NO28G00320.1, NO28G00320.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO28G00320.1
Unique Name	NO28G00320.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2664
Alignment location	chr28:121042..128996 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr28	genome	chr28:121042..128996 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO28G00320.1 vs.
Match: EWM27236.1 (cellulose synthase (udp-forming) family gt2 [Nannochloropsis gaditana])

HSP 1 Score: 508.1 bits (1307), Expect = 5.700e-140
Identity = 266/718 (37.05%), Postives = 407/718 (56.69%), Query Frame = 0

Query:  205 VSVINIICGILYIYWRCTRSMTG-----------------------------VMHSWFAWVFLFGEIVITLSAWQSHCSRFFPVKRTRCTVDDLVKVDKTLSVRTPVTIFLPTAGESLHVLRQALLSQLSMRLWLSDLEPRHQLRVIVLDEKRRLELICLVALCYKFAAMFANNPQIKLMMKRDRVPEITSRGFYRFYEQCAAQFGRRWHGVYTEAFAVAAMIEKLCVENKIPEAWDGLELPQGERVEP-SLRVEGDKIARLREDFAEVPNIPSIIYYCRRNPGEPHISPKAGNMNSVLFPEDPVDEDILNGARFVVINDARHAFEPEYLQRVLPYFFE--LKKIDGKFKYVTAPRIAFCQVPQRF--VDRGDGDPFGNRSAVMFDVTNIGRDGMGGVMSCGQGSIWRVDVLRDGVTSDGKRGVDAMEVRSLVGTKLGYSQLSRIEDTMTSIGMFSRGFKSVYINEEDELLGRCTQEPDSMDWRIKQLFRWHYGAVELFGMGIFKLQEGRFPSIWHRIYVWEACTY-FFQAISAQIFLMMPIWYCFTWSPPFTTYKVEFIGYLIPYFLTAILPTMIGLGWRKVNPDLALREEQVWMATSYVQLYAFISSVFQRIKRAT-TALGRDSAAASNWNIDCPTWPLYTMFALQAAGVVVTSVRWFRLSFEQPWVWMSSMGGALMALWMLWPVVVKGLRLPALSKFYMRYLALGAFIVIVAAWQ 887
            ++++NI  G++Y+ WR  RSM                                 ++WF W+    EI   +S W  H SR FP KRT+CT+D+LV +D  LS RT V + +PT GESL++LR+ +L+ +S+ LW   L+ R   R++V+D++RR E++ L+ALCY+FAA+F NN +++  +K +    ++   FY  Y  C A FG+ +   + + F++A MI K+C ++ IP  WDGLELP G R+EP   + +  K+ RLREDFA+V +I +++Y+ R +   P   P AG +NS+LFPEDP D +IL  AR++V+ND RHA + E+LQR +PYFF        G  +Y     +AF QV  R    D+ D DP  NR  ++ D+ NIGRDG+GG M+   G ++R+DVL+ G    G+  V   +   L+G  LG+S L+R E   TS+ +F RGF+SVY+NE DE L  C  E   +  R++++F  H  A E+       L + R+ +  HR++V E     FF A+  ++ L+  + Y + W  PF T+ +E + + +PY+ TA LPT   L W++  PD A R  Q+  AT++V    +I S    + R   +  GR   +       CPTWPLY    L  A +VVT + W R +F    +W++S+     A+ M+ P  ++G++   +  FY+RY AL   +V+VA WQ
Sbjct:  173 IAILNIGFGLVYLCWRVFRSMNPKHDWHDWAPVGAYFIDPEDPERAWSLKEEFKYNWFCWLLFVAEIFFMVSVWLGHASRCFPSKRTKCTMDELVDIDYELSERTAVCVVIPTRGESLNILREVILNAMSLNLWPGLLDVRKNARLVVVDDRRRAEVLLLIALCYRFAALFCNNRKVRTQLKLEGRAGMSLAAFYDHYLACTAGFGQTYADSFIDIFSIADMIHKMCKDDCIPPEWDGLELPSGTRIEPKQTQTDLSKVPRLREDFADVRSILTLVYFSRPSNEFPASCPVAGMLNSLLFPEDPADANILGMARYMVVNDPRHALQTEFLQRTMPYFFRPVADTEMGTVEYEECQDVAFVQVALRVKKADKFDTDPLSNRDLILQDIINIGRDGVGGAMAKSNGCMYRIDVLKSGKNVRGRSVVSEEDPTQLLGKGLGFSTLTRCEWLPTSVELFHRGFRSVYVNEIDETLSLCFHETPRLTGRVEEVFDIHLSATEVLVRDPLGLLKARYTTRMHRLFVMEDLWQGFFMAMGIELLLLCAVLYSYLWRTPFYTHGIEVLFFFLPYYFTAALPTAAALNWKRTPPDPAFRSVQLSFATAFVPFVVYIGSGLAEMSRVVCSRSGRRQFSVEG----CPTWPLYMTLVLLLASMVVTFINWARGNFRHAGLWVTSVVMLACAISMILPTAMRGVKFHGIPSFYLRYAALAVVLVVVAFWQ 886

The following BLAST results are available for this feature:

BLAST of NO28G00320.1 vs.

BLAST of NO28G00320.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM27236.1	5.700e-140	37.05	cellulose synthase (udp-forming) family gt2 [Nanno...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO28G00320	NO28G00320	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO28G00320.1	NO28G00320.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO28G00320.1.cds1	NO28G00320.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO28G00320.1.cds2	NO28G00320.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO28G00320.1.cds3	NO28G00320.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO28G00320.1.cds4	NO28G00320.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO28G00320.1.cds5	NO28G00320.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO28G00320.1.cds6	NO28G00320.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO28G00320.1.cds7	NO28G00320.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO28G00320.1.cds8	NO28G00320.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO28G00320.1.cds9	NO28G00320.1.cds9	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO28G00320.1.cds10	NO28G00320.1.cds10	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO28G00320.1.cds11	NO28G00320.1.cds11	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO28G00320.1.cds12	NO28G00320.1.cds12	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO28G00320.1.cds13	NO28G00320.1.cds13	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO28G00320.1.cds14	NO28G00320.1.cds14	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO28G00320.1.cds15	NO28G00320.1.cds15	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO28G00320.1.cds16	NO28G00320.1.cds16	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO28G00320.1.cds17	NO28G00320.1.cds17	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO28G00320.1.cds18	NO28G00320.1.cds18	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO28G00320.1.cds19	NO28G00320.1.cds19	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO28G00320.1.cds20	NO28G00320.1.cds20	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO28G00320.1.cds21	NO28G00320.1.cds21	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO28G00320.1.cds22	NO28G00320.1.cds22	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO28G00320.1.cds23	NO28G00320.1.cds23	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO28G00320.1.cds24	NO28G00320.1.cds24	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO28G00320.1.cds25	NO28G00320.1.cds25	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO28G00320.1.cds26	NO28G00320.1.cds26	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO28G00320.1.cds27	NO28G00320.1.cds27	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO28G00320.1.cds28	NO28G00320.1.cds28	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr28:121042..128996+
coding sequence from alignment at chr28:121042..128996+

mRNA sequence

>NO28G00320.1 ID=NO28G00320.1|Name=NO28G00320.1|organism=Nannochloropsis oceanica|type=mRNA|length=2664bp
ATGGCGATGAACTTTTTGCGGAAAGCCTACGTCCCGACCAGCAACACTGA
CCGCGATGGGGACGAGGATGACGACGCCCTGCAGATGAATGAGTCGGACA
TATTTAAGGCAATGAACCAGCTGCAGCACGATGACTCGATGCCGCAGGAG
ACACGGGATCTAATAAATCAGATCTCCCAAAAGTTTGATCACAATAGCAG
CATGCACGACATAGACGATGTGTCTTCTCCCTTGGACAGTGAGATAGAGT
CAATCCCCTCACCCACGGCTTCGGACATGAGCGAGCTCGGCCAGGGGGCC
ACGAACCCCAAGACGGTGGATGCCATCAAGCAAATCACCCACCTCCTTCA
CGGAGTGGCCAGTCGTCAGACCCACACCAACCACGGCCCTGCGGACATGC
CTGACCGAGATTTCCTCCACGCTAAGGGCGTAGCGGCGTTTGCAGGATAC
CCGGCAAAATCCGTTTATCAGGAGGGAAACGGTTTTGATGCCGTTCCCGA
TATCTCGGCGGAGCTCGATCACTCCACTGGCCCAAGCACGCCGGTCAACT
ACAAGGAGGCCAAGAACCCCCAAGACTTCAAGTATCATCCTTCGCGCAAT
TTCCTCATCGGCGTCTCCGTCATCAACATCATCTGTGGCATCCTGTACAT
CTACTGGCGCTGCACCCGCTCCATGACCGGCGTGATGCACTCGTGGTTTG
CGTGGGTCTTTTTGTTCGGAGAGATCGTCATCACCCTCTCGGCGTGGCAG
TCCCACTGCTCCCGCTTCTTTCCCGTCAAGCGCACGCGCTGCACAGTCGA
CGACCTGGTGAAGGTGGACAAGACCCTCTCCGTTCGAACGCCGGTGACGA
TTTTCCTGCCCACGGCCGGCGAGTCCCTTCATGTCCTGCGTCAAGCACTC
CTGTCACAGCTCTCTATGCGGCTGTGGCTGTCGGATCTGGAGCCTCGTCA
TCAACTGCGAGTCATCGTTCTCGACGAGAAACGTCGTCTGGAGTTGATTT
GTCTCGTGGCTCTTTGCTACAAATTCGCTGCCATGTTTGCAAACAACCCC
CAGATTAAGCTGATGATGAAACGGGACCGCGTGCCGGAAATTACTTCGCG
CGGTTTTTACCGCTTTTATGAGCAGTGCGCGGCGCAGTTCGGGCGTCGGT
GGCACGGGGTCTACACCGAGGCCTTCGCTGTGGCGGCCATGATTGAAAAA
CTGTGTGTGGAGAACAAGATCCCCGAGGCCTGGGACGGGCTGGAGCTTCC
TCAAGGCGAGCGAGTAGAACCTTCTCTGCGCGTGGAAGGCGACAAGATCG
CGCGTCTCCGTGAAGATTTCGCCGAGGTGCCCAACATCCCGTCCATTATT
TACTACTGTCGCCGTAATCCAGGGGAGCCTCACATCTCTCCCAAGGCCGG
GAATATGAACTCCGTCCTCTTTCCCGAAGACCCCGTGGACGAGGACATTC
TGAATGGAGCGCGTTTTGTGGTGATCAACGACGCCCGACACGCCTTCGAA
CCCGAGTACCTCCAGCGTGTCCTCCCCTACTTCTTCGAGCTGAAAAAGAT
CGATGGAAAATTTAAATATGTAACGGCTCCCCGCATCGCCTTCTGCCAAG
TGCCCCAACGATTTGTGGACCGCGGTGATGGTGATCCCTTCGGCAATCGC
TCAGCCGTCATGTTTGACGTCACCAACATTGGGCGTGATGGCATGGGAGG
GGTGATGAGCTGCGGGCAGGGTTCCATTTGGCGCGTGGACGTACTCCGGG
ACGGTGTGACTAGTGACGGGAAACGAGGCGTGGATGCCATGGAGGTGCGT
TCCCTCGTCGGCACCAAGCTCGGATACTCCCAGCTATCCCGTATCGAGGA
CACTATGACCTCCATCGGCATGTTTTCCCGAGGATTTAAGTCCGTGTATA
TTAACGAGGAGGACGAGCTCCTGGGTCGGTGCACGCAAGAACCGGATTCG
ATGGACTGGCGTATCAAGCAGCTCTTCCGTTGGCATTACGGTGCCGTTGA
ATTATTTGGCATGGGCATTTTTAAGCTTCAAGAAGGACGATTCCCCTCCA
TCTGGCACCGCATCTACGTGTGGGAGGCCTGTACCTACTTCTTTCAAGCC
ATTTCCGCACAGATTTTCCTAATGATGCCCATTTGGTACTGCTTCACATG
GTCTCCGCCCTTCACCACCTATAAGGTGGAGTTCATCGGATATCTCATTC
CTTACTTCTTGACGGCCATCCTTCCCACCATGATCGGGCTGGGCTGGCGC
AAGGTTAATCCCGACCTGGCCTTGCGAGAGGAACAAGTCTGGATGGCCAC
CTCCTACGTCCAGCTCTACGCCTTCATCTCGTCCGTTTTTCAACGGATTA
AACGGGCCACAACGGCTCTGGGACGCGACTCGGCCGCTGCCTCCAACTGG
AATATCGACTGTCCCACGTGGCCGCTCTACACAATGTTTGCCCTTCAAGC
TGCAGGGGTGGTGGTGACCTCAGTGCGTTGGTTTCGCCTCAGTTTCGAGC
AGCCGTGGGTATGGATGTCATCAATGGGAGGTGCATTAATGGCTTTATGG
ATGCTCTGGCCCGTCGTCGTCAAGGGATTGAGACTTCCAGCGTTGTCCAA
ATTTTATATGCGGTATTTGGCATTAGGTGCCTTTATCGTCATTGTGGCCG
CTTGGCAAGACTAG

protein sequence of NO28G00320.1

>NO28G00320.1-protein ID=NO28G00320.1-protein|Name=NO28G00320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=888bp
MAMNFLRKAYVPTSNTDRDGDEDDDALQMNESDIFKAMNQLQHDDSMPQE
TRDLINQISQKFDHNSSMHDIDDVSSPLDSEIESIPSPTASDMSELGQGA
TNPKTVDAIKQITHLLHGVASRQTHTNHGPADMPDRDFLHAKGVAAFAGY
PAKSVYQEGNGFDAVPDISAELDHSTGPSTPVNYKEAKNPQDFKYHPSRN
FLIGVSVINIICGILYIYWRCTRSMTGVMHSWFAWVFLFGEIVITLSAWQ
SHCSRFFPVKRTRCTVDDLVKVDKTLSVRTPVTIFLPTAGESLHVLRQAL
LSQLSMRLWLSDLEPRHQLRVIVLDEKRRLELICLVALCYKFAAMFANNP
QIKLMMKRDRVPEITSRGFYRFYEQCAAQFGRRWHGVYTEAFAVAAMIEK
LCVENKIPEAWDGLELPQGERVEPSLRVEGDKIARLREDFAEVPNIPSII
YYCRRNPGEPHISPKAGNMNSVLFPEDPVDEDILNGARFVVINDARHAFE
PEYLQRVLPYFFELKKIDGKFKYVTAPRIAFCQVPQRFVDRGDGDPFGNR
SAVMFDVTNIGRDGMGGVMSCGQGSIWRVDVLRDGVTSDGKRGVDAMEVR
SLVGTKLGYSQLSRIEDTMTSIGMFSRGFKSVYINEEDELLGRCTQEPDS
MDWRIKQLFRWHYGAVELFGMGIFKLQEGRFPSIWHRIYVWEACTYFFQA
ISAQIFLMMPIWYCFTWSPPFTTYKVEFIGYLIPYFLTAILPTMIGLGWR
KVNPDLALREEQVWMATSYVQLYAFISSVFQRIKRATTALGRDSAAASNW
NIDCPTWPLYTMFALQAAGVVVTSVRWFRLSFEQPWVWMSSMGGALMALW
MLWPVVVKGLRLPALSKFYMRYLALGAFIVIVAAWQD*

mRNA from alignment at chr28:121042..128996+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO28G00320.1 ID=NO28G00320.1|Name=NO28G00320.1|organism=Nannochloropsis oceanica|type=mRNA|length=7955bp|location=Sequence derived from alignment at chr28:121042..128996+ (Nannochloropsis oceanica)
ATGGCGATGAACTTTTTGCGGAAAGCCTACGTCCCGACCAGCAACACTGA
CCGCGATGGGTGCGTAATGAGGAGGGAAGGAGGGAGGGAGGGAGGAAAGG
GGAGGAGAGGAGATGGGACAGAGGGAGGGGGCGAGGGAGGGAGGGAGGGA
GGGAGGGGAGGAGAGGGGAGGGATGAGAGGGGAGCGAGGGAAAGAGGGAG
GGAGTGATGGAAGGGAGTGAATAAGCAGACCTCTCATTATGCCGCCACAC
ACGCATACAAACCCACACACACATGTATCTACACACACGTTCTCACCCTT
TCGTCCTCTTTTTCCTCCTTGCCTCCCTCCATTGTCTTTGCCACCTTCCA
GGGACGAGGATGACGACGCCCTGCAGATGAATGAGTCGGACATATTTAAG
GCAATGAACCAGCTGCAGCACGATGACTCGATGCCGCAGGAGACACGGGA
TCTAATAAATCAGGTAGGGAGGTAGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGAAGAGAGGGCGGTAAATGAGCTTTGGGAAGGGAGT
TTCGCCTGGTGGGACCGGTAGGGCCGGGGAGGGAGGGAGGGGAGCAGGAG
GAGGAGGAAGAAGAAGAAGAGTGCAAAGGCGAATATCTTTCGGCCGTTAC
ACGCATCCATCTATCACATCTGCTGACGCAATCCACCATTTCGTCCGTCC
TTCCCTCCCTTCTTCAGATCTCCCAAAAGTTTGATCACAATAGCAGCATG
CACGACATAGGTGCGTCCCGAGGAGGGAGGGAGGGAGGGAGGAAGGAAAA
GGGCGTGTGCGTATCCACCTTGAGAAGGGGAGAGGGGGGGAAGGAGGGAG
AGGGGGAGAGGGAAGGGAAAGAAGGAAGAAAGGAGAGGAAAGCATACGCG
TGCAGGCAGATTAAATTCTCGCATTTTTCACCCAATTTCCCTTCTTCCCT
CCCTCCCTCCCTCCCTCGCTACCTCCCTCCGTCAATCAGACGATGTGTCT
TCTCCCTTGGACAGTGAGATAGAGTCAATCCCCTCACCCACGGCTTCGGA
CATGAGCGAGCTCGGCCAGGGGGCCACGAACCCCAAGACGGTGAGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGTCAGGATGTTGGCATGAG
CGTGTGAGAATCAGTATGCGCTTGCTACTCTCTGTTGCTCTCCTTTCTCA
TAGAATTTCTCCCTTCTCCTCCCCCCCCTCCAACTGCTGGTGCTGCTGCT
GCTTCTCCTCTTCCTCCTGCTCCTCCTTCTCAATCTCCTCCTCCTCCTTT
CCCTCCTTGTGAACAGGTGGATGCCATCAAGCAAATCACCCACCTCCTTC
ACGGAGTGGCCAGTCGTCAGACCCACACCAACCACGGTACCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCCCGCCCGTCAAGACAGATCCCTC
ATTCCTCTCTCTCCCTGTCTCCCTGTCTCCCTCCCTCCCTCCCTCCCCTT
CCCTCCCTCCCTTCCTCCCTCTCTACCCTCCAGGCCCTGCGGACATGCCT
GACCGAGATTTCCTCCACGCTAAGGGCGTAGCGGCGTTTGCAGGATACCC
GGCAAAATCCGTTTATCAGGAGGGAAACGGTTTTGATGCCGTTCCCGATA
TGTACGTTGGGAGGGAGGGAGCAAGGAAGAGAGGGAGAAAGGGAGAGAGA
GAGTAAATAAGCGGGAGAGTGGGAAGGAGGAGAAAGAAGACGCCTTCCCA
ACTGATGTGTTTATATATGTGTGCCTATATACGTGTGTGTATCAAATGCG
CATGTATGTGTGTGTGTATATATATATATATACGTATCCATTTCTTACAC
ACGGCGTGTCTTTCCTCTTTCTGACAGCTCGGCGGAGCTCGATCACTCCA
CTGGCCCAAGCACGCCGGTCAACTACAAGGAGGTAGGCCCAAGCCCACAA
GCCCTCCCTCCCTCTTTCCCTCCTTCCAGCTCCTTCTCCCTCCCTTCCTC
CCTTCCTATCTCTTTTTCAACGTGACATAAAAACTCAACTCTTCCTTCCT
ACCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCAGGCCAAGAACCC
CCAAGACTTCAAGTATCATCCTTCGCGCAATTTCCTCATCGGCGTCTCCG
TCATCAACATCATCTGTGGCATCCTGTACATCTACTGGCGCTGCACCCGG
TACGTCGTTGCCCTTCCTCCTCCCCTCCTTCCCTTCCTCCTTTCTCCCCC
TTCTCGTATGTATTCTTTTCTTTCTTGCATGTCTTCTTTTCGTCCCTACT
TCCTTCTCCTCCTCCCTCCCTTCCTCCCTCTCTCTCTCTCTCTCTCTCGT
ATACCTTCCTTTCTTCCCTCTTCATCATCCTCCTCGTGTCCGCCTCATCA
AGGCCATCATTATGACCCCCATACCATATCTCTCCATCTCCCAAAACCTC
ACCAATCACCCTCCCTCCCTCCCTCCCTCCCTCCCAGCTCCATGACCGGC
GTGATGCACTCGTGGTTTGCGTGGGTCTTTTTGTTCGGAGAGATCGTCAT
CACCCTCTCGGCGTGGCAGTCCCACTGCTCCCGCTTCTTTCCCGTCAAGC
GCACGCGCTGCACAGTCGACGACCTGGTACGTTTCCCCTCCTTCCCTCCC
TCCCCCCCTCCCTCCTTCCCTCCCTCCCCCCCTCCCTCCCTCCCTCCCTC
CCTCCCCCCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCGTGAAT
GAAAAGTGGGCAGAACCGTCGCCCCTCCGATCACCTCTTCTGACCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCCTCCCTCAGGTGAAG
GTGGACAAGACCCTCTCCGTTCGAACGCCGGTGACGATTTTCCTGCCCAC
GGCCGGCGAGTCCCTTCATGTCCTGCGTCAAGCACTCCTGTCACAGGTAG
GGAGGGAGGGAGGGAGGGGTGGAATATGCGCAGAACTGCCTCATTGTGCT
TCTTCGTATCAACCACTTGGATACGAACACCTAACCTTTCTTGCCCTTCC
CCGCCCTGCCCTCCCCCTCCCTCCCTCCTTGTAGCTCTCTATGCGGCTGT
GGCTGTCGGATCTGGAGCCTCGTCATCAACTGCGAGTCATCGTTCTCGAC
GAGGTAGAAAGGGAGGGAGGGAGGGAGGGAGGGAGAGAGGGAAGGCACAG
GGGCCCCGATGAGACGAGAAACCGACAATTGGAGAAGACGACCTCTTACC
CCCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCAGAAAC
GTCGTCTGGAGTTGATTTGTCTCGTGGCTCTTTGCTACAAATTCGCTGCC
ATGTTTGCAAACAACCCCCAGGTCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCATGTCTCCAAGGTGCAAACGTAA
CGCCTGAATTACGTGACTCCCAAGAGGACTCACCCCTCCCTCCCTCCCTC
CCTCTCTCTAGATTAAGCTGATGATGAAACGGGACCGCGTGCCGGAAATT
ACTTCGCGCGGTTTTTACCGCTTTTATGAGCAGGTAGGGAGCGAGGGAGG
GAGGAATTTGGGGAGAGGAAATATTGAGGGAAGGGAGGGAAGGGAGGGAG
GGAGGGGTGAGTCGTCTTGAGAGTCATGTGATTCATGCGTTAGGTCTGCA
CCCTCGAGACATGGGAGGGAGAGAGGGAGGGAGGGAGGGAGGGAGAGAGG
GAGAGAGGGAGGGAGGGAGGGAGAGAGGGAGAGAGGGAGGGACTGAATTA
GGGAGGAAATATGGAGGGACGGATGGAGGGAGGGAGAGAGGGAGGGAGGA
AAAGGAGGATGCGCTGTGTCCAATGATCTGATCCCCCGGCCCTCCCTTCC
TCCCTTCCTCCCTCCCTTTCTCCCTCCCTTCCTCAGTGCGCGGCGCAGTT
CGGGCGTCGGTGGCACGGGGTCTACACCGAGGCCTTCGCTGTGGCGGCCA
TGATTGAAAAACTGTGTGTGGAGAACAAGGTAAGGAGGGAGGGAGGGAGG
GAGGGAGGGCCTGGAGCAAGACAAAGAAAGCCTCTTGTTTTGTTTATTTT
CCTCTGACATAAATGGAGCGACTCATCCTCCCTCCCTCCCTCCCTCCTTC
CCTCCCCCCCTCCTTCCTTTCCCAGATCCCCGAGGCCTGGGACGGGCTGG
AGCTTCCTCAAGGCGAGCGAGTAGAACCTTCTCTGCGCGTGGAAGGCGAC
AAGGTGGGCACTACCCCCCTCCCTCCGCCCCTCCCTCCTTTTCACGTCCG
TCTCACCTCTGACTTTATGACTCATTTCCCTCCCTCCCTCCCTCCCTCCC
CCCTTCCTAGATCGCGCGTCTCCGTGAAGATTTCGCCGAGGTGCCCAACA
TCCCGTCCATTATTTACTACTGTCGCCGTAATCCAGGGGTAGGGAGGGAG
GGAGGGAGGGAGGGAGGGAGGGTTGAAGAGAGGATTGTATTAAACTTGTC
TGCATGGTCGGATGTGTGCATAACAAGAAATGGTGGGAGGGAAGGAGGGA
GGGAGCGAAGAAAGAAGGAGAAGACGGGCACGAATTCTGACGCCTCGCTC
CCTTCTTCCCTCCCTTCCTCCCTCCCTCCCTCCAGGAGCCTCACATCTCT
CCCAAGGCCGGGAATATGAACTCCGTCCTCTTTCCCGAAGACCCCGTGGA
CGAGGACATTCTGAATGGAGGTAAGGGGGGAGGAAGGGAGGGAGGGAAGG
AGGGTTGCGTCTGTGGTTATGCGCCTGCATTAAAAAAAATCACCTTTACT
TACCTCCCTCTCTCCATCCATTCATCCCTTTCTCCCTCTTCCACCCTTTC
CCATCTCCTCCTTCTTTCCCACCATCGATTCCATCTTTGTTCTTCCCCGT
CCCTCTCCTCTTCCTTCTCTTCCCCTTCCTCTTCTTCCCGATCCATCACC
GCCAATCCCTCACCCAAAAAGCGCGTTTTGTGGTGATCAACGACGCCCGA
CACGCCTTCGAACCCGAGTACCTCCAGCGTGTCCTCCCCTACTTCTTCGA
GCTGAAAAAGGTGGGCAGAAGGAAGAGGGAACGAGGAAGGGAGAAAGGGA
GGGAAGGCTAGGCAGGTGCTTAAGTGTTGTGCCGTAATAGCCTCACAAAC
TATGAAATCTCACATCATCTTTCCTTTCCGCCCTCCCTTCTTCCCTCCCT
CCCTCCCTCTTTAGATCGATGGAAAATTTAAATATGTAACGGCTCCCCGC
ATCGCCTTCTGCCAAGTGCCCCAACGGTGAGCCACGCCCTCCCTTTCTCC
CTCCTGCTTTCCCTGCCTCCCACCCTCCCTCTGTACTCTGTTTCTCATCC
CTCTCTCTTCCTTCCCTCCTTCCCTCCTTCCCTCCCTCCCTCCAGATTTG
TGGACCGCGGTGATGGTGATCCCTTCGGCAATCGCTCAGCCGTCATGTTT
GACGTCACCAACATTGGTAAGCCTTCTCTCCCTCCCTCCCTCCCTCCCTC
CCTCCGTCCCTCCCTCCCTCCTTTCAGATGCCTGGGCAGATGTCCTCATC
CCTCTTTCCCTCCTTCCTATCCCCCCCTCGTCGTGCACCAATCACCCCAG
GGCGTGATGGCATGGGAGGGGTGATGAGCTGCGGGCAGGGTTCCATTTGG
CGCGTGGACGTACTCCGGGACGGTGTGACTAGTGACGGGAAACGAGGCGT
GGATGCCATGGAGGTACGTCCTTTATTTATCATACCAAATTTATTCATTC
ATTTATTTGTTCAAACATGCATGTTTTTAATCCATTTTATTTATTTCAAT
CAATTTTTATTTCATTTTATTCATTATTTGTTTATTTTTTATTTATTTTT
GTTATTTGTATTAAGGCTTTCCCACTACCCCTCTTTTCTTCGTTTTCTAT
CCTTTCAAATACTATTCCTTTTTGAAATGTCTTCTTCTCGTCTCTCCCTC
TCGTTCATTATTTTTGTTTATTTATTCTTACCGACTAATGAACCTTTACA
CCTGTCACCCCCCCCTGCCCTACTGTAATGCCTCCTCCAGGTGCGTTCCC
TCGTCGGCACCAAGCTCGGATACTCCCAGCTATCCCGTATCGAGGACACT
ATGACCTCCATCGGCATGTTTTCCCGAGGATTTAAGTCCGTGTATATTAA
CGAGGAGGACGAGCTCCTGGGTCGGTGCACGCAAGAACCGGATTCGATGG
ACTGGTATGACGCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTTC
CCTCTTTTTATGAAGCCTTCCTTCCTTCCCCCCTCCCTTCCTCCCCCTTT
TTCCTCCCCATCTCGTCCGCCTCGTCGACTCCTACCAACTTCCCACTGCT
TTCCTTCACCTCACGCTCACGTTTTCCATCCCCTCCCTCCCTCCCTCCCT
CCCTCTACCCAGGCGTATCAAGCAGCTCTTCCGTTGGCATTACGGTGCCG
TTGAATTATTTGGCATGGGCATTTTTAAGCTTCAAGAAGGACGATTCCCC
TCCATCTGGCACCGCATCTACGTGTGGGAGGTACGAGGTGTTCCCTCTCT
CTCTCTCGCCCCCCCTCCCATCCTCCTTCCCTCCTTCCCACCTCATCATT
TCTGTCCATCATGTCATCGAAGCCGTCATTCTGCCACTCATCACTCCCAT
CCCCCACATACCCACGACCCACCTCCCCCCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCAAGGCCTGTACCTACTTC
TTTCAAGCCATTTCCGCACAGATTTTCCTAATGATGCCCATTTGGTACTG
CTTCACATGGTCTCCGCCCTTCACCACCTATAAGGTGGAGTTCATCGGGT
GAGCCCTCTCTCCCACCCTCCCGCCCTCCTTTCTTCACATATCCTCTCTT
TTACATCTGCCCACCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCATCA
CTGCATATCTTTCTTGTCATCCCACCCGCTATTCCAACCCCCCCATTTCT
CATACTTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCCAGATATCTCATTCCTTACTTCTTGACGGCCA
TCCTTCCCACCATGATCGGGCTGGGCTGGCGCAAGGTTAATCCCGACCTG
GCCTTGCGAGAGGAACAAGGTAGGTACACCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTTCCTTCCTTCCTTCCTTCTTTTTTTCATGCGTCGTTCACC
CTTCCCTCCCTCTCTCCCTCCCTCCCTTCCTCCCTCTCTCCCTCCTTCTC
AGTCTGGATGGCCACCTCCTACGTCCAGCTCTACGCCTTCATCTCGTCCG
TTTTTCAACGGATTAAACGGGCCACAACGGCTCTGGGACGCGACTCGGCC
GCTGCCTCCAACTGGAATATCGACTGTCCCACGTGGCCGCTCTACACAAT
GTTTGCCCTTCAAGCTGCAGGGGTAAGTCTTTTCCCTCATCCTTCCTCCC
TCCCTCCCTCCCTCCCCCTCTTTCTCATTGTTCTTGCCTGTGGTCTTGCC
CCTCCCCCCCCCCTCCCTCCCTCGCTCCCTCGCTCCCTCCCTCCCTTCCT
CCAGGTGGTGGTGACCTCAGTGCGTTGGTTTCGCCTCAGTTTCGAGCAGC
CGTGGGTATGGATGTCATCAATGGGAGGTGCATTAATGGCTTTATGGATG
CTCTGGCCCGTCGTCGGTACGTCCCGTCCCTCCCTCCCTCCCTCCCTCCC
TTCCTTCCTCCTTCGTCGTTGCTGGGTACGCTTGTCCATGGCATCACTCT
GACACCTCCCCTCCCTCCCTCCCTCCCTTCCTTCCTTCCTCCCTCTCTCC
CTCGTCACAGTCAAGGGATTGAGACTTCCAGCGTTGTCCAAATTTTATAT
GCGGTATTTGGCATTAGGTGCCTTTATCGTCATTGTGGCCGCTTGGCAAG
ACTAG

Coding sequence (CDS) from alignment at chr28:121042..128996+

>NO28G00320.1 ID=NO28G00320.1|Name=NO28G00320.1|organism=Nannochloropsis oceanica|type=CDS|length=2664bp|location=Sequence derived from alignment at chr28:121042..128996+ (Nannochloropsis oceanica)
ATGGCGATGAACTTTTTGCGGAAAGCCTACGTCCCGACCAGCAACACTGA
CCGCGATGGGGACGAGGATGACGACGCCCTGCAGATGAATGAGTCGGACA
TATTTAAGGCAATGAACCAGCTGCAGCACGATGACTCGATGCCGCAGGAG
ACACGGGATCTAATAAATCAGATCTCCCAAAAGTTTGATCACAATAGCAG
CATGCACGACATAGACGATGTGTCTTCTCCCTTGGACAGTGAGATAGAGT
CAATCCCCTCACCCACGGCTTCGGACATGAGCGAGCTCGGCCAGGGGGCC
ACGAACCCCAAGACGGTGGATGCCATCAAGCAAATCACCCACCTCCTTCA
CGGAGTGGCCAGTCGTCAGACCCACACCAACCACGGCCCTGCGGACATGC
CTGACCGAGATTTCCTCCACGCTAAGGGCGTAGCGGCGTTTGCAGGATAC
CCGGCAAAATCCGTTTATCAGGAGGGAAACGGTTTTGATGCCGTTCCCGA
TATCTCGGCGGAGCTCGATCACTCCACTGGCCCAAGCACGCCGGTCAACT
ACAAGGAGGCCAAGAACCCCCAAGACTTCAAGTATCATCCTTCGCGCAAT
TTCCTCATCGGCGTCTCCGTCATCAACATCATCTGTGGCATCCTGTACAT
CTACTGGCGCTGCACCCGCTCCATGACCGGCGTGATGCACTCGTGGTTTG
CGTGGGTCTTTTTGTTCGGAGAGATCGTCATCACCCTCTCGGCGTGGCAG
TCCCACTGCTCCCGCTTCTTTCCCGTCAAGCGCACGCGCTGCACAGTCGA
CGACCTGGTGAAGGTGGACAAGACCCTCTCCGTTCGAACGCCGGTGACGA
TTTTCCTGCCCACGGCCGGCGAGTCCCTTCATGTCCTGCGTCAAGCACTC
CTGTCACAGCTCTCTATGCGGCTGTGGCTGTCGGATCTGGAGCCTCGTCA
TCAACTGCGAGTCATCGTTCTCGACGAGAAACGTCGTCTGGAGTTGATTT
GTCTCGTGGCTCTTTGCTACAAATTCGCTGCCATGTTTGCAAACAACCCC
CAGATTAAGCTGATGATGAAACGGGACCGCGTGCCGGAAATTACTTCGCG
CGGTTTTTACCGCTTTTATGAGCAGTGCGCGGCGCAGTTCGGGCGTCGGT
GGCACGGGGTCTACACCGAGGCCTTCGCTGTGGCGGCCATGATTGAAAAA
CTGTGTGTGGAGAACAAGATCCCCGAGGCCTGGGACGGGCTGGAGCTTCC
TCAAGGCGAGCGAGTAGAACCTTCTCTGCGCGTGGAAGGCGACAAGATCG
CGCGTCTCCGTGAAGATTTCGCCGAGGTGCCCAACATCCCGTCCATTATT
TACTACTGTCGCCGTAATCCAGGGGAGCCTCACATCTCTCCCAAGGCCGG
GAATATGAACTCCGTCCTCTTTCCCGAAGACCCCGTGGACGAGGACATTC
TGAATGGAGCGCGTTTTGTGGTGATCAACGACGCCCGACACGCCTTCGAA
CCCGAGTACCTCCAGCGTGTCCTCCCCTACTTCTTCGAGCTGAAAAAGAT
CGATGGAAAATTTAAATATGTAACGGCTCCCCGCATCGCCTTCTGCCAAG
TGCCCCAACGATTTGTGGACCGCGGTGATGGTGATCCCTTCGGCAATCGC
TCAGCCGTCATGTTTGACGTCACCAACATTGGGCGTGATGGCATGGGAGG
GGTGATGAGCTGCGGGCAGGGTTCCATTTGGCGCGTGGACGTACTCCGGG
ACGGTGTGACTAGTGACGGGAAACGAGGCGTGGATGCCATGGAGGTGCGT
TCCCTCGTCGGCACCAAGCTCGGATACTCCCAGCTATCCCGTATCGAGGA
CACTATGACCTCCATCGGCATGTTTTCCCGAGGATTTAAGTCCGTGTATA
TTAACGAGGAGGACGAGCTCCTGGGTCGGTGCACGCAAGAACCGGATTCG
ATGGACTGGCGTATCAAGCAGCTCTTCCGTTGGCATTACGGTGCCGTTGA
ATTATTTGGCATGGGCATTTTTAAGCTTCAAGAAGGACGATTCCCCTCCA
TCTGGCACCGCATCTACGTGTGGGAGGCCTGTACCTACTTCTTTCAAGCC
ATTTCCGCACAGATTTTCCTAATGATGCCCATTTGGTACTGCTTCACATG
GTCTCCGCCCTTCACCACCTATAAGGTGGAGTTCATCGGATATCTCATTC
CTTACTTCTTGACGGCCATCCTTCCCACCATGATCGGGCTGGGCTGGCGC
AAGGTTAATCCCGACCTGGCCTTGCGAGAGGAACAAGTCTGGATGGCCAC
CTCCTACGTCCAGCTCTACGCCTTCATCTCGTCCGTTTTTCAACGGATTA
AACGGGCCACAACGGCTCTGGGACGCGACTCGGCCGCTGCCTCCAACTGG
AATATCGACTGTCCCACGTGGCCGCTCTACACAATGTTTGCCCTTCAAGC
TGCAGGGGTGGTGGTGACCTCAGTGCGTTGGTTTCGCCTCAGTTTCGAGC
AGCCGTGGGTATGGATGTCATCAATGGGAGGTGCATTAATGGCTTTATGG
ATGCTCTGGCCCGTCGTCGTCAAGGGATTGAGACTTCCAGCGTTGTCCAA
ATTTTATATGCGGTATTTGGCATTAGGTGCCTTTATCGTCATTGTGGCCG
CTTGGCAAGACTAG

Synonyms

Publications