NO28G00100.2, NO28G00100.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO28G00100.2
Unique NameNO28G00100.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2990
Alignment locationchr28:43687..47284 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:43687..47284 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO28G00100.2 vs.
Match: XP_002288329.1 (predicted protein [Thalassiosira pseudonana CCMP1335]; EED93765.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 168.3 bits (425), Expect = 2.300e-38
Identity = 92/193 (47.67%), Postives = 118/193 (61.14%), Query Frame = 0 
Query:    1 MASCYGGVKGGAIKNDGRKDGHLLPYL-PIQTSLKNGMKVEVDFYR-------ENEYHVGWALLNKELEEGRSWPFWGTMS-FEEFRAYFLSHNAFVVRAVKGGGEACVGAESNGKEGVEGDEGASVLGTYYIKPNFPDRCAHICNGGLITEERMRGHGVGTVMALSFLRIAKDLGYKASYFNLVFGRQLGDI 185
            M + YGG       +DG+ + HLL +L P Q++L +G +VEVDF+R       E+E+  G AL+N  + EGRSWPF    S  E++  YFLSH AFVVRA+  G +A     S+  E         +LG +YIKPNFP RC+HICNGG I   R RG GVG +M   FLR ++DLGYK+SYFNLVF    G I
Sbjct:    1 MTTAYGGTP-----SDGKHNAHLLTHLIPYQSTLSDGRRVEVDFFRHSSTEIEEDEWFAGLALMNLIIREGRSWPFEEEFSSVEQYSGYFLSHTAFVVRALNNGMDASKRNSSSKGE---------ILGCFYIKPNFPGRCSHICNGGFIVAPRFRGLGVGRLMGNVFLRASRDLGYKSSYFNLVFKSNPGSI 179
The following BLAST results are available for this feature:
BLAST of NO28G00100.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_002288329.12.300e-3847.67predicted protein [Thalassiosira pseudonana CCMP13... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO28G00100NO28G00100Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO28G00100.2NO28G00100.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO28G00100.2.cds1NO28G00100.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00100.2.cds2NO28G00100.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00100.2.cds3NO28G00100.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00100.2.cds4NO28G00100.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00100.2.cds5NO28G00100.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00100.2.cds6NO28G00100.2.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO28G00100.2 ID=NO28G00100.2|Name=NO28G00100.2|organism=Nannochloropsis oceanica|type=mRNA|length=2990bp
AGGGCGATGCTAGTGGCGGGTAGGGAGAGGAGGGCCGTGTTTTCCAAGGC
ACGTTTTTGGTTGCGGAGGAGGGTGGAGGTGGATTGCTTGCTTTGGCGTT
TGAGGTCCTGGGAGAGAAGGAGGGAGGAAGGGGGGACGAGGATGAAGAGA
AAGGAGAGATGAAAGCAGGGAAGGAGGGAATGAGCGAGGGAAGGAAGGAG
GGTAAGAGGAAGCCTACCTTAATGTCGATTACCCATCGCACTTTGGTGCC
TTCCTTCGTGTAGGTTACCTCTTGTTGAGGCAAGAGCATGCGCCTGTCGC
CACTGCGAATCGTGCGTGTACCTGAGGGTATGGAAGGTCGCGTTGCCCTA
TCAACTCGCCCTTCCCCCTCCCACCCCCCTCCTCCTTTTCCTCCTCCTCC
TCCTCCTCCTCCTCTACTTCTTCCCAACACTCCATCCTTTCCTCTATAAG
GCGTCATTGGCCTCCGATTATTACTCTCCATCGTCCCTCCCCCTCTATTC
CCGACAATCCGGTTCCATTTCTTGCCCTCCTCCCCCTCCCCTTTCGTCCC
CAAAAGCTTCTCCTTTTCCCTCCGTAATCGCAGGCGTTCTGCTCGCTTGG
CATCATGATATTGCTGGTGTTTGCTTGGAGAGGGCTTGTCCGATGTCGCT
GTGGCTGTCTTTTTTTTTTCAAAGCGTGGTGATCTTGGCGAGGAGGAAGA
GGAGAACGAGGAGGAGGCAGAGGCTGAAGTAGTAAGAGCACACCCGTGCG
AGGGTGAAGGAAAGAGTGAAAGGGACCACCTTCGGGATCTAGACAGACAG
AGAAGACGCAGAGACGACAAAAAATGCTGGGCTGCAATACAGTTGGTACT
GGTGGTGCTGTTGGCTGTCGCACAGGCACCCGTCGAGAGACGGTGCATGG
CTTTGCCTGTCGTGGTGGGTGGATGGGGAGGTTGATGAGATCTCTTGGCA
AGATTTTGGTTTGGAACCGAGGAGATGGGGATATGCGTTCGGTGGGGATG
GAGGGAGAGATAAAGGGGGATTATAAGGAAGGCCTGTTCAGTTTCAAGGG
TGGCTTTACTATCGTTGAGGATGACGGAGACGAACTTGACTTGAATTTAA
AGGGGATGAATGCACCCTCTTGGAGAGCTTCTAAAGGCGCGTACCGAAGC
AGGTTGATACTGCACAATACAGAGCATCTTGTTCCTATGGAAAATTCACG
CATTCTTTTACACACGTGGACGATCTCGGGGCTTGTACGGCTCTGTATAT
GATTCCTTGACCAACTCACAGAAGAGGAATCGATAACCTCCCGCCTCTCA
CTTGCAAGACATACATACACCACCACCACGACCAAGCAGGCATTATCCGC
CGCAGCAGCAGTACAGCAGCAACAGCAGTACAATAGATAGTCCATGGCTT
CTTGCTATGGTGGTGTGAAGGGAGGAGCGATCAAGAACGATGGACGAAAA
GATGGGCATTTGCTTCCCTATTTACCCATACAAACCAGCCTTAAGAACGG
GATGAAGGTGGAAGTCGATTTCTATCGGGAGAATGAATATCATGTAGGCT
GGGCACTTTTGAACAAGGAGCTTGAGGAGGGAAGGTCCTGGCCATTTTGG
GGTACCATGTCCTTTGAGGAGTTCAGGGCCTACTTCCTTTCGCATAACGC
CTTCGTCGTGCGTGCCGTCAAGGGTGGCGGAGAAGCATGCGTCGGTGCTG
AAAGTAATGGAAAAGAAGGAGTTGAAGGAGATGAAGGTGCTTCAGTCCTG
GGCACCTATTACATCAAACCGAACTTCCCGGATCGCTGCGCCCACATATG
TAATGGCGGACTAATTACCGAGGAAAGGATGCGGGGTCACGGCGTGGGCA
CCGTTATGGCTCTCTCCTTCCTGCGCATTGCAAAGGACCTTGGCTATAAG
GCTTCGTATTTTAATCTCGTTTTTGGTAGGCAGTTAGGGGATATATGGAG
AGAGTGAAAGAAGGCAAGAGGGAGGATGAAAACACTCATTGACTCCTCCG
TCTTCCCTTCTGCCTTCCTCTCAGCGACGAATACGGTATCAATCGCGCTG
TGGGAGAAAACCGGCTTTCGGCGTCTTGCCACCATTCCGGCGGCAGCTCG
GCTAAAAGGGGAGGAGAGTCTGGTGGATGCCTACATGTACCACTACGATC
TGACAACGTACACGGAGCTTGGGCCTCTGTCGCTGGAAGACGCCGCTGTG
GAATCGCGGAGGGCCATCGAATTCAGCTAAGCTTGAATAAGTGAGACGTG
ACTGAGTTAGCGTGTCACGTGATCCTGCCACGTGGTGGCGCTTCATCGTA
TTATCTGGGTGAATGTATCGTTATCACAAGGTCTTAAGACTTGCTCACGC
CTCTGCGTTTTTGTGTTAACGTGAGGGATGATGAACCAATGAATGGATGC
ATGAGACTGTCGGGGCGAGTCTCGCTCACAAACTTGATGTGCGATAGAGT
TGTGGTACGCGACAAAAACCATCATGCGGCCGACTCAGACGGGTAACTGT
CTTAAGCCAATCCGCACACAGCTCAAGGACCATCGGCGCCTTGGTATCTC
CCTCTCAGGTAACGATCACTCACCTGTGGGATAGACACTCAAAAATAAAA
CAATAACATCATTTCCTTGAAAACCAAGCCATGCCAGGGCTTCATTTAAT
CGCTATAATAATAAAGGGTTCTAGACACACCCAAGGCATCGTCGGATCTC
CGGATCCGGGGCCAGTATAGTGGCATAAGGGTTGACTGCCCCGCACTTCA
CCTGCATGCCTTTAAATGCGACTGTGCATATGTGATGTGATGGCCTTGCT
GAGAGCCCTTTGCGAACATTACGAGCTCAAAATCAAAAATTACCCTTATC
TCTGCAGCTGCCTCTCTTGAGACCGCACTTTTCCTCTTTCTCCTTGAGTC
CCTCACCGCCTTGGCCCCTCTATTAAAACTATAAAACATTGAATTAAAAA
AGGGAAAAGCGAAGAATGAAGTGTGCTGGATGTGACCAAT
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protein sequence of NO28G00100.2

>NO28G00100.2-protein ID=NO28G00100.2-protein|Name=NO28G00100.2|organism=Nannochloropsis oceanica|type=polypeptide|length=188bp
MASCYGGVKGGAIKNDGRKDGHLLPYLPIQTSLKNGMKVEVDFYRENEYH
VGWALLNKELEEGRSWPFWGTMSFEEFRAYFLSHNAFVVRAVKGGGEACV
GAESNGKEGVEGDEGASVLGTYYIKPNFPDRCAHICNGGLITEERMRGHG
VGTVMALSFLRIAKDLGYKASYFNLVFGRQLGDIWRE*
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mRNA from alignment at chr28:43687..47284+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO28G00100.2 ID=NO28G00100.2|Name=NO28G00100.2|organism=Nannochloropsis oceanica|type=mRNA|length=3598bp|location=Sequence derived from alignment at chr28:43687..47284+ (Nannochloropsis oceanica)
AGGGCGATGCTAGTGGCGGGTAGGGAGAGGAGGGCCGTGTTTTCCAAGGC
ACGTTTTTGGTTGCGGAGGAGGGTGGAGGTGGATTGCTTGCTTTGGCGTT
TGAGGTCCTGGGAGAGAAGGAGGGAGGAAGGGGGGACGAGGATGAAGAGA
AAGGAGAGATGAAAGCAGGGAAGGAGGGAATGAGCGAGGGAAGGAAGGAG
GGTAAGAGGAAGCCTACCTTAATGTCGATTACCCATCGCACTTTGGTGCC
TTCCTTCGTGTAGGTTACCTCTTGTTGAGGCAAGAGCATGCGCCTGTCGC
CACTGCGAATCGTGCGTGTACCTGAGGGTATGGAAGGTCGCGTTGCCCTA
TCAACTCGCCCTTCCCCCTCCCACCCCCCTCCTCCTTTTCCTCCTCCTCC
TCCTCCTCCTCCTCTACTTCTTCCCAACACTCCATCCTTTCCTCTATAAG
GCGTCATTGGCCTCCGATTATTACTCTCCATCGTCCCTCCCCCTCTATTC
CCGACAATCCGGTTCCATTTCTTGCCCTCCTCCCCCTCCCCTTTCGTCCC
CAAAAGCTTCTCCTTTTCCCTCCGTAATCGCAGGCGTTCTGCTCGCTTGG
CATCATGATATTGCTGGTGTTTGCTTGGAGAGGGCTTGTCCGATGTCGCT
GTGGCTGTCTTTTTTTTTTCAAAGCGTGGTGATCTTGGCGAGGAGGAAGA
GGAGAACGAGGAGGAGGCAGAGGCTGAAGTAGTAAGAGCACACCCGTGCG
AGGGTGAAGGAAAGAGTGAAAGGGACCACCTTCGGGATCTAGACAGACAG
AGAAGACGCAGAGACGACAAAAAATGCTGGGCTGCAATACAGTTGGTACT
GGTGGTGCTGTTGGCTGTCGCACAGGCACCCGTCGAGAGACGGTGCATGG
CTTTGCCTGTCGTGGTGGGTGGATGGGGAGGTTGATGAGATCTCTTGGCA
AGATTTTGGTTTGGAACCGAGGAGATGGGGATATGCGTTCGGTGGGGATG
GAGGGAGAGATAAAGGGGGATTATAAGGAAGGCCTGTTCAGTTTCAAGGG
TGGCTTTACTATCGTTGAGGATGACGGAGACGAACTTGACTTGAATTTAA
AGGGGATGAATGCACCCTCTTGGAGAGCTTCTAAAGGCGCGTACCGAAGC
AGGTTGATACTGCACAATACAGAGCATCTTGTTCCTATGGAAAATTCACG
CATTCTTTTACACACGTGGACGATCTCGGGGCTTGTACGGCTCTGTATAT
GATTCCTTGACCAACTCACAGAAGAGGAATCGATAACCTCCCGCCTCTCA
CTTGCAAGACATACATACACCACCACCACGACCAAGCAGGCATTATCCGC
CGCAGCAGCAGTACAGCAGCAACAGCAGTACAATAGATAGTCCATGGCTT
CTTGCTATGGTGGTGTGAAGGTAAAAAAATCCCTCCCTCTTCCATCTCCC
TCCCTCCTCCCCTAAACCCCATTATATATATATATCACCACAAAAGGGAG
GAGCGATCAAGAACGATGGACGAAAAGATGGGCATTTGCTTCCCTATTTA
CCCATACAAACCAGCCTTAAGAACGGGATGAAGGTGGAAGTCGATTTCTA
TCGGGAGAAGTAAGTCAAAGTAAAGGGTTGGGTCGACCAAGTGGGAAGGG
ACATTGGGGAGAAGGGTATTGCGGGCTTACATGGACTTCTGCTTCTGGTT
ATACAACACAGTGAATATCATGTAGGCTGGGCACTTTTGAACAAGGAGCT
TGAGGAGGTAAGCCTCTTAAGGATAGGGGAGGGAAAGAGGGAGAGAGGCA
GTGCGGAGGGATCGTTCCATGCGCTATGTGGTATGCTTATACGTGCGCGG
TGGACACAATTCACAGTCCTCCCTCCATTTGTACTCCCTTGAATTTAAAG
GGAAGGTCCTGGCCATTTTGGGGTACCATGTCCTTTGAGGAGTTCAGGGC
CTACTTCCTTTCGCATAACGCCTTCGTCGTGCGTGCCGTCAAGGGTGAGG
AGGGAGGGAGAAGGGGAAGAAGGTAGGAATACAGGAATGCATAAGGACAT
CATGAGGCTTAAGTCTTGTATGATATCCACGTAACATATATCAGGTGGCG
GAGAAGCATGCGTCGGTGCTGAAAGTAATGGAAAAGAAGGAGTTGAAGGA
GATGAAGGTGCTTCAGTCCTGGGCACCTATTACATCAAACCGAACTTCCC
GGATCGCTGCGCCCACATATGTAATGGCGGACTAATTACCGAGGAAAGGG
TATGTCACATCCTCTCCCTTATTCTGATGCCTCCTTCGAGTATCTGTCCT
TCACTCACTCAGACTCACCTTCTGTCCCTCGCTTGTAGATGCGGGGTCAC
GGCGTGGGCACCGTTATGGCTCTCTCCTTCCTGCGCATTGCAAAGGACCT
TGGCTATAAGGCTTCGTATTTTAATCTCGTTTTTGGTAGGCAGTTAGGGG
ATATATGGAGAGAGTGAAAGAAGGCAAGAGGGAGGATGAAAACACTCATT
GACTCCTCCGTCTTCCCTTCTGCCTTCCTCTCAGCGACGAATACGGTATC
AATCGCGCTGTGGGAGAAAACCGGCTTTCGGCGTCTTGCCACCATTCCGG
CGGCAGCTCGGCTAAAAGGGGAGGAGAGTCTGGTGGATGCCTACATGTAC
CACTACGATCTGACAACGTACACGTGAGAAAGGAAGAAAGGAAGGGAGCT
CTATCTTGGTGTTCTCGATACATCGATATTTTTACGTATTTTGATTTTTT
CTTTCTCCTCCATTTAAACAGGGAGCTTGGGCCTCTGTCGCTGGAAGACG
CCGCTGTGGAATCGCGGAGGGCCATCGAATTCAGCTAAGCTTGAATAAGT
GAGACGTGACTGAGTTAGCGTGTCACGTGATCCTGCCACGTGGTGGCGCT
TCATCGTATTATCTGGGTGAATGTATCGTTATCACAAGGTCTTAAGACTT
GCTCACGCCTCTGCGTTTTTGTGTTAACGTGAGGGATGATGAACCAATGA
ATGGATGCATGAGACTGTCGGGGCGAGTCTCGCTCACAAACTTGATGTGC
GATAGAGTTGTGGTACGCGACAAAAACCATCATGCGGCCGACTCAGACGG
GTAACTGTCTTAAGCCAATCCGCACACAGCTCAAGGACCATCGGCGCCTT
GGTATCTCCCTCTCAGGTAACGATCACTCACCTGTGGGATAGACACTCAA
AAATAAAACAATAACATCATTTCCTTGAAAACCAAGCCATGCCAGGGCTT
CATTTAATCGCTATAATAATAAAGGGTTCTAGACACACCCAAGGCATCGT
CGGATCTCCGGATCCGGGGCCAGTATAGTGGCATAAGGGTTGACTGCCCC
GCACTTCACCTGCATGCCTTTAAATGCGACTGTGCATATGTGATGTGATG
GCCTTGCTGAGAGCCCTTTGCGAACATTACGAGCTCAAAATCAAAAATTA
CCCTTATCTCTGCAGCTGCCTCTCTTGAGACCGCACTTTTCCTCTTTCTC
CTTGAGTCCCTCACCGCCTTGGCCCCTCTATTAAAACTATAAAACATTGA
ATTAAAAAAGGGAAAAGCGAAGAATGAAGTGTGCTGGATGTGACCAAT
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Coding sequence (CDS) from alignment at chr28:43687..47284+

>NO28G00100.2 ID=NO28G00100.2|Name=NO28G00100.2|organism=Nannochloropsis oceanica|type=CDS|length=564bp|location=Sequence derived from alignment at chr28:43687..47284+ (Nannochloropsis oceanica)
ATGGCTTCTTGCTATGGTGGTGTGAAGGGAGGAGCGATCAAGAACGATGG
ACGAAAAGATGGGCATTTGCTTCCCTATTTACCCATACAAACCAGCCTTA
AGAACGGGATGAAGGTGGAAGTCGATTTCTATCGGGAGAATGAATATCAT
GTAGGCTGGGCACTTTTGAACAAGGAGCTTGAGGAGGGAAGGTCCTGGCC
ATTTTGGGGTACCATGTCCTTTGAGGAGTTCAGGGCCTACTTCCTTTCGC
ATAACGCCTTCGTCGTGCGTGCCGTCAAGGGTGGCGGAGAAGCATGCGTC
GGTGCTGAAAGTAATGGAAAAGAAGGAGTTGAAGGAGATGAAGGTGCTTC
AGTCCTGGGCACCTATTACATCAAACCGAACTTCCCGGATCGCTGCGCCC
ACATATGTAATGGCGGACTAATTACCGAGGAAAGGATGCGGGGTCACGGC
GTGGGCACCGTTATGGCTCTCTCCTTCCTGCGCATTGCAAAGGACCTTGG
CTATAAGGCTTCGTATTTTAATCTCGTTTTTGGTAGGCAGTTAGGGGATA
TATGGAGAGAGTGA
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Synonyms
Publications