NO27G01060.3, NO27G01060.3 (mRNA) Nannochloropsis oceanica

Overview
NameNO27G01060.3
Unique NameNO27G01060.3
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1740
Alignment locationchr27:343985..345855 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:343985..345855 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO27G01060.3 vs.
Match: EWM20990.1 (microcystin synthetase-associated thioesterase [Nannochloropsis gaditana])

HSP 1 Score: 261.5 bits (667), Expect = 2.800e-66
Identity = 126/179 (70.39%), Postives = 146/179 (81.56%), Query Frame = 0 
Query:    1 MGCGPSCCVPPQVIKALEAH-TAEAKAAKSAPMATAQPVLQARRRAAIMTEAVAQKWLLSNGKCVGGAKARMICLGWAGSNSGVFKNWDLKTVEVVKVELPARNARFNDKPIHDVNLLAKKIAQACSVLGYYASQIPLVIFGHSFGAMVGLHVARVMKQEYNYVPKMCVFGGCRPLHRY 179
            MGCG SCC+PP V KA+E H  AE K A  AP   +Q   +A  R  +M+EA+AQKWLLSNGK V GAK R+ICLGWAG+NS VFK WDLK  EVVKVELP+RNARFNDKPIHDVN+LAKKI+QAC V+GY  S  PLVIFGHSFGAM+GLH+AR+MK+EY+Y PKMC+FGGCRPLHR+
Sbjct:   36 MGCGSSCCIPPYVSKAIEVHAAAEPKKASDAP-TDSQSTFKAGPRRPVMSEAMAQKWLLSNGKPVAGAKVRIICLGWAGANSNVFKTWDLKCGEVVKVELPSRNARFNDKPIHDVNILAKKISQACFVMGYLESTTPLVIFGHSFGAMIGLHLARIMKKEYDYTPKMCIFGGCRPLHRW 213
The following BLAST results are available for this feature:
BLAST of NO27G01060.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20990.12.800e-6670.39microcystin synthetase-associated thioesterase [Na... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO27G01060NO27G01060Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO27G01060.3NO27G01060.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO27G01060.3.cds1NO27G01060.3.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01060.3.cds2NO27G01060.3.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO27G01060.3 ID=NO27G01060.3|Name=NO27G01060.3|organism=Nannochloropsis oceanica|type=mRNA|length=1740bp
TTCTGGTCAAGAAGCCGTTGCAAGCTCATCCGTCGCCTGAGCAACACACT
CGATATCTCTTCTCACATGCGCATGATCCCCGTCTTCAAGCGAATATCCA
ACTCAAGCAGCGCATTTCTTAACGACAAATAGCTCTCTGTGATCGACATA
CGAAGAGCAGGGCATCGGTCCTCCGAGCAAGAACACCAAAGCCGCCTCAC
AAATCGAGGACGACCTACCAACATCGAAAAAATGGGTTGTGGACCATCTT
GCTGTGTGCCTCCACAAGTCATTAAGGCGCTCGAAGCCCATACCGCCGAA
GCCAAAGCTGCCAAATCTGCGCCAATGGCGACAGCACAGCCTGTTTTGCA
AGCTCGGCGTCGTGCAGCCATCATGACCGAAGCCGTCGCGCAAAAGTGGC
TCTTGTCGAACGGAAAGTGTGTGGGTGGAGCTAAGGCTCGAATGATTTGT
CTAGGGTGGGCGGGGAGCAATTCGGGGGTGTTTAAGAATTGGGATTTGAA
GACGGTGGAGGTGGTCAAGGTGGAGCTGCCGGCACGCAACGCCCGCTTCA
ATGACAAACCGATCCATGACGTCAATCTCCTTGCGAAGAAAATTGCACAG
GCTTGCTCTGTCCTCGGGTATTACGCGTCTCAAATCCCACTAGTAATTTT
TGGGCATTCATTTGGGGCTATGGTTGGTCTTCATGTGGCTCGGGTGATGA
AGCAGGAGTACAACTATGTGCCGAAGATGTGCGTGTTTGGGGGATGTCGG
CCGTTGCATCGGTACGTGGGTGGTATAAAGGGTAGAGGGGAGTATATGGC
AAGAAAAGATGAGGCATGGGACGAGAACAAAATAAATGTGGACCAGGCAA
CGCTCCAAACCATCGTCCATTTTACTCTTTACACTTCAACCTTTCAAAAA
CCTAGGTGGGGCTTCCCCATGTCCTACTACAAGGAGGACGATGACGAGAT
GATCCAGAGCATGGTCGACTGTGGAGGGATGACCAAGGAGATGGCTAAGG
ATAAGGTATCACGGAGGGAAGGATAGAAAAATCGAGCATGAAAATCATGC
AAAAAAGCTGCTTCAGGGGTGGAGGAGAACAAAAGACACATTCCCTGAAA
ACGAAAATAATCGATAATTACCACACTCTCCCCCATTGACTATCACAAAT
ACAGCTCCTGATCTCCTCAGTGCTGGCTGGAATTAAGATGGACCACCTCT
GTATGGACAGATACGTCTTGAACGAGTCCGCTGAGAAGGTTCACACGCCC
CTGTGGGTGATCGGTGGGGTAGATGACCCCCGTTCTCCTCCCGAGCAACT
GCCGGAGTGGGAAAGGTATACCACGTCGGGGATTCAGATAAAGACGTTTC
CGGGGGGGCATTTCTTTTTGAAGGAGAAGGAGGCTGACTTGCTGGCGTGG
CTGAGCAAGGTGGTGGAGGAGTGAAGGAACCGTGATGAGAAGATGGACCG
AGGTGAAGAGAGGAGTGAGGGAAATGGGGCACCATTACATTTCGTAATGA
TATTTCAGTATGTCCTCTTAGAATTCTGCTGCAATCGAGTTAAAACCGTA
GTATATTGCGTAAACTGGGATTGTGTGGAGTGTTAATTTTGTCTTATTTG
GAAGAAGAGTCCGTCGGGGTTTCAGTATTGGCGTAGGAATGTTGATGTTT
TGCTGAAAAGCGAAGAGATTAGCGAGCGAAGGCAGTGAAAAGGAAACAAT
TTATTCTTAAAGTAATGAAAAATGAGCAATTCGTTGACAA
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protein sequence of NO27G01060.3

>NO27G01060.3-protein ID=NO27G01060.3-protein|Name=NO27G01060.3|organism=Nannochloropsis oceanica|type=polypeptide|length=265bp
MGCGPSCCVPPQVIKALEAHTAEAKAAKSAPMATAQPVLQARRRAAIMTE
AVAQKWLLSNGKCVGGAKARMICLGWAGSNSGVFKNWDLKTVEVVKVELP
ARNARFNDKPIHDVNLLAKKIAQACSVLGYYASQIPLVIFGHSFGAMVGL
HVARVMKQEYNYVPKMCVFGGCRPLHRYVGGIKGRGEYMARKDEAWDENK
INVDQATLQTIVHFTLYTSTFQKPRWGFPMSYYKEDDDEMIQSMVDCGGM
TKEMAKDKVSRREG*
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mRNA from alignment at chr27:343985..345855+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO27G01060.3 ID=NO27G01060.3|Name=NO27G01060.3|organism=Nannochloropsis oceanica|type=mRNA|length=1871bp|location=Sequence derived from alignment at chr27:343985..345855+ (Nannochloropsis oceanica)
TTCTGGTCAAGAAGCCGTTGCAAGCTCATCCGTCGCCTGAGCAACACACT
CGATATCTCTTCTCACATGCGCATGATCCCCGTCTTCAAGCGAATATCCA
ACTCAAGCAGCGCATTTCTTAACGACAAATAGCTCTCTGTGATCGACATA
CGAAGAGCAGGGCATCGGTCCTCCGAGCAAGAACACCAAAGCCGCCTCAC
AAATCGAGGACGACCTACCAACATCGAAAAAATGGGTAAGTGAACATACT
GTTTGATTATTTACTCTTCCCTCCCTACCTTCCCTCGGTAATCCTCGCAA
TAAAGATGCTCGCTTGCGCAATTGTCCCTACCCTCCCTTACTTCCTTCCT
CCCTCCCTCCCTCCAGGTTGTGGACCATCTTGCTGTGTGCCTCCACAAGT
CATTAAGGCGCTCGAAGCCCATACCGCCGAAGCCAAAGCTGCCAAATCTG
CGCCAATGGCGACAGCACAGCCTGTTTTGCAAGCTCGGCGTCGTGCAGCC
ATCATGACCGAAGCCGTCGCGCAAAAGTGGCTCTTGTCGAACGGAAAGTG
TGTGGGTGGAGCTAAGGCTCGAATGATTTGTCTAGGGTGGGCGGGGAGCA
ATTCGGGGGTGTTTAAGAATTGGGATTTGAAGACGGTGGAGGTGGTCAAG
GTGGAGCTGCCGGCACGCAACGCCCGCTTCAATGACAAACCGATCCATGA
CGTCAATCTCCTTGCGAAGAAAATTGCACAGGCTTGCTCTGTCCTCGGGT
ATTACGCGTCTCAAATCCCACTAGTAATTTTTGGGCATTCATTTGGGGCT
ATGGTTGGTCTTCATGTGGCTCGGGTGATGAAGCAGGAGTACAACTATGT
GCCGAAGATGTGCGTGTTTGGGGGATGTCGGCCGTTGCATCGGTACGTGG
GTGGTATAAAGGGTAGAGGGGAGTATATGGCAAGAAAAGATGAGGCATGG
GACGAGAACAAAATAAATGTGGACCAGGCAACGCTCCAAACCATCGTCCA
TTTTACTCTTTACACTTCAACCTTTCAAAAACCTAGGTGGGGCTTCCCCA
TGTCCTACTACAAGGAGGACGATGACGAGATGATCCAGAGCATGGTCGAC
TGTGGAGGGATGACCAAGGAGATGGCTAAGGATAAGGTATCACGGAGGGA
AGGATAGAAAAATCGAGCATGAAAATCATGCAAAAAAGCTGCTTCAGGGG
TGGAGGAGAACAAAAGACACATTCCCTGAAAACGAAAATAATCGATAATT
ACCACACTCTCCCCCATTGACTATCACAAATACAGCTCCTGATCTCCTCA
GTGCTGGCTGGAATTAAGATGGACCACCTCTGTATGGACAGATACGTCTT
GAACGAGTCCGCTGAGAAGGTTCACACGCCCCTGTGGGTGATCGGTGGGG
TAGATGACCCCCGTTCTCCTCCCGAGCAACTGCCGGAGTGGGAAAGGTAT
ACCACGTCGGGGATTCAGATAAAGACGTTTCCGGGGGGGCATTTCTTTTT
GAAGGAGAAGGAGGCTGACTTGCTGGCGTGGCTGAGCAAGGTGGTGGAGG
AGTGAAGGAACCGTGATGAGAAGATGGACCGAGGTGAAGAGAGGAGTGAG
GGAAATGGGGCACCATTACATTTCGTAATGATATTTCAGTATGTCCTCTT
AGAATTCTGCTGCAATCGAGTTAAAACCGTAGTATATTGCGTAAACTGGG
ATTGTGTGGAGTGTTAATTTTGTCTTATTTGGAAGAAGAGTCCGTCGGGG
TTTCAGTATTGGCGTAGGAATGTTGATGTTTTGCTGAAAAGCGAAGAGAT
TAGCGAGCGAAGGCAGTGAAAAGGAAACAATTTATTCTTAAAGTAATGAA
AAATGAGCAATTCGTTGACAA
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Coding sequence (CDS) from alignment at chr27:343985..345855+

>NO27G01060.3 ID=NO27G01060.3|Name=NO27G01060.3|organism=Nannochloropsis oceanica|type=CDS|length=795bp|location=Sequence derived from alignment at chr27:343985..345855+ (Nannochloropsis oceanica)
ATGGGTTGTGGACCATCTTGCTGTGTGCCTCCACAAGTCATTAAGGCGCT
CGAAGCCCATACCGCCGAAGCCAAAGCTGCCAAATCTGCGCCAATGGCGA
CAGCACAGCCTGTTTTGCAAGCTCGGCGTCGTGCAGCCATCATGACCGAA
GCCGTCGCGCAAAAGTGGCTCTTGTCGAACGGAAAGTGTGTGGGTGGAGC
TAAGGCTCGAATGATTTGTCTAGGGTGGGCGGGGAGCAATTCGGGGGTGT
TTAAGAATTGGGATTTGAAGACGGTGGAGGTGGTCAAGGTGGAGCTGCCG
GCACGCAACGCCCGCTTCAATGACAAACCGATCCATGACGTCAATCTCCT
TGCGAAGAAAATTGCACAGGCTTGCTCTGTCCTCGGGTATTACGCGTCTC
AAATCCCACTAGTAATTTTTGGGCATTCATTTGGGGCTATGGTTGGTCTT
CATGTGGCTCGGGTGATGAAGCAGGAGTACAACTATGTGCCGAAGATGTG
CGTGTTTGGGGGATGTCGGCCGTTGCATCGGTACGTGGGTGGTATAAAGG
GTAGAGGGGAGTATATGGCAAGAAAAGATGAGGCATGGGACGAGAACAAA
ATAAATGTGGACCAGGCAACGCTCCAAACCATCGTCCATTTTACTCTTTA
CACTTCAACCTTTCAAAAACCTAGGTGGGGCTTCCCCATGTCCTACTACA
AGGAGGACGATGACGAGATGATCCAGAGCATGGTCGACTGTGGAGGGATG
ACCAAGGAGATGGCTAAGGATAAGGTATCACGGAGGGAAGGATAG
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Synonyms
Publications