NO27G01150.1, NO27G01150.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO27G01150.1
Unique NameNO27G01150.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length766
Alignment locationchr27:369371..370438 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:369371..370438 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO27G01150.1 vs.
Match: EWM20983.1 (hypothetical protein Naga_100487g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 277.3 bits (708), Expect = 4.300e-71
Identity = 146/215 (67.91%), Postives = 164/215 (76.28%), Query Frame = 0 
Query:   21 VLVIALLAATASSSSASSPL----GFVPSTQQ--LQQTSSSSSTSCCGGRHPASPAHQHFHASRAAITTKRHALPPFDSPLDPATLESMAATAAASSAAASAGGAIHEVTPEQLWVGFIAGVFPFIWAGYEFWKRIDTQQRCGVCQGSGLVYESATGKSLTTARKCYACGGFLPWAGWKRFWLSNLDIGNGGVLQRPAPDYEALSEAAKRRRAGG 230
            +L+ A L  T S+ +AS PL     F+P+ Q   L      SS SCC  RH A P       S  ++  ++  LPPFDSPLDPATLE MAA   ASSAA S GGA++EVT EQLWVGFIAGVFPF+WAG+EFWKRID QQRCGVCQGSGLVYE+A+GKSL+  RKCYACGGFLPWAGW+RFWLSNLDIGNGGVLQRPA DYEALSEAAKRRRAGG
Sbjct:   32 ILLAAGLLLTTSAVAASVPLRVSNAFLPAPQHQSLHSVHGHSSPSCCERRHQAGPPSPPSSPSPPSVIRRQAMLPPFDSPLDPATLEGMAA---ASSAAGSTGGALNEVTSEQLWVGFIAGVFPFVWAGFEFWKRIDVQQRCGVCQGSGLVYENASGKSLSVPRKCYACGGFLPWAGWRRFWLSNLDIGNGGVLQRPAADYEALSEAAKRRRAGG 243
The following BLAST results are available for this feature:
BLAST of NO27G01150.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20983.14.300e-7167.91hypothetical protein Naga_100487g1, partial [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO27G01150NO27G01150Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO27G01150.1NO27G01150.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO27G01150.1.cds1NO27G01150.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01150.1.cds2NO27G01150.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01150.1.cds3NO27G01150.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO27G01150.1 ID=NO27G01150.1|Name=NO27G01150.1|organism=Nannochloropsis oceanica|type=mRNA|length=766bp
ACAGCAGCCATGGTACCACAAGCCGCTCCACTAGCATTTAGAACCCGCCA
CGTCGCCCTTCTTCTTGTAGTCCTCGTCATCGCCTTGCTTGCTGCGACCG
CGTCGTCCTCGTCCGCGTCTTCGCCCCTTGGGTTTGTACCCTCTACACAG
CAGCTCCAGCAGACCTCCTCCTCGAGCTCCACTTCATGCTGCGGTGGTCG
GCACCCTGCTTCTCCCGCGCACCAGCACTTCCACGCAAGCCGTGCCGCAA
TCACAACGAAGCGACACGCGCTCCCACCTTTTGACAGCCCCCTCGATCCC
GCCACCTTGGAGAGCATGGCTGCCACTGCTGCTGCGTCCTCCGCTGCCGC
TAGTGCCGGCGGGGCTATTCACGAAGTCACTCCCGAGCAGCTTTGGGTTG
GTTTTATCGCTGGCGTCTTCCCTTTCATCTGGGCAGGGTACGAATTCTGG
AAACGCATCGATACACAGCAACGGTGTGGGGTCTGTCAAGGCTCGGGTCT
AGTGTACGAAAGCGCGACGGGTAAAAGTCTCACTACAGCCCGAAAGTGCT
ACGCGTGTGGTGGTTTTTTGCCGTGGGCAGGTTGGAAGCGGTTCTGGCTG
AGCAATCTGGACATTGGAAATGGAGGTGTACTGCAGCGACCCGCCCCGGA
TTATGAAGCCTTGAGTGAGGCGGCGAAGAGGAGGAGGGCGGGAGGGAAGG
AGGGGAAAGACTAGACCGAAAAGAAGAGCGAACGAAAGTGTGTACCACAG
ATAGAACCACGTAGGG
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protein sequence of NO27G01150.1

>NO27G01150.1-protein ID=NO27G01150.1-protein|Name=NO27G01150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=235bp
MVPQAAPLAFRTRHVALLLVVLVIALLAATASSSSASSPLGFVPSTQQLQ
QTSSSSSTSCCGGRHPASPAHQHFHASRAAITTKRHALPPFDSPLDPATL
ESMAATAAASSAAASAGGAIHEVTPEQLWVGFIAGVFPFIWAGYEFWKRI
DTQQRCGVCQGSGLVYESATGKSLTTARKCYACGGFLPWAGWKRFWLSNL
DIGNGGVLQRPAPDYEALSEAAKRRRAGGKEGKD*
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mRNA from alignment at chr27:369371..370438-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO27G01150.1 ID=NO27G01150.1|Name=NO27G01150.1|organism=Nannochloropsis oceanica|type=mRNA|length=1068bp|location=Sequence derived from alignment at chr27:369371..370438- (Nannochloropsis oceanica)
ACAGCAGCCATGGTACCACAAGCCGCTCCACTAGCATTTAGAACCCGCCA
CGTCGCCCTTCTTCTTGTAGTCCTCGTCATCGCCTTGCTTGCTGCGACCG
CGTCGTCCTCGTCCGCGTCTTCGCCCCTTGGGTTTGTACCCTCTACACAG
CAGCTCCAGCAGACCTCCTCCTCGAGCTCCACTTCATGCTGCGGTGGTCG
GCACCCTGCTTCTCCCGCGCACCAGCACTTCCACGCAAGCCGTGCCGCAA
TCACAACGAAGCGACACGCGCTCCCACCTTTTGACAGCCCCCTCGATCCC
GCCACCTTGGAGAGCATGGCTGCCACTGCTGCTGCGTCCTCCGCTGCCGC
TAGTGCCGGCGGGGCTATTCACGAAGTCACTCCCGAGCAGCTTTGGGTAA
GTTTTCGTGTGTATATGCGTGCGCTTGGTGGGACGACTAATTGTCCTCTC
AAAGTATTCATGTCGACCCCTCTCCTCCCCCCTCTCTCCCAGGTTGGTTT
TATCGCTGGCGTCTTCCCTTTCATCTGGGCAGGGTACGAATTCTGGAAAC
GCATCGATACACAGCAACGGTGTGGGGTCTGTCAAGGCTCGGGTCTAGTG
TACGAAAGCGCGACGGGTAAAAGTCTCACTACAGCCCGAAAGTGCTACGC
GTGTGGTGGTTTTTTGCCGGTGAGGAAGGAGGGAGAGAGGGAGGGAGGGA
GGCGTATCTTTTGTAAGACACCACAAGTGATATAATTATCATTGATGTCG
TCGTCATCATCATCATCATCATCATCATCGTCATCATCTTCACCACAGTA
ACTGTTCCATTTTGCCCACACCCTTTCTCACATTTCCCCTAATCCCTCCC
TCCCTCGCTCTTTCCCGGCCTCCAGTGGGCAGGTTGGAAGCGGTTCTGGC
TGAGCAATCTGGACATTGGAAATGGAGGTGTACTGCAGCGACCCGCCCCG
GATTATGAAGCCTTGAGTGAGGCGGCGAAGAGGAGGAGGGCGGGAGGGAA
GGAGGGGAAAGACTAGACCGAAAAGAAGAGCGAACGAAAGTGTGTACCAC
AGATAGAACCACGTAGGG
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Coding sequence (CDS) from alignment at chr27:369371..370438-

>NO27G01150.1 ID=NO27G01150.1|Name=NO27G01150.1|organism=Nannochloropsis oceanica|type=CDS|length=705bp|location=Sequence derived from alignment at chr27:369371..370438- (Nannochloropsis oceanica)
ATGGTACCACAAGCCGCTCCACTAGCATTTAGAACCCGCCACGTCGCCCT
TCTTCTTGTAGTCCTCGTCATCGCCTTGCTTGCTGCGACCGCGTCGTCCT
CGTCCGCGTCTTCGCCCCTTGGGTTTGTACCCTCTACACAGCAGCTCCAG
CAGACCTCCTCCTCGAGCTCCACTTCATGCTGCGGTGGTCGGCACCCTGC
TTCTCCCGCGCACCAGCACTTCCACGCAAGCCGTGCCGCAATCACAACGA
AGCGACACGCGCTCCCACCTTTTGACAGCCCCCTCGATCCCGCCACCTTG
GAGAGCATGGCTGCCACTGCTGCTGCGTCCTCCGCTGCCGCTAGTGCCGG
CGGGGCTATTCACGAAGTCACTCCCGAGCAGCTTTGGGTTGGTTTTATCG
CTGGCGTCTTCCCTTTCATCTGGGCAGGGTACGAATTCTGGAAACGCATC
GATACACAGCAACGGTGTGGGGTCTGTCAAGGCTCGGGTCTAGTGTACGA
AAGCGCGACGGGTAAAAGTCTCACTACAGCCCGAAAGTGCTACGCGTGTG
GTGGTTTTTTGCCGTGGGCAGGTTGGAAGCGGTTCTGGCTGAGCAATCTG
GACATTGGAAATGGAGGTGTACTGCAGCGACCCGCCCCGGATTATGAAGC
CTTGAGTGAGGCGGCGAAGAGGAGGAGGGCGGGAGGGAAGGAGGGGAAAG
ACTAG
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Synonyms
Publications