NO28G00470.1, NO28G00470.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO28G00470.1
Unique NameNO28G00470.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length327
Alignment locationchr28:174074..174773 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:174074..174773 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO28G00470.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO28G00470NO28G00470Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO28G00470.1NO28G00470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO28G00470.1.cds1NO28G00470.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00470.1.cds2NO28G00470.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO28G00470.1 ID=NO28G00470.1|Name=NO28G00470.1|organism=Nannochloropsis oceanica|type=mRNA|length=327bp
ATGATACCGTGGATGTTAACAAACGACCTCATCGTTGATCAGCAACAGCT
GCAGGTGGTACTGGAATGGAAGCAGCCCCAGCTCCGACAGGGAGGAGGAG
GAGGAGGAGGAAGAGGAGGACAAGGAGGAGTGGGGGGAGGCAGGCAGACA
TATTTCGATGTTTATGTTCCTGCAGTTGCTGCTGGTGGTAACATGGATCC
GCACCCACTTCTACAGGAACGAGGGGAAGGAGGAGGAGGGAAGAGTGGGG
GAGAGGGAGGAGGAGGGCTGTTTACTTGTACTCCCACCATGCAGCAGCAC
TATTGTGACACCATTGTAACCATGTAA
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protein sequence of NO28G00470.1

>NO28G00470.1-protein ID=NO28G00470.1-protein|Name=NO28G00470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=109bp
MIPWMLTNDLIVDQQQLQVVLEWKQPQLRQGGGGGGGRGGQGGVGGGRQT
YFDVYVPAVAAGGNMDPHPLLQERGEGGGGKSGGEGGGGLFTCTPTMQQH
YCDTIVTM*
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mRNA from alignment at chr28:174074..174773-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO28G00470.1 ID=NO28G00470.1|Name=NO28G00470.1|organism=Nannochloropsis oceanica|type=mRNA|length=700bp|location=Sequence derived from alignment at chr28:174074..174773- (Nannochloropsis oceanica)
ATGATACCGTGGATGTTAACAAACGACCTCATCGTTGATGTTAGTCATGT
TTATGCATGGTTACCTTACACCGTCAGGTGATTTCGCGGAGACATTTCAC
GGCCTCATTTCACGGCCTCAACCTCCCCCTTTCACCCGCGTGTTCAGGCC
GCTTTCCACGGCTTGATTACACGGCCTCTTGTCAGGCCACCGCCACAGCA
CATGAAACAACACAGAAAGCAACATGACAATACCTGAAGATGACCACGAG
CAGCTGAACGACCTTCCTCAAGTCATGCTGCCGGCAGACGCCCCACCTCC
CAATCGCTCACAGCCGGGCCAGCCAGAGGACGAGGAGCAGATGTGGCAGC
CGTAGTTCCAGCAGGAAGGGGGACTATTGGGAGTAGCATCATTTTTCTTC
TCTTCCCCCCAGCAGCAACAGCTGCAGGTGGTACTGGAATGGAAGCAGCC
CCAGCTCCGACAGGGAGGAGGAGGAGGAGGAGGAAGAGGAGGACAAGGAG
GAGTGGGGGGAGGCAGGCAGACATATTTCGATGTTTATGTTCCTGCAGTT
GCTGCTGGTGGTAACATGGATCCGCACCCACTTCTACAGGAACGAGGGGA
AGGAGGAGGAGGGAAGAGTGGGGGAGAGGGAGGAGGAGGGCTGTTTACTT
GTACTCCCACCATGCAGCAGCACTATTGTGACACCATTGTAACCATGTAA
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Coding sequence (CDS) from alignment at chr28:174074..174773-

>NO28G00470.1 ID=NO28G00470.1|Name=NO28G00470.1|organism=Nannochloropsis oceanica|type=CDS|length=327bp|location=Sequence derived from alignment at chr28:174074..174773- (Nannochloropsis oceanica)
ATGATACCGTGGATGTTAACAAACGACCTCATCGTTGATCAGCAACAGCT
GCAGGTGGTACTGGAATGGAAGCAGCCCCAGCTCCGACAGGGAGGAGGAG
GAGGAGGAGGAAGAGGAGGACAAGGAGGAGTGGGGGGAGGCAGGCAGACA
TATTTCGATGTTTATGTTCCTGCAGTTGCTGCTGGTGGTAACATGGATCC
GCACCCACTTCTACAGGAACGAGGGGAAGGAGGAGGAGGGAAGAGTGGGG
GAGAGGGAGGAGGAGGGCTGTTTACTTGTACTCCCACCATGCAGCAGCAC
TATTGTGACACCATTGTAACCATGTAA
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Synonyms
Publications