NO28G00730.1, NO28G00730.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO28G00730.1
Unique NameNO28G00730.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1308
Alignment locationchr28:247497..248990 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:247497..248990 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO28G00730.1 vs.
Match: EWM20920.1 (hypothetical protein Naga_100061g18 [Nannochloropsis gaditana])

HSP 1 Score: 303.5 bits (776), Expect = 1.000e-78
Identity = 193/464 (41.59%), Postives = 273/464 (58.84%), Query Frame = 0 
Query:    3 QVHTFGKVIEGQILPEFEKMVLTYKKEMEPILADGKRYLEDIELAEGNVQTAYREYRDQAQALEKMGVSDSELDLWVFEMQYRVAVGLLLETWKVCRSALGALFKRMKDAEMTRRRVTHAALGTVLGQQTTYWKRLPEYGLTLPSQVHPRVSEPRLIEKEIGADVRTGVQRLQHSQEGWRRK--IVANRPMPMRTPTPFTSAPGLGGTSVDWSSNSINLALSTNAVAAGAAA--------GGEVKGVRTRSSRKQLAKEF----------------THVFERKNNNVFMPWKPVLAVLTVDNYLHIFDLPSCRNKATTAATATAAAAAAQEAFESLVAKPETVSRASCAIPLASPTTNLFHKENEG--GGIGIVSPSKSFNLDICDAHFKDAKSVRDLSFDIIEAGVRAG-GGMGLQGVVKDLANKQVVTLKGRDKAEMTEWCNVFHTLKRMKCV--DAAVGAR 436
            QVH F KVIE  I+P  E+M+ T+    E IL DG  YLEDI++AE +VQ A+ +YRDQAQALEKMG+S+ + DLW++EM YR+AV +LLETW++  +AL A+F RMKD EM RR+  H+AL T+  +QT YW++LP  G+TL S V    ++PRLIEK+IGAD+R G +RL  S+EG   K  I+A RP+ + T     SA  LG TS      S N +   + + +G+ +          +      ++ RK+ AK+                   +FE+K+ NVF   + VLAV+T+D+YLHIFDLP    ++ T A A  A+ AAQ A   L+ +P+ VSRA         +  +F  + EG    + +VSP  + NL  C+A+ K A S +D   +I+E G  AG G  G + V++ LA+++VV LKG  + E+ +WC V    KRM      A VGAR
Sbjct:  224 QVHIFAKVIETNIIPVLEEMITTFNASEESILQDGGTYLEDIDVAEDHVQQAFIQYRDQAQALEKMGMSEGQ-DLWIYEMHYRMAVVILLETWELSSTALTAMFARMKDTEMARRQAIHSALQTLNEEQTAYWRKLPHLGVTLSSLVQSHATDPRLIEKQIGADIRMGAKRLGLSEEGIHLKGQIMATRPLRVFTQASIQSA-NLGKTS------SFNESTMEHRIKSGSGSFRCETEVVPNKKTAKANKNRRKKQAKKLFSQRLDGPLQSPLITRAQIFEQKSTNVFTCKRHVLAVMTIDSYLHIFDLPQVSIRSQTVA-ANTASPAAQAALYGLIKRPDHVSRAVGHTSSVISSNAVFTSDKEGTLKTLDLVSPRLTLNLAQCEAYVKGAASKKDTCLEIVEVG--AGLGSKGFKKVLEGLAHRRVVVLKGNTQEELEDWCGVIDACKRMSRAGSPAVVGAR 676
The following BLAST results are available for this feature:
BLAST of NO28G00730.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20920.11.000e-7841.59hypothetical protein Naga_100061g18 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO28G00730NO28G00730Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO28G00730.1NO28G00730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO28G00730.1.cds1NO28G00730.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00730.1.cds2NO28G00730.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO28G00730.1 ID=NO28G00730.1|Name=NO28G00730.1|organism=Nannochloropsis oceanica|type=mRNA|length=1308bp
ATGTATCAGGTGCATACATTTGGCAAGGTAATAGAGGGACAGATTTTGCC
GGAGTTCGAGAAAATGGTCTTGACTTATAAGAAAGAGATGGAGCCGATTT
TGGCGGATGGTAAGAGATATCTTGAGGACATCGAGCTGGCGGAGGGGAAT
GTTCAGACGGCGTATAGGGAGTACAGGGACCAGGCGCAGGCACTGGAGAA
GATGGGGGTGAGCGACAGTGAGCTGGATTTGTGGGTTTTTGAAATGCAGT
ACCGCGTGGCAGTGGGGCTCTTGTTGGAGACGTGGAAAGTGTGTAGATCG
GCGTTGGGGGCCCTGTTTAAACGGATGAAGGATGCGGAGATGACAAGGAG
GCGGGTCACTCACGCGGCACTGGGGACAGTGCTTGGCCAGCAGACCACAT
ATTGGAAGAGGCTCCCGGAGTATGGCCTGACGTTGCCCAGCCAGGTACAT
CCTCGGGTGTCGGAACCGCGTTTAATCGAGAAAGAAATTGGGGCTGATGT
CAGGACGGGGGTTCAGAGGCTGCAGCATTCCCAGGAGGGATGGCGACGTA
AGATTGTGGCCAATCGACCCATGCCTATGCGCACTCCTACTCCTTTTACG
AGTGCTCCGGGCCTTGGAGGGACAAGTGTTGATTGGTCGTCTAATTCGAT
TAACCTGGCTTTATCGACGAATGCTGTTGCTGCTGGTGCCGCCGCGGGGG
GTGAAGTGAAAGGAGTACGGACAAGAAGCAGCAGGAAGCAGTTGGCCAAG
GAGTTTACCCATGTGTTCGAGCGGAAGAATAACAATGTCTTCATGCCCTG
GAAACCCGTCCTGGCCGTCCTTACCGTCGACAACTACCTCCATATTTTCG
ACCTCCCCTCCTGTCGCAACAAAGCTACCACGGCTGCTACTGCTACTGCT
GCTGCCGCAGCTGCCCAAGAGGCGTTCGAAAGCCTTGTGGCCAAGCCAGA
AACAGTTAGTCGTGCGTCCTGCGCGATTCCTCTCGCGAGTCCTACCACGA
ATCTCTTCCATAAAGAGAATGAGGGGGGAGGAATTGGGATCGTCTCGCCG
AGCAAGTCATTTAATCTCGACATTTGCGATGCGCATTTTAAGGATGCAAA
AAGTGTGAGAGATTTGTCTTTCGATATAATAGAGGCGGGCGTACGGGCGG
GGGGGGGCATGGGTCTGCAGGGAGTTGTCAAGGACCTTGCCAATAAGCAG
GTGGTGACTTTAAAAGGGCGGGATAAGGCGGAAATGACTGAGTGGTGCAA
CGTTTTCCATACCTTGAAGCGAATGAAATGCGTCGATGCAGCGGTGGGCG
CTAGGTAA
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protein sequence of NO28G00730.1

>NO28G00730.1-protein ID=NO28G00730.1-protein|Name=NO28G00730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=436bp
MYQVHTFGKVIEGQILPEFEKMVLTYKKEMEPILADGKRYLEDIELAEGN
VQTAYREYRDQAQALEKMGVSDSELDLWVFEMQYRVAVGLLLETWKVCRS
ALGALFKRMKDAEMTRRRVTHAALGTVLGQQTTYWKRLPEYGLTLPSQVH
PRVSEPRLIEKEIGADVRTGVQRLQHSQEGWRRKIVANRPMPMRTPTPFT
SAPGLGGTSVDWSSNSINLALSTNAVAAGAAAGGEVKGVRTRSSRKQLAK
EFTHVFERKNNNVFMPWKPVLAVLTVDNYLHIFDLPSCRNKATTAATATA
AAAAAQEAFESLVAKPETVSRASCAIPLASPTTNLFHKENEGGGIGIVSP
SKSFNLDICDAHFKDAKSVRDLSFDIIEAGVRAGGGMGLQGVVKDLANKQ
VVTLKGRDKAEMTEWCNVFHTLKRMKCVDAAVGAR*
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mRNA from alignment at chr28:247497..248990+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO28G00730.1 ID=NO28G00730.1|Name=NO28G00730.1|organism=Nannochloropsis oceanica|type=mRNA|length=1494bp|location=Sequence derived from alignment at chr28:247497..248990+ (Nannochloropsis oceanica)
ATGTATCAGGTGCATACATTTGGCAAGGTAATAGAGGGACAGATTTTGCC
GGAGTTCGAGAAAATGGTCTTGACTTATAAGAAAGAGATGGAGCCGATTT
TGGCGGATGGTAAGAGATATCTTGAGGACATCGAGCTGGCGGAGGGGAAT
GTTCAGACGGCGTATAGGGAGTACAGGGACCAGGCGCAGGCACTGGAGAA
GATGGGGGTGAGCGACAGTGAGCTGGATTTGTGGGTTTTTGAAATGCAGT
ACCGCGTGGCAGTGGGGCTCTTGTTGGAGACGTGGAAAGTGTGTAGATCG
GCGTTGGGGGCCCTGTTTAAACGGATGAAGGATGCGGAGATGACAAGGAG
GCGGGTCACTCACGCGGCACTGGGGACAGTGCTTGGCCAGCAGACCACAT
ATTGGAAGAGGCTCCCGGAGTATGGCCTGACGTTGCCCAGCCAGGTACAT
CCTCGGGTGTCGGAACCGCGTTTAATCGAGAAAGAAATTGGGGCTGATGT
CAGGACGGGGGTTCAGAGGCTGCAGCATTCCCAGGAGGGATGGCGACGTA
AGATTGTGGCCAATCGACCCATGCCTATGCGCACTCCTACTCCTTTTACG
AGTGCTCCGGGCCTTGGAGGGACAAGTGTTGATTGGTCGTCTAATTCGAT
TAACCTGGCTTTATCGACGAATGCTGTTGCTGCTGGTGCCGCCGCGGGGG
GTGAAGTGAAAGGAGTACGGACAAGAAGCAGCAGGAAGCAGTTGGCCAAG
GAGTTTACCCATGTACTAAAGGGCCCGTTGGACAGTCCGTTGACGAAGCG
TGTCCAGATAGGCGGCACATACTCCCTCCCCCCCATCTACCTTTCATCCC
CTTCTCCCTCATATGTTTGGGCTGAGAATTTGACACTCCAAGTTCCATGA
CGCTTCTCGCCTCCCTCCTACCCTCCGTCCATCTGCTCCCTTCCCCAGGT
GTTCGAGCGGAAGAATAACAATGTCTTCATGCCCTGGAAACCCGTCCTGG
CCGTCCTTACCGTCGACAACTACCTCCATATTTTCGACCTCCCCTCCTGT
CGCAACAAAGCTACCACGGCTGCTACTGCTACTGCTGCTGCCGCAGCTGC
CCAAGAGGCGTTCGAAAGCCTTGTGGCCAAGCCAGAAACAGTTAGTCGTG
CGTCCTGCGCGATTCCTCTCGCGAGTCCTACCACGAATCTCTTCCATAAA
GAGAATGAGGGGGGAGGAATTGGGATCGTCTCGCCGAGCAAGTCATTTAA
TCTCGACATTTGCGATGCGCATTTTAAGGATGCAAAAAGTGTGAGAGATT
TGTCTTTCGATATAATAGAGGCGGGCGTACGGGCGGGGGGGGGCATGGGT
CTGCAGGGAGTTGTCAAGGACCTTGCCAATAAGCAGGTGGTGACTTTAAA
AGGGCGGGATAAGGCGGAAATGACTGAGTGGTGCAACGTTTTCCATACCT
TGAAGCGAATGAAATGCGTCGATGCAGCGGTGGGCGCTAGGTAA
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Coding sequence (CDS) from alignment at chr28:247497..248990+

>NO28G00730.1 ID=NO28G00730.1|Name=NO28G00730.1|organism=Nannochloropsis oceanica|type=CDS|length=1308bp|location=Sequence derived from alignment at chr28:247497..248990+ (Nannochloropsis oceanica)
ATGTATCAGGTGCATACATTTGGCAAGGTAATAGAGGGACAGATTTTGCC
GGAGTTCGAGAAAATGGTCTTGACTTATAAGAAAGAGATGGAGCCGATTT
TGGCGGATGGTAAGAGATATCTTGAGGACATCGAGCTGGCGGAGGGGAAT
GTTCAGACGGCGTATAGGGAGTACAGGGACCAGGCGCAGGCACTGGAGAA
GATGGGGGTGAGCGACAGTGAGCTGGATTTGTGGGTTTTTGAAATGCAGT
ACCGCGTGGCAGTGGGGCTCTTGTTGGAGACGTGGAAAGTGTGTAGATCG
GCGTTGGGGGCCCTGTTTAAACGGATGAAGGATGCGGAGATGACAAGGAG
GCGGGTCACTCACGCGGCACTGGGGACAGTGCTTGGCCAGCAGACCACAT
ATTGGAAGAGGCTCCCGGAGTATGGCCTGACGTTGCCCAGCCAGGTACAT
CCTCGGGTGTCGGAACCGCGTTTAATCGAGAAAGAAATTGGGGCTGATGT
CAGGACGGGGGTTCAGAGGCTGCAGCATTCCCAGGAGGGATGGCGACGTA
AGATTGTGGCCAATCGACCCATGCCTATGCGCACTCCTACTCCTTTTACG
AGTGCTCCGGGCCTTGGAGGGACAAGTGTTGATTGGTCGTCTAATTCGAT
TAACCTGGCTTTATCGACGAATGCTGTTGCTGCTGGTGCCGCCGCGGGGG
GTGAAGTGAAAGGAGTACGGACAAGAAGCAGCAGGAAGCAGTTGGCCAAG
GAGTTTACCCATGTGTTCGAGCGGAAGAATAACAATGTCTTCATGCCCTG
GAAACCCGTCCTGGCCGTCCTTACCGTCGACAACTACCTCCATATTTTCG
ACCTCCCCTCCTGTCGCAACAAAGCTACCACGGCTGCTACTGCTACTGCT
GCTGCCGCAGCTGCCCAAGAGGCGTTCGAAAGCCTTGTGGCCAAGCCAGA
AACAGTTAGTCGTGCGTCCTGCGCGATTCCTCTCGCGAGTCCTACCACGA
ATCTCTTCCATAAAGAGAATGAGGGGGGAGGAATTGGGATCGTCTCGCCG
AGCAAGTCATTTAATCTCGACATTTGCGATGCGCATTTTAAGGATGCAAA
AAGTGTGAGAGATTTGTCTTTCGATATAATAGAGGCGGGCGTACGGGCGG
GGGGGGGCATGGGTCTGCAGGGAGTTGTCAAGGACCTTGCCAATAAGCAG
GTGGTGACTTTAAAAGGGCGGGATAAGGCGGAAATGACTGAGTGGTGCAA
CGTTTTCCATACCTTGAAGCGAATGAAATGCGTCGATGCAGCGGTGGGCG
CTAGGTAA
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Synonyms
Publications