NO28G00250.6, NO28G00250.6 (mRNA) Nannochloropsis oceanica

Overview
NameNO28G00250.6
Unique NameNO28G00250.6
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1567
Alignment locationchr28:97949..100104 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:97949..100104 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO28G00250.6 vs.
Match: WP_108075321.1 (KR domain-containing protein [Vitiosangium sp. GDMCC 1.1324]; PTL77383.1 short-chain dehydrogenase [Vitiosangium sp. GDMCC 1.1324])

HSP 1 Score: 207.2 bits (526), Expect = 5.500e-50
Identity = 109/205 (53.17%), Postives = 151/205 (73.66%), Query Frame = 0 
Query:   13 LQNKVIVITGASSGIGLALAKRACVLGAMVVLAARSEDKLLSLAGELGKERALPVVMDVTHRQEHSMLLEKAVATFGHVDVWVNNAGRGINKSILDVTEEDFDEMMNVNAKSAMFGMQAAYPYFVQQKEGHIINLSSVLGRLPFPPQRSLYSASKHALNAITTSFRLEAEKEEGKEGGAKVKVSSVSPGMVGTEFGINVVGGGRE 218
            +  KV+VITGAS+GIG ALA++A   G  VVLAAR E +L  +A  +G E ALPVV DV+ R++   +++ A+A FG VDVWVNNAGRGI+K + ++T+EDFDEMM VN KSA++G+QA  P+F  +  GHIIN+SS+LGR+P+ P RS Y+A+KHALNA+TT+ R     +E +E    + V++  PG+V TEFG+N +GGG +
Sbjct:    1 MDKKVVVITGASAGIGAALAEQAGRKGWQVVLAARREPELRQVAARVGPE-ALPVVADVSRREDVQRVMDAALARFGQVDVWVNNAGRGISKLVSELTDEDFDEMMRVNVKSALYGIQAVLPHFQSRGRGHIINVSSMLGRVPYVPVRSAYNAAKHALNALTTNLR-----QELRERYPGIHVTTFLPGVVATEFGVNALGGGMD 199
The following BLAST results are available for this feature:
BLAST of NO28G00250.6 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
WP_108075321.15.500e-5053.17KR domain-containing protein [Vitiosangium sp. GDM... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO28G00250NO28G00250Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO28G00250.6NO28G00250.6-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO28G00250.6.cds1NO28G00250.6.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00250.6.cds2NO28G00250.6.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00250.6.cds3NO28G00250.6.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00250.6.cds4NO28G00250.6.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO28G00250.6 ID=NO28G00250.6|Name=NO28G00250.6|organism=Nannochloropsis oceanica|type=mRNA|length=1567bp
CGGGAAGCTCGAAGTTTGGACGCATGCGTCACTGTGAGAATTTTGCCAAC
TTTGCGGTGGGTTTCCTCTGCAGCTCCTCACACGCTGATTTCTCTGTATT
GCATCGGCAGCCCTTTTTCACAAGAGAGCTGGTATCCAACAACCTCCCCA
CCCTCTCTCCCTCCCTTCTTCCTCCCCTCAAGGTCAGGCATTAAAGGATG
CTACCGTCTGCCTCATCCCCTATGCCAGCGTCCCTTCAAAACAAAGTCAT
TGTCATCACGGGCGCATCGTCAGGCATTGGACTGGCCCTCGCCAAGCGTG
CATGTGTCCTGGGAGCCATGGTGGTGTTGGCAGCGCGCTCCGAGGATAAG
CTCTTGTCCTTGGCAGGAGAGCTGGGAAAAGAAAGGGCGTTGCCTGTGGT
GATGGATGTGACGCATCGACAGGAGCACTCAATGCTCCTGGAAAAGGCCG
TGGCGACGTTTGGCCATGTGGATGTGTGGGTGAATAACGCAGGACGGGGC
ATTAACAAGTCAATCCTGGACGTGACTGAGGAAGATTTCGACGAAATGAT
GAATGTAAACGCAAAGAGCGCCATGTTTGGCATGCAGGCCGCCTATCCTT
ACTTTGTGCAACAGAAGGAGGGCCACATCATCAACCTCTCTTCAGTGCTG
GGCCGCCTCCCCTTCCCTCCTCAACGCTCTCTCTACAGCGCGAGTAAACA
CGCTTTGAACGCCATCACCACCTCTTTCCGACTCGAGGCGGAGAAGGAGG
AAGGGAAAGAGGGAGGGGCGAAAGTCAAGGTGTCCTCGGTGTCACCTGGG
ATGGTGGGGACCGAGTTTGGAATCAATGTGGTAGGGGGAGGGAGGGAGAA
AGGAATAGGAGGAGGGAGAGGGAACGGGGTCAGGAAAGATTTTCCCTGCT
AGCTTTGCAAGCGCAGAGGGCAATTGGTGAATGTCGAGAGATCCCTCCCA
TCCATCCCTCCCTCCCTCCCTCCCTCCCTCCCTTTCTCCCTCAGCTCGGG
CCTCCAGGAGCAGATTCTCGCCTCTTGCCGGCAGCACAGCCCGTAGGAGA
AGTGGTCGACGTCGTAGTCGACCTTATCCTCAAGTGTGTGCCTCGCAGTC
TTACTCTACCTCTTCCCTCCCTCCTTCCCTCCTTTTCTCCCTCCTATCAT
GCTTGTCACCCATTGACTGGGACGCGGCCGCCCCTGGAGGACGTGAAGCA
AGCCATGTCCGACCTTATCCCCAAGTACTTCTCCATCACATTCTTCCCCT
TGCACCACTCCATCTTTTCTTCCCTTCGTTCCATCCATCTTTGTCTTATC
TCTCTTCCTGCTTTCCTCCCTCCCTCCCTCCTAGACCACAAGCTGACGTG
TATACCAAGCCAGAACACAAAAAATGGGTGGAGGAGTATTTTACCGCGGA
TCGGATGGAGGACGTGGAGAGAAGCCGAGTGCCTTGGACCAATGTCAAGT
AGATGTGACTTCATCACCAATCAGGACTGCTTTCGTCTCTTTCTCATCCA
AAACAATACGGGAAAATAGAGGGAAGAGGAGGCAAAATGAAGAAAAGAAA
CAAAAAAGAGAGCAAAG
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protein sequence of NO28G00250.6

>NO28G00250.6-protein ID=NO28G00250.6-protein|Name=NO28G00250.6|organism=Nannochloropsis oceanica|type=polypeptide|length=235bp
MLPSASSPMPASLQNKVIVITGASSGIGLALAKRACVLGAMVVLAARSED
KLLSLAGELGKERALPVVMDVTHRQEHSMLLEKAVATFGHVDVWVNNAGR
GINKSILDVTEEDFDEMMNVNAKSAMFGMQAAYPYFVQQKEGHIINLSSV
LGRLPFPPQRSLYSASKHALNAITTSFRLEAEKEEGKEGGAKVKVSSVSP
GMVGTEFGINVVGGGREKGIGGGRGNGVRKDFPC*
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mRNA from alignment at chr28:97949..100104+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO28G00250.6 ID=NO28G00250.6|Name=NO28G00250.6|organism=Nannochloropsis oceanica|type=mRNA|length=2156bp|location=Sequence derived from alignment at chr28:97949..100104+ (Nannochloropsis oceanica)
CGGGAAGCTCGAAGTTTGGACGCATGCGTCACTGTGAGAATTTTGCCAAC
TTTGCGGTGGGTTTCCTCTGCAGCTCCTCACACGCTGATTTCTCTGTATT
GCATCGGCAGCCCTTTTTCACAAGAGAGCTGGTATCCAACAACCTCCCCA
CCCTCTCTCCCTCCCTTCTTCCTCCCCTCAAGGTCAGGCATTAAAGGATG
CTACCGTCTGCCTCATCCCCTATGCCAGCGTCCCTTCAAAACAAAGTCAT
TGTCATCACGGGCGCATCGTCAGGCATTGGACTGGCCCTCGCCAAGCGTG
CATGTGTCCTGGGAGCCATGGTGGTGTTGGCAGCGCGCTCCGAGGATAAG
CTCTTGTCCTTGGCAGGAGAGCTGGGAAAAGAAAGGTTCGTCCTCGATCA
CGGTAAAATGTGATCGACAAGACGTGAAAGGGAGGTCAGCTTTTTGCCCA
CATTGCCACAATTGCACAGGGCGTTGCCTGTGGTGATGGATGTGACGCAT
CGACAGGAGCACTCAATGCTCCTGGAAAAGGCCGTGGCGACGTTTGGCCA
TGTGGATGTGGTAAGAAAAAGGGGTCTCATTTAAGGAGGGTGGGGAGGAC
GAAAGCACGGTGGATGGACGAAATCCTGGGTGGTGGCTGGATGAAGAAAA
GAAGTGGGTTAGATCCGGCAGCATTCGCTGACATTCCCGTCCTCTCTCTG
GCCCTCCCTCTCTCAAATTATTCCTCAGTGGGTGAATAACGCAGGACGGG
GCATTAACAAGTCAATCCTGGACGTGACTGAGGAAGATTTCGACGAAATG
ATGAATGTAAACGCAAAGAGCGCCATGTTTGGCATGCAGGCCGCCTATCC
TTACTTTGTGGTGAGAATCGAAGGGAGGGAGGGAGGGAGGGAAAAATTCG
GAATATCCTGGGCAGGGCCATTTCGGCTCATCAAACCACCATCCAGCCAT
CTTGTCAGTCTCTCCTACGTCCAACCCTCGTTCTCCCCTTCATGCCGTTC
CATAGCAACAGAAGGAGGGCCACATCATCAACCTCTCTTCAGTGCTGGGC
CGCCTCCCCTTCCCTCCTCAACGCTCTCTCTACAGCGCGAGTAAACACGC
TTTGAACGCCATCACCACCTCTTTCCGACTCGAGGCGGAGAAGGAGGAAG
GGAAAGAGGGAGGGGCGAAAGTCAAGGTGTCCTCGGTGTCACCTGGGATG
GTGGGGACCGAGTTTGGAATCAATGTGGTAGGGGGAGGGAGGGAGAAAGG
AATAGGAGGAGGGAGAGGGAACGGGGTCAGGAAAGATTTTCCCTGCTAGC
TTTGCAAGCGCAGAGGGCAATTGGTGAATGTCGAGAGATCCCTCCCATCC
ATCCCTCCCTCCCTCCCTCCCTCCCTCCCTTTCTCCCTCAGCTCGGGCCT
CCAGGAGCAGATTCTCGCCTCTTGCCGGCAGCACAGCCCGTAGGAGAAGT
GGTCGACGTCGTAGTCGACCTTATCCTCAAGTGTGTGCCTCGCAGTCTTA
CTCTACCTCTTCCCTCCCTCCTTCCCTCCTTTTCTCCCTCCTATCATGCT
TGTCACCCATTGACTGGGACGCGGCCGCCCCTGGAGGACGTGAAGCAAGC
CATGTCCGACCTTATCCCCAAGTACTTCTCCATCACATTCTTCCCCTTGC
ACCACTCCATCTTTTCTTCCCTTCGTTCCATCCATCTTTGTCTTATCTCT
CTTCCTGCTTTCCTCCCTCCCTCCCTCCTAGACCACAAGCTGACGTGTAT
ACCAAGCCAGAACACAAAAAATGGGTGGAGGAGTATTTTACCGGTAAAAA
GAGGGGGAAAGATGGAAGGATGGAGAGGAAGGTATAAAAACGAATGGGAG
AAAAGCAGCCAATTCAGCGGAGAAGGCATGGACAATGGAAGGAAGAGAGA
GAGACTGGGAGTGAAAGAGGACAATTACATGGTGGCATGTTTCCGTCATT
CATCACTCTTCTCAATACTCAACAATCTCACACAGCGGATCGGATGGAGG
ACGTGGAGAGAAGCCGAGTGCCTTGGACCAATGTCAAGTAGATGTGACTT
CATCACCAATCAGGACTGCTTTCGTCTCTTTCTCATCCAAAACAATACGG
GAAAATAGAGGGAAGAGGAGGCAAAATGAAGAAAAGAAACAAAAAAGAGA
GCAAAG
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Coding sequence (CDS) from alignment at chr28:97949..100104+

>NO28G00250.6 ID=NO28G00250.6|Name=NO28G00250.6|organism=Nannochloropsis oceanica|type=CDS|length=705bp|location=Sequence derived from alignment at chr28:97949..100104+ (Nannochloropsis oceanica)
ATGCTACCGTCTGCCTCATCCCCTATGCCAGCGTCCCTTCAAAACAAAGT
CATTGTCATCACGGGCGCATCGTCAGGCATTGGACTGGCCCTCGCCAAGC
GTGCATGTGTCCTGGGAGCCATGGTGGTGTTGGCAGCGCGCTCCGAGGAT
AAGCTCTTGTCCTTGGCAGGAGAGCTGGGAAAAGAAAGGGCGTTGCCTGT
GGTGATGGATGTGACGCATCGACAGGAGCACTCAATGCTCCTGGAAAAGG
CCGTGGCGACGTTTGGCCATGTGGATGTGTGGGTGAATAACGCAGGACGG
GGCATTAACAAGTCAATCCTGGACGTGACTGAGGAAGATTTCGACGAAAT
GATGAATGTAAACGCAAAGAGCGCCATGTTTGGCATGCAGGCCGCCTATC
CTTACTTTGTGCAACAGAAGGAGGGCCACATCATCAACCTCTCTTCAGTG
CTGGGCCGCCTCCCCTTCCCTCCTCAACGCTCTCTCTACAGCGCGAGTAA
ACACGCTTTGAACGCCATCACCACCTCTTTCCGACTCGAGGCGGAGAAGG
AGGAAGGGAAAGAGGGAGGGGCGAAAGTCAAGGTGTCCTCGGTGTCACCT
GGGATGGTGGGGACCGAGTTTGGAATCAATGTGGTAGGGGGAGGGAGGGA
GAAAGGAATAGGAGGAGGGAGAGGGAACGGGGTCAGGAAAGATTTTCCCT
GCTAG
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Synonyms
Publications