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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr28 | genome | chr28:156493..160730 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO28G00410.1 vs.
Match: CBN77813.1 (beta-ketoacyl synthase [Ectocarpus siliculosus]) HSP 1 Score: 511.1 bits (1315), Expect = 4.300e-141 Identity = 279/488 (57.17%), Postives = 349/488 (71.52%), Query Frame = 0
Query: 93 KLTLAVVGSLALTS-AFQPSSFFLR-------QTSSVSSSSSSSRTVRRASGEVSMADLPPLVRKRVVITGVGAVSPLGWG-DDFWNGLVEGRSGIVRLPSWADEYPARIGGLVPDHFKPSDYMNAKEVKRQARFTHFAMAAARMAVEDAKLDLEKVDRSRAGCMIGSGIGGVEIFEKNCGEFDKKGGGLPGLKAVSPFLIPALIANTAAGTVAIELGLKGPNYCSVSACASGTHTIGDAFFFLQNGMADVCVTGGTEAAITPLCFAGFVAIRALTTSGNDDPTKASKPFDKNRAGFVMAEGAGMLVLETEEHAKARGATIYAELAGYGASCDAHHITAPHPEGEGLANAMNMALTSAGLKPTDV--DYINAHGTSTAYNDKFETLAIHRVFGEH-AKKLKVSSIKSMTGHSLGAAGAFEAVACAKAIKEGIIPPTINYETP--DPDCDLDYVPNKAIKHDV--NVAISDNLGFGGHNAALVFKKYVA 565
K LAV +LA+ + AF P L T +V SSS+ S R + M++ +K++VITGVG++S +G G D + L++G++GI LP WA+EYP +IG LV D FKPSD+M+ K+ KRQ R+T FAMAA ++A+ED+KLD E VD+ R G +IGSGIGGVE FE NC +F G G GLK VSPFLIPALI+NTA+G VAIE +GPN+ VSACA+GTH IG A F+ G ADV + GG+EAA+TPLCFAGF ++RA+ TS NDDP KAS+PFDK+RAGFVM EGAG+L+LETEEHA ARGATIY E+AGYGA+CDAHHITAP P+G GLA A+ ++ G++ D+ YINAHGTST YNDKFET+AI RV GE AK++ +SS KSM GH+LGAAG EA+ CA+ ++ G IPPT N E P + CDL+Y P + + V VAISDNLGFGGHNAAL FK Y A
Sbjct: 6 KACLAVWAALAIQAEAFVPPVNPLSAARPAGVDTRAVYSSSAVSSGSSRRESALYMSEG---AKKKIVITGVGSLSSVGIGADSHYQALLDGKNGIETLPEWAEEYPCKIGCLVKD-FKPSDWMDGKDAKRQGRYTQFAMAATKLALEDSKLDTEAVDKDRFGVLIGSGIGGVEFFENNCNKFTAAGAGAKGLKKVSPFLIPALISNTASGVVAIEHKCRGPNFGVVSACATGTHAIGTAMDFMLRGEADVMIAGGSEAAMTPLCFAGFCSMRAMVTSFNDDPEKASRPFDKDRAGFVMGEGAGVLILETEEHALARGATIYCEVAGYGATCDAHHITAPAPDGNGLARAIGASMKMGGIEAEDMVGGYINAHGTSTPYNDKFETMAIKRVLGEDVAKQVYISSTKSMMGHTLGAAGGLEAIVCAQVLRHGEIPPTKNLENPALEDGCDLNYCPGEKVVPAVKPKVAISDNLGFGGHNAALAFKAYEA 489
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO28G00410.1 ID=NO28G00410.1|Name=NO28G00410.1|organism=Nannochloropsis oceanica|type=mRNA|length=1907bp CGCACCCCCAAACCCCAAGCAGCGATTGCTGCCTGGCTGCGTCTTCGTTC TTTTTTTCTGATACGAAGCCACTTTGTCTGCCGACGGCCTGGTGTATTCT GATTCTGTACTGTGTGTGTGATGCACGGACGCACTACAAACGTGTGCGGG TCTCGACCATGTCTAGTCCCGTCACGGCCTTTGGCCTTCGGATACCGCAA CAGAAAGCGAAGGAAGCATGCAGCAACCGACCCAACAGACAGCCAAGCAG GGCAAACCATACCTCGTCGTTGGCGACGACAACTCTACGCCCAGGAAGAG GAGGTGTGGACGCAGGCACGCGGGTGTCTGTGCACTTTCCTCATGTTGTT CTCACCCTCACCAATCTCTCTCGATTTGTCCTCACGCTTCCCCTCGCCCC TTTTTCACGCAGATCATCGGTCACCATGATGGAGAAGCTGACCCTCGCAG TGGTGGGCTCCCTTGCCCTGACTTCGGCCTTCCAGCCCTCGTCCTTCTTC CTCCGGCAGACTTCCTCCGTCAGCAGCAGCAGCAGCAGCAGCAGGACTGT GCGTCGTGCATCAGGGGAAGTGAGCATGGCGGACTTGCCCCCGCTTGTCC GCAAGAGGGTGGTGATCACGGGTGTCGGCGCCGTGTCTCCTCTCGGGTGG GGAGACGACTTCTGGAACGGTCTCGTGGAAGGAAGGAGCGGCATTGTCCG CCTCCCTTCGTGGGCGGACGAGTACCCCGCGCGAATCGGAGGCTTGGTCC CGGATCACTTTAAGCCGAGCGACTACATGAATGCCAAGGAGGTGAAACGA CAGGCCCGCTTCACCCATTTTGCCATGGCAGCTGCCCGTATGGCCGTGGA AGACGCCAAACTCGACCTGGAGAAGGTGGACCGCTCGCGTGCCGGGTGCA TGATAGGATCCGGCATTGGTGGTGTAGAAATCTTCGAGAAAAACTGTGGG GAATTCGACAAGAAGGGCGGAGGGCTCCCTGGCCTCAAGGCTGTCTCCCC CTTCCTGATTCCGGCCCTCATCGCCAACACCGCAGCCGGGACAGTGGCTA TTGAACTCGGCTTGAAGGGCCCGAACTACTGCTCTGTCTCCGCCTGCGCC TCGGGCACGCATACCATCGGTGATGCCTTCTTCTTCCTCCAAAACGGCAT GGCGGACGTGTGTGTAACGGGTGGGACGGAAGCCGCCATCACCCCCCTCT GTTTCGCGGGATTTGTCGCCATTCGCGCCCTTACCACCAGTGGCAACGAC GACCCCACCAAGGCCTCCAAGCCATTCGACAAGAACCGAGCCGGGTTCGT TATGGCCGAGGGAGCGGGGATGCTCGTCCTTGAGACGGAGGAACACGCGA AGGCCCGAGGTGCCACCATCTATGCCGAGCTTGCTGGCTACGGCGCATCC TGCGACGCCCACCACATCACCGCCCCCCATCCCGAAGGCGAGGGGCTGGC GAACGCGATGAATATGGCTCTGACGTCCGCCGGCCTCAAGCCTACGGACG TGGACTACATTAATGCCCATGGAACCAGCACGGCCTACAACGACAAATTC GAGACGCTGGCCATTCACCGCGTCTTTGGCGAGCACGCCAAGAAGCTTAA GGTTTCTTCCATCAAGTCAATGACTGGTCACTCCCTCGGGGCCGCCGGTG CCTTCGAGGCCGTGGCGTGCGCGAAGGCAATCAAGGAGGGCATCATCCCG CCCACCATCAACTACGAGACTCCCGATCCGGACTGCGACTTGGACTATGT TCCCAACAAGGCGATCAAGCACGACGTGAATGTGGCCATCTCCGATAACC TGGGCTTCGGCGGGCACAACGCGGCTTTGGTCTTCAAGAAGTATGTTGCC TAGAGTGCTACCTTTCCTTTATCGGGAACGGGAGGGAGGGAGGGAGGGAG AGGGGGA back to topprotein sequence of NO28G00410.1 >NO28G00410.1-protein ID=NO28G00410.1-protein|Name=NO28G00410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=565bp MSSPVTAFGLRIPQQKAKEACSNRPNRQPSRANHTSSLATTTLRPGRGGV DAGTRVSVHFPHVVLTLTNLSRFVLTLPLAPFSRRSSVTMMEKLTLAVVG SLALTSAFQPSSFFLRQTSSVSSSSSSSRTVRRASGEVSMADLPPLVRKR VVITGVGAVSPLGWGDDFWNGLVEGRSGIVRLPSWADEYPARIGGLVPDH FKPSDYMNAKEVKRQARFTHFAMAAARMAVEDAKLDLEKVDRSRAGCMIG SGIGGVEIFEKNCGEFDKKGGGLPGLKAVSPFLIPALIANTAAGTVAIEL GLKGPNYCSVSACASGTHTIGDAFFFLQNGMADVCVTGGTEAAITPLCFA GFVAIRALTTSGNDDPTKASKPFDKNRAGFVMAEGAGMLVLETEEHAKAR GATIYAELAGYGASCDAHHITAPHPEGEGLANAMNMALTSAGLKPTDVDY INAHGTSTAYNDKFETLAIHRVFGEHAKKLKVSSIKSMTGHSLGAAGAFE AVACAKAIKEGIIPPTINYETPDPDCDLDYVPNKAIKHDVNVAISDNLGF GGHNAALVFKKYVA* back to topmRNA from alignment at chr28:156493..160730- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO28G00410.1 ID=NO28G00410.1|Name=NO28G00410.1|organism=Nannochloropsis oceanica|type=mRNA|length=4238bp|location=Sequence derived from alignment at chr28:156493..160730- (Nannochloropsis oceanica) CGCACCCCCAAACCCCAAGCAGCGATTGCTGCCTGGCTGCGTCTTCGTTC
TTTTTTTCTGATACGAAGCCACTTTGTCTGCCGACGGCCTGGTGTATTCT
GATTCTGTACTGTGTGTGTGATGCACGGACGCACTACAAACGTGTGCGGG
TCTCGACCATGTCTAGTCCCGTCACGGCCTTTGGCCTTCGGATACCGCAA
CAGAAAGCGAAGGAAGCATGCAGCAACCGACCCAACAGACAGCCAAGCAG
GGCAAACCATACCTCGTCGTTGGCGACGACAACTCTACGCCCAGGAAGAG
GAGGTGTGGACGCAGGCACGCGGGTGTCTGTGCACTTTCCTCATGTTGTT
CTCACCCTCACCAATCTCTCTCGATTTGTCCTCACGCTTCCCCTCGCCCC
TTTTTCACGCAGATCATCGGTCACCATGATGGAGAAGCTGACCCTCGCAG
TGGTAGGTGTTTGTGTGTTGCGTATGTCTTCCTCGTTTTACCTTAATTTC
CTTGTCCTCCTGCGTAGCACGATACGCGTATTGACAGAGAGGGCATTGCC
GTCTCCCTCCCTACCATGACCTGAGCTTCCCTCTCTCCCTCCCTCCTCTC
CCTTCCCTCCTTATTTTTTAGGTGGGCTCCCTTGCCCTGACTTCGGCCTT
CCAGCCCTCGTCCTTCTTCCTCCGGCAGACTTCCTCCGTCAGCAGCAGCA
GCAGCAGCAGCAGGACTGTGCGTCGTGCATCAGGGGAAGTGAGCATGGCG
GACTTGCCCCCGCTTGTCCGCAAGAGGGTGAGTGAACGGGATGGCGAACA
GGGGGTACATAATGACAAAAGAATGGACGTATCGTGACAGGACAGGAAGA
GGGCAAGGCGTGTATAATCCCCTGTGAGGAAGACTCTCACTAAACCCTTG
CTTTCCCTCCCTCCCTCCCTCCCTCCTTCCCTCCCACTAGGTGGTGATCA
CGGGTGTCGGCGCCGTGTCTCCTCTCGGGTGGGGAGACGACTTCTGGAAC
GGTCTCGTGGAAGGAAGGAGCGGCATTGTCCGCCTCCCTTCGTGGGCGGA
CGAGTACCCCGCGCGAATCGGAGGCTTGGTCCCGGATCACTTTAAGCCGA
GCGACTACATGAATGCCAAGGAGGTGAAACGACAGGTGCGTGCCCTCCCT
CCCTCCCTCCTTCGATCGCTTCATTTATCTACCCTCGCTCTCCCCCCGGC
TCCCGTCCGTGTTCATCACTGTTGCTGTCCCGAGACCCGTCTACACAACA
CCCTCCATCTTCCCCTCTGTTCCTCCGTCCCTGCCTCCCTCCCTCGACCC
ATCCTCCCCCCATTCCCACCTCCCCTCCCTCCCTCCCTCCCTCCCTCAGG
CCCGCTTCACCCATTTTGCCATGGCAGCTGCCCGTATGGCCGTGGAAGAC
GCCAAACTCGACCTGGAGAAGGTGGACCGCTCGCGTGCCGGGTGCATGAT
AGGGTACGTCCCGCCCGCCCGCCCGCCCTCCCGCCCTCCCTCCCTCCCTC
GCTCTCTTTCTCCCTCTCTTTCTCTCTTTCTCTCTTTCTCTCTTTCTCTC
TTTTTCTCTTTCTCCCTCCCTCCCTCTCTCCCTCCCTCTTTAACGCCTCC
TTTTCTTCCCTCTTCCCCTCTCCACTTTCTATGATACCCGGTACTCTGGC
GCTACACCTCTGTCCCCATCGATCCATCCCTCCCTCTCTCACTCCTTCCC
TCCCTCCGTCGCTCAGATCCGGCATTGGTGGTGTAGAAATCTTCGAGAAA
AACTGTGGGGAATTCGACAAGAAGGGCGGAGGGCTCCCTGGCCTCAAGGT
AGGGAGGGAGGGAGGGAGGGCGGGCGGGCGGGTGGGCGGGCGGGCGGGAA
ACAGGATAGGATGATCATCGAGAGCTATCATTCAAATGCGCTCTTATTCT
TCTTATCGAAACGATCCATTCCCCCCTCCCTCCCTCCATTCCCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTAGGCTGTCTCCCCCTTCCTGAT
TCCGGCCCTCATCGCCAACACCGCAGCCGGGACAGTGGCTATTGAACTCG
GTACCTCCCTCCCCCCTCCCTCCCTTCCTTCCTCCTTCATTCCCTCCCTC
CCTTCCTTCCTTCCTTTCTCCTCTCCTCCTTCATTCCCTCCCTCTCCCCC
TCCTTTTTCTCACACCTCCCTCCCTCCCTCCCTTCCTCCCTCCCTAGGCT
TGAAGGGCCCGAACTACTGCTCTGTCTCCGCCTGCGCCTCGGGCACGCAT
ACCATCGGTGATGCCTTCTTCTTCCTCCAAAACGGCATGGCGGACGTGTG
TGTAACGGGTGGGACGGAAGCCGCCATCACCCCCCTCTGTTTCGCGGGAT
TTGTCGCCATTCGCGCCCTTACCACCAGTGGCAACGACGACCCCACCAAG
GTATCTATCTCCCTCCCTCCCTCACTCCCTCCCTCCTTCCTTCCCTCCCT
CCTTCTCGCCCTTGCTCCCTCCCTCATTTTATTTCATCTCTCATCTCCTC
CTCCAAACCCCTATGCCTGACCACCCCCTCCCCCCTCCCTCTCTTCCTCC
CTCCGCAGGCCTCCAAGCCATTCGACAAGAACCGAGCCGGGTTCGTTATG
GCCGAGGGAGCGGGGATGCTCGTCCTTGAGACGGAGGAACACGCGAAGGC
CCGAGGTGCCACCATCTATGCCGAGCTTGCTGGGTAAACCATCCCACCCT
CCCTCCCTCCCTTCCTCCCTTCCTCCCGTCCATCCATCCATTCACCCCTC
GACAGATCCTGACCGTCTCTTCCCCCCTTTCCCCCCCTCCCTCCCCCCCT
CCCTCCCAAGCTACGGCGCATCCTGCGACGCCCACCACATCACCGCCCCC
CATCCCGAAGGCGAGGGGCTGGCGAACGCGATGAATATGGCTCTGACGTC
CGCCGGCCTCAAGCCTACGGACGTGGACTACATTAATGCCCATGGAACCA
GCACGGCCTACAACGACAAATTCGAGACGCTGGCCATTCACGTACGTGCC
TCCTTGCCCTCCCTCCCTCCCTCCGTCCCGCCCCCTCTCCCGCCCTTGCG
CGCAAGGACAGCCGATGGACTCGGGGCTGCTCAGGCGCTATTGCCGTCTT
CCCTCCCTCCTTCCCTCTTTCCTTCCTTTCCTCCTTTGCGCACGCTCATA
CCATCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
ATCAGCGCGTCTTTGGCGAGCACGCCAAGAAGCTTAAGGTTTCTTCCATC
AAGTCAATGACTGGTCACTCCCTCGGGGCCGCCGGTAGGCTCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTTCTTTCCTCCATTCCTGCCCTCGGTCCGA
GCTTTGAGCAGTCATCTCTCTTCGTCTGCCTCCTGCCCTCCCTCCCTCCC
TCCCTCCCTGTCTCCCTTCTTCTCTCCCTCGCCTTTTCATCCAATAACCT
CTTCTTCTTCATCCTCCCAACCCCTCCCTCCCTCCCTCCCTCCCCCCCTC
CCTCCCCAGGTGCCTTCGAGGCCGTGGCGTGCGCGAAGGCAATCAAGGAG
GGCATCATCCCGCCCACCATCAACTACGAGACTCCCGATCCGGTTAGTTT
GGACCCGGCCCTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCTTCCCCTTGTTTTTGACCCCCATCGTGTCCGACTCCCTGTCCTTGT
CGTTCGGCCACCCCTCTCTCTTTCACTCCCTCTCTCCCTTCTTCCCTTTC
TGACGCCCACATCTCCTTCATCCTTTTTACCGCTTTCCTCCAAAACTCAC
CTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCAGGACTGCG
ACTTGGACTATGTTCCCAACAAGGCGATCAAGCACGACGTGAATGTGGCC
ATCTCCGATAACCTGGGGTAGGGAGGGAGGAAGGGAGGGAGGGAGGGAGG
GAGGGAGGAAGGGAGAGAGGAAGGGAGGTGGGTGAGGGGGTGTGTAAGTG
AGAGAGGGAGAGAAAACTGCTATCCGCCGGGGGTCCGTCAAAATGTCGAA
CAAATTACGACTCACATTTCCCTCCTCCTTTTTCTACCTTCCATCCTTCT
ACATTACTCTTTCCTTCCTCCCTCCCTTCCTTCAGCTTCGGCGGGCACAA
CGCGGCTTTGGTCTTCAAGAAGTATGTTGCCTAGAGTGCTACCTTTCCTT
TATCGGGAACGGGAGGGAGGGAGGGAGGGAGAGGGGGA back to topCoding sequence (CDS) from alignment at chr28:156493..160730- >NO28G00410.1 ID=NO28G00410.1|Name=NO28G00410.1|organism=Nannochloropsis oceanica|type=CDS|length=1695bp|location=Sequence derived from alignment at chr28:156493..160730- (Nannochloropsis oceanica) ATGTCTAGTCCCGTCACGGCCTTTGGCCTTCGGATACCGCAACAGAAAGC GAAGGAAGCATGCAGCAACCGACCCAACAGACAGCCAAGCAGGGCAAACC ATACCTCGTCGTTGGCGACGACAACTCTACGCCCAGGAAGAGGAGGTGTG GACGCAGGCACGCGGGTGTCTGTGCACTTTCCTCATGTTGTTCTCACCCT CACCAATCTCTCTCGATTTGTCCTCACGCTTCCCCTCGCCCCTTTTTCAC GCAGATCATCGGTCACCATGATGGAGAAGCTGACCCTCGCAGTGGTGGGC TCCCTTGCCCTGACTTCGGCCTTCCAGCCCTCGTCCTTCTTCCTCCGGCA GACTTCCTCCGTCAGCAGCAGCAGCAGCAGCAGCAGGACTGTGCGTCGTG CATCAGGGGAAGTGAGCATGGCGGACTTGCCCCCGCTTGTCCGCAAGAGG GTGGTGATCACGGGTGTCGGCGCCGTGTCTCCTCTCGGGTGGGGAGACGA CTTCTGGAACGGTCTCGTGGAAGGAAGGAGCGGCATTGTCCGCCTCCCTT CGTGGGCGGACGAGTACCCCGCGCGAATCGGAGGCTTGGTCCCGGATCAC TTTAAGCCGAGCGACTACATGAATGCCAAGGAGGTGAAACGACAGGCCCG CTTCACCCATTTTGCCATGGCAGCTGCCCGTATGGCCGTGGAAGACGCCA AACTCGACCTGGAGAAGGTGGACCGCTCGCGTGCCGGGTGCATGATAGGA TCCGGCATTGGTGGTGTAGAAATCTTCGAGAAAAACTGTGGGGAATTCGA CAAGAAGGGCGGAGGGCTCCCTGGCCTCAAGGCTGTCTCCCCCTTCCTGA TTCCGGCCCTCATCGCCAACACCGCAGCCGGGACAGTGGCTATTGAACTC GGCTTGAAGGGCCCGAACTACTGCTCTGTCTCCGCCTGCGCCTCGGGCAC GCATACCATCGGTGATGCCTTCTTCTTCCTCCAAAACGGCATGGCGGACG TGTGTGTAACGGGTGGGACGGAAGCCGCCATCACCCCCCTCTGTTTCGCG GGATTTGTCGCCATTCGCGCCCTTACCACCAGTGGCAACGACGACCCCAC CAAGGCCTCCAAGCCATTCGACAAGAACCGAGCCGGGTTCGTTATGGCCG AGGGAGCGGGGATGCTCGTCCTTGAGACGGAGGAACACGCGAAGGCCCGA GGTGCCACCATCTATGCCGAGCTTGCTGGCTACGGCGCATCCTGCGACGC CCACCACATCACCGCCCCCCATCCCGAAGGCGAGGGGCTGGCGAACGCGA TGAATATGGCTCTGACGTCCGCCGGCCTCAAGCCTACGGACGTGGACTAC ATTAATGCCCATGGAACCAGCACGGCCTACAACGACAAATTCGAGACGCT GGCCATTCACCGCGTCTTTGGCGAGCACGCCAAGAAGCTTAAGGTTTCTT CCATCAAGTCAATGACTGGTCACTCCCTCGGGGCCGCCGGTGCCTTCGAG GCCGTGGCGTGCGCGAAGGCAATCAAGGAGGGCATCATCCCGCCCACCAT CAACTACGAGACTCCCGATCCGGACTGCGACTTGGACTATGTTCCCAACA AGGCGATCAAGCACGACGTGAATGTGGCCATCTCCGATAACCTGGGCTTC GGCGGGCACAACGCGGCTTTGGTCTTCAAGAAGTATGTTGCCTAG back to top
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