAATGGCGACTTCGGCGCTTCCCTCCGGGTTCTGACCATTCTGACG
AGCCTGTGTGGCGTCGGCATCATGATCCTCTACCGGTACTGCTCCCTCCT
CGTCGACAAGGAAGCCCGAGACGGACTCCTCGACTCCAGCATGGTCCAAA
ACTTGCAACAGCGCCGCCCGCGCCCGCAGCTCTCCCTCCAGGAATCCTCT
GCCTTTCTCCTAAATTCTCAATACCTGCGCTACATGGCCGTGCTTGTGCT
AGGCTTTGGTCTTGCGATTAACTTTACTGATATTTTGTGGAAAAGCATGG
TCAAAGACTACTTCCCCGACAAGCTCGCTTATCAACGGTTCATGGGCTAT
TACTCCTCTACCGTCGGAGCGACCACCTTTGTGGTTATTTTCTTTGGAAG
TAACATTGTGAAGCACCTCGGGTGGAGGATAGGGGCACTGGCCACCCCCG
TGATGATGGCCCTTTTGGCAATTCCGTTTTTTGGCGCGATTTTTTTGAAG
GGCTTTGGGGCGAGCACTAAGAAGACGGCGTTGCTTGCCGTGGGGGCCGG
GGCGTTGATGTCTGTGCTGAGCAAGGCGACAAAGTACGCATTGTTTGACC
CGACCACACAAATGGCTTACATTCCTTTGGACGAGGAGTCCAAGAGTAAG
GGGAAGGCCGCGATCGATGTGCTTGGCTCTAGGGTGGGCAAGTCTTTGGG
AGCCCTGCTACTGCAGGCGTGCGTGGTGGTATTCGGCTCGGCGATACGAG
CGTCATATGTAGTAGGAGGGATGTTCTACGTGGTCATATTTTCGTGGGTT
TACTCCGCTAATAACCTGGCGACCATGTTCGAGGCATTGACGGAACGATC
GCCCCGCTCCAGCAGTAGCAGCAGTAGCAGCAGTAGCACCAGCAGCAGTG
ATAATAGTAGCGGGGACTTTCCTTCTCCTCTTTTTCCCGCCATGCCGCGC
TTTGCACCTGTAGCCGCTGTGCAGGAGGGAGAGATGCCGGCCGAGGTCCC
TCCCTCTTCTTCTTCCGTCCCGCCTTCCTTCCTGGCAGGAGGCTTGAACC
CTCACATCGCGCCACCCCCCGTTTCCAGAGGAGGGGAGGAAGAGGACAGT
GACGACGAGGTAAGAGAAGGATTAAGTTCCATAGGATACGAGGGGAATGC
CGCGGCGGCATCTTTTGTTGCATTGGACGAGTCCAATGCAGCAGCGGCTG
GAGCAGCCACGGCGAAAGAGGAGGAGGAGCTGCTACTTTCCCAACCAGCG
GCGTCAGAATCAGTAGCACCAACACATACACCACCTCCTACTACCTTTGA
CTCCACGGAGGAGGCCTCGGTATCTTCTCATCCACCACCGCCTCTTCCTC
CTCCGACTCCTTTTTAG back to top
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