NO27G00740.1, NO27G00740.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO27G00740.1
Unique NameNO27G00740.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1404
Alignment locationchr27:264501..267138 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:264501..267138 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO27G00740.1 vs.
Match: EWM21026.1 (Protein kinase, catalytic domain protein [Nannochloropsis gaditana])

HSP 1 Score: 269.6 bits (688), Expect = 1.800e-68
Identity = 166/394 (42.13%), Postives = 225/394 (57.11%), Query Frame = 0 
Query:   78 ATAAAAATGGGMRSMGSMPSRSQELIEPEPLPPPRIADCVKRTLEVI----------------SQGRLHAVECLVSLAGTQAVYALIRTLRPAIYGKVKLGMTLHTRSEDGS-YHMSTEYPVAIKIVRKDKLG---GRSQEDPLKEISVMQYLASGPLPASPSSSSGGGGHPNVMGLVEVLQDAENIYIVLPFCDGGEVCQWFERSRYMLREEVARGFFLQIVGGLAYLHSRGVVHRDMSLENLLYDQKTKRCIIIDLGMCLHLPIPA-----------TSDVLVRKQGYCGKLTYMSHEIYKNKDFYAAAVDIWALGVILFIMLTGIPPVETPAEIDPRFRMLAEGRLFELMDLWRVDFLSAEARDLLFGLLQVEPRKRLTMEEIKMHPWVGG 441
            A++A  A  GG R   + P+    +++PEP P PRIA  V R  +V+                SQ  +  + CLVS A T   Y   RTLR  I+G V+ G+TL   +  G  Y +    PVAIK V K K+    GR +E+P+ E++ +Q + +G            GGH +V  L+E L+D E IY V PF  GGE+    E     L E  AR FF QI+ GLA++H R + HRDMSLEN+L D +    +IID+GMCL +P+P            T  VL+RKQG CGK+TYM   + ++KDF   AVD+WA GVILFI+L G+PP+E PA  DPR+RM+  G+L ELMD+W +  +S EA+ LL  LL+  P +R  MEE+  HPW+ G
Sbjct:    2 ASSAPGAGSGGTRRGDTRPA---VVVDPEPFPAPRIAPGVIRDCQVLEGPARPPARWRAFGGRSQESVRWLRCLVS-AETGRAYCFTRTLRECIFGVVRHGVTLEKDAGAGGVYRLCPSQPVAIKCVSKQKIEEGRGRLRENPIDELAALQMVGAG------------GGHQHVQRLLECLEDDEAIYAVSPFYQGGELFAVIEARGGGLPEARARTFFSQILSGLAFMHDRRLCHRDMSLENILVDGQDG--VIIDMGMCLRVPLPPALPPSHPDDPETPRVLLRKQGQCGKITYMDPVVLEDKDFDGFAVDMWACGVILFILLAGVPPLELPALTDPRYRMIQAGKLGELMDVWEMR-ISREAKHLLESLLKAVPEERAKMEEVIRHPWLTG 376
The following BLAST results are available for this feature:
BLAST of NO27G00740.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21026.11.800e-6842.13Protein kinase, catalytic domain protein [Nannochl... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO27G00740NO27G00740Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO27G00740.1NO27G00740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO27G00740.1.cds1NO27G00740.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00740.1.cds2NO27G00740.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00740.1.cds3NO27G00740.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00740.1.cds4NO27G00740.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00740.1.cds5NO27G00740.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO27G00740.1 ID=NO27G00740.1|Name=NO27G00740.1|organism=Nannochloropsis oceanica|type=mRNA|length=1404bp
ATGATGGAAATTGACGACGAGCAGCAGCCGCCTCCGGCTACCAAACAACA
AGAAGGCGGTCCAGACATCAGTCCCAGCATGGGCACCGGCATGAGCACTC
GCCGCCGATTCTCTCCACAACAGCAAGGAGGGCAAAGAGCAGTAGTATCA
TTAGATGGAGAAGTAAACGGAGGCGGCGAAAGCGGACCAGGCCCTCCACC
ACCACCACCAGCGGCAGCCGCAGCAGCAGCCGCAACAGCAGCAGCTGCAG
CAACAGGAGGAGGAATGAGATCAATGGGATCAATGCCCTCCCGCTCTCAA
GAATTGATAGAGCCCGAGCCCTTGCCCCCACCGCGGATAGCCGATTGCGT
CAAACGCACATTGGAGGTAATCTCGCAGGGGAGGCTACATGCAGTCGAGT
GCCTTGTCTCCTTAGCGGGGACACAAGCGGTCTACGCGTTGATACGAACG
CTGCGACCAGCTATATACGGCAAGGTTAAGCTAGGCATGACCCTCCATAC
CAGAAGCGAGGATGGCAGCTATCACATGTCGACCGAATATCCGGTCGCCA
TCAAAATCGTGCGCAAAGACAAATTGGGCGGCCGCAGCCAAGAGGATCCA
TTGAAGGAAATCAGCGTGATGCAATATCTAGCGTCGGGCCCCCTCCCTGC
CTCCCCCTCCTCATCAAGTGGAGGCGGGGGACACCCGAACGTGATGGGCT
TGGTGGAAGTGCTTCAAGACGCGGAGAACATCTACATTGTGTTGCCGTTT
TGCGACGGTGGCGAAGTATGCCAATGGTTCGAAAGGTCCCGTTACATGCT
ACGGGAAGAGGTGGCCCGAGGCTTCTTTCTTCAAATCGTCGGGGGTCTCG
CCTATCTCCACTCGAGAGGAGTCGTCCACCGCGACATGTCCTTGGAAAAC
CTCCTCTACGACCAGAAGACCAAACGTTGCATAATCATCGATCTTGGCAT
GTGCCTTCATCTCCCTATTCCCGCCACCAGCGACGTCCTTGTCAGGAAGC
AAGGGTACTGCGGAAAGCTCACCTACATGTCGCACGAGATCTACAAAAAC
AAAGATTTTTACGCGGCGGCCGTGGACATATGGGCCCTGGGCGTCATTCT
CTTCATTATGCTGACAGGCATACCACCCGTGGAGACACCGGCAGAGATCG
ACCCCCGCTTCCGCATGCTTGCCGAGGGTCGTTTGTTTGAGCTGATGGAC
CTCTGGCGAGTGGATTTTTTATCGGCGGAAGCCCGAGATTTACTGTTTGG
CTTGCTTCAAGTCGAGCCCCGGAAACGACTGACAATGGAGGAGATTAAGA
TGCATCCCTGGGTCGGGGGAGCGGTGTCTTCCGCTCTTTCAACTGAAGGG
AATGAGGGACCGAAGGAGGAAAGGCTTAGAGCTGTGGGAGATGCGAATGC
ATAG
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protein sequence of NO27G00740.1

>NO27G00740.1-protein ID=NO27G00740.1-protein|Name=NO27G00740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=468bp
MMEIDDEQQPPPATKQQEGGPDISPSMGTGMSTRRRFSPQQQGGQRAVVS
LDGEVNGGGESGPGPPPPPPAAAAAAAATAAAAATGGGMRSMGSMPSRSQ
ELIEPEPLPPPRIADCVKRTLEVISQGRLHAVECLVSLAGTQAVYALIRT
LRPAIYGKVKLGMTLHTRSEDGSYHMSTEYPVAIKIVRKDKLGGRSQEDP
LKEISVMQYLASGPLPASPSSSSGGGGHPNVMGLVEVLQDAENIYIVLPF
CDGGEVCQWFERSRYMLREEVARGFFLQIVGGLAYLHSRGVVHRDMSLEN
LLYDQKTKRCIIIDLGMCLHLPIPATSDVLVRKQGYCGKLTYMSHEIYKN
KDFYAAAVDIWALGVILFIMLTGIPPVETPAEIDPRFRMLAEGRLFELMD
LWRVDFLSAEARDLLFGLLQVEPRKRLTMEEIKMHPWVGGAVSSALSTEG
NEGPKEERLRAVGDANA*
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mRNA from alignment at chr27:264501..267138-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO27G00740.1 ID=NO27G00740.1|Name=NO27G00740.1|organism=Nannochloropsis oceanica|type=mRNA|length=2638bp|location=Sequence derived from alignment at chr27:264501..267138- (Nannochloropsis oceanica)
ATGATGGAAATTGACGACGAGCAGCAGCCGCCTCCGGCTACCAAACAACA
AGAAGGCGGTCCAGACATCAGTCCCAGCATGGGCACCGGCATGAGCACTC
GCCGCCGATTCTCTCCACAACAGCAAGGAGGGCAAAGAGCAGTAGTATCA
TTAGATGGAGAAGTAAACGGAGGCGGCGAAAGCGGACCAGGCCCTCCACC
ACCACCACCAGCGGCAGCCGCAGCAGCAGCCGCAACAGCAGCAGCTGCAG
CAACAGGAGGAGGAATGAGATCAATGGGATCAATGCCCTCCCGCTCTCAA
GAATTGATAGAGCCCGAGCCCTTGCCCCCACCGCGGATAGCCGATTGCGT
CAAACGCACATTGGAGGTAATCTCGCAGGGGAGGCTACATGCAGTCGAGT
GCCTTGTCTCCTTAGCGGGGACACAAGCGGTCTACGCGTTGATACGAACG
CTGCGACCAGCTATATACGGCAAGGTGAGTTTTCAGTTTTCATGTTCCGC
TGAGTGTGGTGTTGGGGTTTCCTATATCCTTTCTTTTCGCCCTTTTCTTT
CCTTATCGAAAACGAAAACAATGATTCAGAGCCTGCACCCGGTCAAACAT
TTTCTCGACGGCAAGGCGAGTCGATGGAATAGAGATGCAGACAAGTTAGT
AGCTGTTGTCTCCCCTTTGACATGTCTTTGGAAGGGGAAGGAGTTCATCC
CCGCTCTTTTCGCGTCGTTCCAAACCTGCCTGCCGTTCCCCTCCCCATTT
CTCATTCGCCCCCTCCCTCCCTCCCGCCCTCCCGCCCTCCCACGCACCGT
TATTTCCCCCAGGTTAAGCTAGGCATGACCCTCCATACCAGAAGCGAGGA
TGGCAGCTATCACATGTCGACCGAATATCCGGTCGCCATCAAAATCGTGC
GCAAAGACAAATTGGGCGGCCGCAGCCAAGAGGATCCATTGAAGGAAATC
AGCGTGATGCAATATCTAGCGTCGGGCCCCCTCCCTGCCTCCCCCTCCTC
ATCAAGTGGAGGCGGGGGACACCCGAACGTGATGGGCTTGGTGGAAGTGC
TTCAAGACGCGGAGAACATCTACATTGTGTTGCCGTTTTGCGACGGTGGC
GAAGTATGCCAATGGTTCGAAAGGTCCCGTTACATGCTACGGGAAGAGGT
ACGCCCTCCTACCCTCCCTCCCTCTCTCCCTCCCTCCCTCCTTCTATATG
TCCATATGTACGTCTCGACTAGTTTGTGCATGCTCTTCTGCTGGAGGTGC
TTGAGACGATATCGCATGTGGTGTGGGTGTGGGTGTGGGTGTGGGTGTGG
TTGGTGGTGGGGAGTAGTTCTGTGAGGGGGTTAAGAGGCCCCGCCATACG
CTGTTAGAAGAGGCTGGGAGGGAGGGGGTGTAGGGAGGAGGGAAGATCAA
ATCGCACTGAGAGATCAAGACCTTGACTATGCCTCTGCAAATCGAGTTTG
ATCTCCAGATGAATGGATAACAATTCCTCCTTCCCCCCCTCTCTCCCTCC
CTCGCAGGTGGCCCGAGGCTTCTTTCTTCAAATCGTCGGGGGTCTCGCCT
ATCTCCACTCGAGAGGAGTCGTCCACCGCGACATGTCCTTGGAAAACCTC
CTCTACGACCAGAAGACCAAACGTTGCATAATCATCGATCTTGGCATGTG
CCTTCATCTCCCTATTCCCGCCACCAGCGACGTCCTTGTCAGGTACGCCT
TCCCTTTCCCTCCCTCCCTTCCATCCTTCCTGTCTCTATGACCAGTGCAC
AAAATTCGGCATGGCGATAGACCACGGTATCTAACGCCCCATTCTCCCCG
TTGATTTATGCCCAGCATTTTGGTCCTCCCTCCCCTCCTTCCCTCTCCCT
TCCTCCCTCATTTTCTCCTCGCGTAAAGGGGCACCAAACTTCGATAATGA
TCAATCTTATCGTCTCTCCTTCCCTCTTTTCCCCCTACTGGCTGTCTTTT
CCATCCATTTACTCGATTCATTCACGTGCTTCTTGACTATCTTTTTTCAT
TCGCTTTAAATTGTTTCCTCGAACGTTTAGGAAGCAAGGGTACTGCGGAA
AGCTCACCTACATGTCGCACGAGATCTACAAAAACAAAGATTTTTACGCG
GCGGCCGTGGACATATGGGCCCTGGGCGTCATTCTCTTCATTATGCTGAC
AGGTGAGAAAGGGAGAGAGGGAGGGAAGGAGGGAGAGCCAGCTGAGGGGT
TCTTCCTGTTTTAGTGGGAGACGTCTTCATTTTATATTTTCCTTTCTCTC
GTGTAATTGTTTACCCATCGTTCACTCTCATGGTCTAATCTAATCAGGGT
CCATCATGGTCTAATCTAATGTTGGTATAATCTAATCATCTTCACACACA
GGCATACCACCCGTGGAGACACCGGCAGAGATCGACCCCCGCTTCCGCAT
GCTTGCCGAGGGTCGTTTGTTTGAGCTGATGGACCTCTGGCGAGTGGATT
TTTTATCGGCGGAAGCCCGAGATTTACTGTTTGGCTTGCTTCAAGTCGAG
CCCCGGAAACGACTGACAATGGAGGAGATTAAGATGCATCCCTGGGTCGG
GGGAGCGGTGTCTTCCGCTCTTTCAACTGAAGGGAATGAGGGACCGAAGG
AGGAAAGGCTTAGAGCTGTGGGAGATGCGAATGCATAG
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Coding sequence (CDS) from alignment at chr27:264501..267138-

>NO27G00740.1 ID=NO27G00740.1|Name=NO27G00740.1|organism=Nannochloropsis oceanica|type=CDS|length=1404bp|location=Sequence derived from alignment at chr27:264501..267138- (Nannochloropsis oceanica)
ATGATGGAAATTGACGACGAGCAGCAGCCGCCTCCGGCTACCAAACAACA
AGAAGGCGGTCCAGACATCAGTCCCAGCATGGGCACCGGCATGAGCACTC
GCCGCCGATTCTCTCCACAACAGCAAGGAGGGCAAAGAGCAGTAGTATCA
TTAGATGGAGAAGTAAACGGAGGCGGCGAAAGCGGACCAGGCCCTCCACC
ACCACCACCAGCGGCAGCCGCAGCAGCAGCCGCAACAGCAGCAGCTGCAG
CAACAGGAGGAGGAATGAGATCAATGGGATCAATGCCCTCCCGCTCTCAA
GAATTGATAGAGCCCGAGCCCTTGCCCCCACCGCGGATAGCCGATTGCGT
CAAACGCACATTGGAGGTAATCTCGCAGGGGAGGCTACATGCAGTCGAGT
GCCTTGTCTCCTTAGCGGGGACACAAGCGGTCTACGCGTTGATACGAACG
CTGCGACCAGCTATATACGGCAAGGTTAAGCTAGGCATGACCCTCCATAC
CAGAAGCGAGGATGGCAGCTATCACATGTCGACCGAATATCCGGTCGCCA
TCAAAATCGTGCGCAAAGACAAATTGGGCGGCCGCAGCCAAGAGGATCCA
TTGAAGGAAATCAGCGTGATGCAATATCTAGCGTCGGGCCCCCTCCCTGC
CTCCCCCTCCTCATCAAGTGGAGGCGGGGGACACCCGAACGTGATGGGCT
TGGTGGAAGTGCTTCAAGACGCGGAGAACATCTACATTGTGTTGCCGTTT
TGCGACGGTGGCGAAGTATGCCAATGGTTCGAAAGGTCCCGTTACATGCT
ACGGGAAGAGGTGGCCCGAGGCTTCTTTCTTCAAATCGTCGGGGGTCTCG
CCTATCTCCACTCGAGAGGAGTCGTCCACCGCGACATGTCCTTGGAAAAC
CTCCTCTACGACCAGAAGACCAAACGTTGCATAATCATCGATCTTGGCAT
GTGCCTTCATCTCCCTATTCCCGCCACCAGCGACGTCCTTGTCAGGAAGC
AAGGGTACTGCGGAAAGCTCACCTACATGTCGCACGAGATCTACAAAAAC
AAAGATTTTTACGCGGCGGCCGTGGACATATGGGCCCTGGGCGTCATTCT
CTTCATTATGCTGACAGGCATACCACCCGTGGAGACACCGGCAGAGATCG
ACCCCCGCTTCCGCATGCTTGCCGAGGGTCGTTTGTTTGAGCTGATGGAC
CTCTGGCGAGTGGATTTTTTATCGGCGGAAGCCCGAGATTTACTGTTTGG
CTTGCTTCAAGTCGAGCCCCGGAAACGACTGACAATGGAGGAGATTAAGA
TGCATCCCTGGGTCGGGGGAGCGGTGTCTTCCGCTCTTTCAACTGAAGGG
AATGAGGGACCGAAGGAGGAAAGGCTTAGAGCTGTGGGAGATGCGAATGC
ATAG
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Synonyms
Publications