NO27G00420.1, NO27G00420.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO27G00420.1
Unique Name	NO27G00420.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2284
Alignment location	chr27:156691..159251 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr27	genome	chr27:156691..159251 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO27G00420.1 vs.
Match: XP_010626105.1 (PREDICTED: WD repeat-containing protein WRAP73 isoform X1 [Fukomys damarensis])

HSP 1 Score: 130.2 bits (326), Expect = 2.500e-26
Identity = 138/540 (25.56%), Postives = 213/540 (39.44%), Query Frame = 0

Query:   96 QLYPHSKFLVAWSPDGRYVASISKKRLTVRDPTTMLIECYRSLFSSFSSSSSSSLAARGLQQQQQMHESDWLEWGADSDLIVCARWAREGGREGGREEGVVEAFRVSDSTWSCRITAGAAGFTYACLSPSFDPYISSSNTKNNSSEKEGGRAGGREGQYLLTVSDLWLSLSLWSLEDEEEGQEEVFSVALPKVNVKP-AFSPDGSLLLVARRREGRDEVGLYGRRRRGGSEGGRGREGGRAGGGWVCLRSFLPETADLVALEW--------------------------------------GVKSVALSGGGGREGGREWLAVGGWDGRVRVWSTLTWGLVLEGKCGKKEGIRDGGREGGRGDDGPSSQQRPAGAEGAATANTNTNTSSNTTTNNNNNNSSSNSGSSSKPRTRSFVAYTQQQSPYDDAFHPSLPPSLPFLKPDLTKAFPKMGIGLMAWSTEGGRGEGWEGGRFLLTRNDSMPRVLWVWDLEVPGLAAVLTFAAPVRSAQWSPSSPPSSPSTPPSLCIVTGGPRFYVWSPA 597
            +++  S  L  +SPDG+Y+AS  + RL VRD +T+ I                      LQ    + +   +EW ADS  I+CA + R          G+V+ + +    W C+I  G+AG   +C SP                          +G+++L  ++  L +++WSL       + V  +  PK   +   F+ DG  + +A RR+ +D V ++                      W  LR F  +T DL  LEW                                      G+KSVA S         ++LAVG +DG+VR+ + +TW ++ E                            PA      T        +      +     S +G+  +P T +       +S Y+ A   S+P +L  LKP   +A P+MG+G+MA+S +           FL TRND++P  +WVWD++   L  VL   +PVRS QW P          P L I TGG + Y+WSPA
Sbjct:    5 EVFKLSSLLCKFSPDGKYLASCVQYRLVVRDASTLQI----------------------LQLYTCLDQVQHMEWSADSLFILCAMYKR----------GLVQVWSLEQPEWHCKIDEGSAGLVASCWSP--------------------------DGRHILNTTEFHLRITVWSL-----CTKSVSYIKYPKACPQGITFTRDGRYMALAERRDCKDYVSIF------------------VCSDWQLLRHFDTDTQDLAGLEWAPNSCVLAAWDACLEYKMLLYSLDGRLLSVYCAYEWSLGIKSVAWSPSS------QFLAVGSYDGKVRLLNHVTWKMITEFG-------------------------HPAAIHSPKTVVYKETEKTPLLALGHLPFPPSRAGT--RPLTTA-------ESRYEVA---SVPITLQTLKPATDRANPRMGVGMMAFSADS---------YFLATRNDNVPNAVWVWDIQKLRLFVVLEQLSPVRSFQWDPQQ--------PRLAICTGGGKVYLWSPA 403

The following BLAST results are available for this feature:

BLAST of NO27G00420.1 vs.

BLAST of NO27G00420.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
XP_010626105.1	2.500e-26	25.56	PREDICTED: WD repeat-containing protein WRAP73 iso...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO27G00420	NO27G00420	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO27G00420.1	NO27G00420.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO27G00420.1.cds1	NO27G00420.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00420.1.cds2	NO27G00420.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00420.1.cds3	NO27G00420.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr27:156691..159251-
coding sequence from alignment at chr27:156691..159251-

mRNA sequence

>NO27G00420.1 ID=NO27G00420.1|Name=NO27G00420.1|organism=Nannochloropsis oceanica|type=mRNA|length=2284bp
ATGGGGCGCGATGCAGGCACGAGTAACAGCTTCAGCAGCAGCACCACCAG
CACCAGTACCAGTACCGGTGCCAGCAGCGGAAAAAATGATGCCGCAGCAG
GGCGTCTCAACGACTTCTTATCGTCGACCCGAATCAAGAATCTCCTTTCC
TCCCATGGACATGCCACCCTTGCCGCCGCCGCCTCCAGCAGCACTATCAC
TAGTAGCACCACCAATACTCCGCAATACTCCTCCTCCCCCTCCGCTCCCA
CCCAGGTACAATCAGAACAAAAAGAAGAAATGGGGCAGCTGTACCCACAC
AGCAAGTTCCTGGTGGCTTGGTCTCCGGACGGAAGATACGTCGCTAGCAT
CAGCAAGAAACGGTTGACCGTTAGGGATCCGACCACCATGCTCATTGAAT
GCTACCGTTCGTTGTTCTCTTCCTTCTCCTCCTCCTCCTCTTCTTCTTTG
GCAGCAAGAGGGCTACAGCAGCAGCAGCAGATGCACGAATCAGATTGGTT
AGAATGGGGGGCGGACTCCGATCTAATCGTGTGTGCCCGATGGGCGAGGG
AAGGAGGGAGGGAAGGCGGGCGGGAGGAAGGGGTGGTGGAGGCGTTCCGG
GTGAGTGATTCGACCTGGTCCTGCCGGATTACTGCAGGCGCTGCTGGGTT
CACCTATGCCTGTCTCAGCCCCTCTTTTGATCCCTACATTTCGAGCAGCA
ACACCAAAAACAACAGCAGTGAGAAGGAGGGAGGGAGGGCAGGAGGGAGG
GAAGGGCAGTACCTTTTGACTGTGAGTGACCTGTGGCTATCTCTCTCCTT
GTGGTCGCTTGAAGACGAGGAAGAGGGGCAGGAAGAGGTCTTCTCAGTGG
CCCTCCCAAAAGTGAACGTCAAGCCCGCCTTCTCCCCCGACGGATCCCTG
CTGCTCGTGGCGCGACGGAGGGAGGGGAGGGACGAAGTGGGGCTGTACGG
CAGACGGAGACGAGGAGGGAGCGAGGGAGGACGAGGGAGGGAAGGAGGGC
GGGCGGGAGGAGGGTGGGTGTGTCTGCGTTCATTCTTGCCCGAGACGGCG
GATTTGGTGGCATTAGAATGGGGTGTGAAGAGCGTGGCGCTCTCTGGAGG
GGGAGGGAGGGAGGGAGGGAGGGAGTGGCTGGCTGTGGGGGGATGGGATG
GGCGGGTGAGGGTGTGGTCGACGCTGACGTGGGGCCTGGTTTTGGAGGGG
AAGTGCGGCAAGAAGGAGGGGATTAGGGACGGAGGGAGGGAGGGAGGGCG
AGGTGACGATGGGCCATCCTCTCAGCAGCGGCCGGCGGGAGCAGAGGGAG
CAGCAACTGCTAACACCAACACCAACACCAGCAGCAACACCACCACCAAC
AACAACAATAACAACAGCAGCAGCAACAGCGGCAGCAGCAGCAAACCACG
GACGAGGTCCTTTGTGGCCTACACCCAACAGCAGTCACCCTATGACGACG
CCTTCCATCCCTCCCTCCCTCCCTCCCTCCCCTTCCTCAAACCCGACCTG
ACAAAGGCCTTCCCCAAAATGGGTATCGGGCTCATGGCCTGGAGTACTGA
GGGAGGGCGAGGGGAAGGGTGGGAGGGAGGACGCTTTCTCCTCACGCGAA
ACGACAGCATGCCGCGGGTGTTGTGGGTGTGGGATTTGGAAGTGCCAGGG
CTGGCTGCTGTCCTCACCTTTGCAGCCCCTGTCCGAAGCGCGCAGTGGAG
CCCTTCCTCCCCCCCTTCCTCGCCCTCCACCCCTCCCTCCTTGTGCATCG
TGACGGGCGGGCCGAGGTTCTATGTGTGGTCGCCGGCAGTGAGGGAGGGA
GGGGGGGAGGGGGGGTTACCTGATCCTCCGGCATGGTATGACCTTCCTGT
GGGGGATGGGGGTCATTTCGATGTAATGAAGGTGAGGTGGGCGCCAAGGG
AGGGAGGAAGGGAGGGAGGGGTGGAAGGAAAGGTGGGAGCAGTCGGGAGG
CGGATTGAGACGATGAGGTTGGAGGGGGGAGGGGAGGAGGGGGCGGAAGG
GGGGGAGGTGGAGGAGGAGGATGAGGTGTTTTTGATTGCCTTGATGAGCT
CTGAATATTGGTGTGTGTGTGCATTGAATCAATGAGGGAGGGAGGAAGGG
AATGAGGGATAGAGAGAGGGAGGGAGGAATATAAAAGAAGAGGGGGCAAA
GACACCGTGCAGGTCAGTAAAATGGTGGATACGGAAGAGGGGGGGGCGGT
TGGAAACTGTTAAAATTCAAACGAAGAAACGGGAAGGACACCGTTGAGAC
GAAGGGGGCATCAAATAGAAAGAGAAGCTTTTCA

protein sequence of NO27G00420.1

>NO27G00420.1-protein ID=NO27G00420.1-protein|Name=NO27G00420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=695bp
MGRDAGTSNSFSSSTTSTSTSTGASSGKNDAAAGRLNDFLSSTRIKNLLS
SHGHATLAAAASSSTITSSTTNTPQYSSSPSAPTQVQSEQKEEMGQLYPH
SKFLVAWSPDGRYVASISKKRLTVRDPTTMLIECYRSLFSSFSSSSSSSL
AARGLQQQQQMHESDWLEWGADSDLIVCARWAREGGREGGREEGVVEAFR
VSDSTWSCRITAGAAGFTYACLSPSFDPYISSSNTKNNSSEKEGGRAGGR
EGQYLLTVSDLWLSLSLWSLEDEEEGQEEVFSVALPKVNVKPAFSPDGSL
LLVARRREGRDEVGLYGRRRRGGSEGGRGREGGRAGGGWVCLRSFLPETA
DLVALEWGVKSVALSGGGGREGGREWLAVGGWDGRVRVWSTLTWGLVLEG
KCGKKEGIRDGGREGGRGDDGPSSQQRPAGAEGAATANTNTNTSSNTTTN
NNNNNSSSNSGSSSKPRTRSFVAYTQQQSPYDDAFHPSLPPSLPFLKPDL
TKAFPKMGIGLMAWSTEGGRGEGWEGGRFLLTRNDSMPRVLWVWDLEVPG
LAAVLTFAAPVRSAQWSPSSPPSSPSTPPSLCIVTGGPRFYVWSPAVREG
GGEGGLPDPPAWYDLPVGDGGHFDVMKVRWAPREGGREGGVEGKVGAVGR
RIETMRLEGGGEEGAEGGEVEEEDEVFLIALMSSEYWCVCALNQ*

mRNA from alignment at chr27:156691..159251-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO27G00420.1 ID=NO27G00420.1|Name=NO27G00420.1|organism=Nannochloropsis oceanica|type=mRNA|length=2561bp|location=Sequence derived from alignment at chr27:156691..159251- (Nannochloropsis oceanica)
ATGGGGCGCGATGCAGGCACGAGTAACAGCTTCAGCAGCAGCACCACCAG
CACCAGTACCAGTACCGGTGCCAGCAGCGGAAAAAATGATGCCGCAGCAG
GGCGTCTCAACGACTTCTTATCGTCGACCCGGTACGTTCATGTACTGTCA
CGCTCCTCCCTTCCCTCCTTCCCCCTTCCACCCTCATTTTCCCGCCCACC
CACCTTTCCTTCACTTGTTCCCCTCCTCCCTCCTTCCTTCCCTACCTTTC
CCCCAGAATCAAGAATCTCCTTTCCTCCCATGGACATGCCACCCTTGCCG
CCGCCGCCTCCAGCAGCACTATCACTAGTAGCACCACCAATACTCCGCAA
TACTCCTCCTCCCCCTCCGCTCCCACCCAGGTACAATCAGAACAAAAAGA
AGAAATGGGGCAGCTGTACCCACACAGCAAGTTCCTGGTGGCTTGGTCTC
CGGACGGAAGATACGTCGCTAGCATCAGCAAGAAACGGTTGACCGTTAGG
GATCCGACCACCATGCTCATTGAATGCTACCGTTCGTTGTTCTCTTCCTT
CTCCTCCTCCTCCTCTTCTTCTTTGGCAGCAAGAGGGCTACAGCAGCAGC
AGCAGATGCACGAATCAGATTGGTTAGAATGGGGGGCGGACTCCGATCTA
ATCGTGTGTGCCCGATGGGCGAGGGAAGGAGGGAGGGAAGGCGGGCGGGA
GGAAGGGGTGGTGGAGGCGTTCCGGGTGAGTGATTCGACCTGGTCCTGCC
GGATTACTGCAGGCGCTGCTGGGTTCACCTATGCCTGTCTCAGCCCCTCT
TTTGATCCCTACATTTCGAGCAGCAACACCAAAAACAACAGCAGTGAGAA
GGAGGGAGGGAGGGCAGGAGGGAGGGAAGGGCAGTACCTTTTGACTGTGA
GTGACCTGTGGCTATCTCTCTCCTTGTGGTCGCTTGAAGACGAGGAAGAG
GGGCAGGAAGAGGTCTTCTCAGTGGCCCTCCCAAAAGTGAACGTCAAGCC
CGCCTTCTCCCCCGACGGATCCCTGCTGCTCGTGGCGCGACGGAGGGAGG
GGAGGGACGAAGTGGGGCTGTACGGCAGACGGAGACGAGGAGGGAGCGAG
GGAGGACGAGGGAGGGAAGGAGGGCGGGCGGGAGGAGGGTGGGTGTGTCT
GCGTTCATTCTTGCCCGAGACGGCGGATTTGGTGGCATTAGAATGGGGTG
CGGGAGGGAGGTATTTCCTAATTCGGGATACGCCCTTGGTCGGGGATGGT
CTCTATGTCTACTCGCCGGATGGGGGAAAGCTGTTGTGGAAGCTCGAAGA
GGGGAAGGAGGGCTCGATAGCAGGAGGAGGGGGAGGAGGGGGGGATTAGG
TGTGAAGAGCGTGGCGCTCTCTGGAGGGGGAGGGAGGGAGGGAGGGAGGG
AGTGGCTGGCTGTGGGGGGATGGGATGGGCGGGTGAGGGTGTGGTCGACG
CTGACGTGGGGCCTGGTTTTGGAGGGGAAGTGCGGCAAGAAGGAGGGGAT
TAGGGACGGAGGGAGGGAGGGAGGGCGAGGTGACGATGGGCCATCCTCTC
AGCAGCGGCCGGCGGGAGCAGAGGGAGCAGCAACTGCTAACACCAACACC
AACACCAGCAGCAACACCACCACCAACAACAACAATAACAACAGCAGCAG
CAACAGCGGCAGCAGCAGCAAACCACGGACGAGGTCCTTTGTGGCCTACA
CCCAACAGCAGTCACCCTATGACGACGCCTTCCATCCCTCCCTCCCTCCC
TCCCTCCCCTTCCTCAAACCCGACCTGACAAAGGCCTTCCCCAAAATGGG
TATCGGGCTCATGGCCTGGAGTACTGAGGGAGGGCGAGGGGAAGGGTGGG
AGGGAGGACGCTTTCTCCTCACGCGAAACGACAGCATGCCGCGGGTGTTG
TGGGTGTGGGATTTGGAAGTGCCAGGGCTGGCTGCTGTCCTCACCTTTGC
AGCCCCTGTCCGAAGCGCGCAGTGGAGCCCTTCCTCCCCCCCTTCCTCGC
CCTCCACCCCTCCCTCCTTGTGCATCGTGACGGGCGGGCCGAGGTTCTAT
GTGTGGTCGCCGGCAGTGAGGGAGGGAGGGGGGGAGGGGGGGTTACCTGA
TCCTCCGGCATGGTATGACCTTCCTGTGGGGGATGGGGGTCATTTCGATG
TAATGAAGGTGAGGTGGGCGCCAAGGGAGGGAGGAAGGGAGGGAGGGGTG
GAAGGAAAGGTGGGAGCAGTCGGGAGGCGGATTGAGACGATGAGGTTGGA
GGGGGGAGGGGAGGAGGGGGCGGAAGGGGGGGAGGTGGAGGAGGAGGATG
AGGTGTTTTTGATTGCCTTGATGAGCTCTGAATATTGGTGTGTGTGTGCA
TTGAATCAATGAGGGAGGGAGGAAGGGAATGAGGGATAGAGAGAGGGAGG
GAGGAATATAAAAGAAGAGGGGGCAAAGACACCGTGCAGGTCAGTAAAAT
GGTGGATACGGAAGAGGGGGGGGCGGTTGGAAACTGTTAAAATTCAAACG
AAGAAACGGGAAGGACACCGTTGAGACGAAGGGGGCATCAAATAGAAAGA
GAAGCTTTTCA

Coding sequence (CDS) from alignment at chr27:156691..159251-

>NO27G00420.1 ID=NO27G00420.1|Name=NO27G00420.1|organism=Nannochloropsis oceanica|type=CDS|length=2085bp|location=Sequence derived from alignment at chr27:156691..159251- (Nannochloropsis oceanica)
ATGGGGCGCGATGCAGGCACGAGTAACAGCTTCAGCAGCAGCACCACCAG
CACCAGTACCAGTACCGGTGCCAGCAGCGGAAAAAATGATGCCGCAGCAG
GGCGTCTCAACGACTTCTTATCGTCGACCCGAATCAAGAATCTCCTTTCC
TCCCATGGACATGCCACCCTTGCCGCCGCCGCCTCCAGCAGCACTATCAC
TAGTAGCACCACCAATACTCCGCAATACTCCTCCTCCCCCTCCGCTCCCA
CCCAGGTACAATCAGAACAAAAAGAAGAAATGGGGCAGCTGTACCCACAC
AGCAAGTTCCTGGTGGCTTGGTCTCCGGACGGAAGATACGTCGCTAGCAT
CAGCAAGAAACGGTTGACCGTTAGGGATCCGACCACCATGCTCATTGAAT
GCTACCGTTCGTTGTTCTCTTCCTTCTCCTCCTCCTCCTCTTCTTCTTTG
GCAGCAAGAGGGCTACAGCAGCAGCAGCAGATGCACGAATCAGATTGGTT
AGAATGGGGGGCGGACTCCGATCTAATCGTGTGTGCCCGATGGGCGAGGG
AAGGAGGGAGGGAAGGCGGGCGGGAGGAAGGGGTGGTGGAGGCGTTCCGG
GTGAGTGATTCGACCTGGTCCTGCCGGATTACTGCAGGCGCTGCTGGGTT
CACCTATGCCTGTCTCAGCCCCTCTTTTGATCCCTACATTTCGAGCAGCA
ACACCAAAAACAACAGCAGTGAGAAGGAGGGAGGGAGGGCAGGAGGGAGG
GAAGGGCAGTACCTTTTGACTGTGAGTGACCTGTGGCTATCTCTCTCCTT
GTGGTCGCTTGAAGACGAGGAAGAGGGGCAGGAAGAGGTCTTCTCAGTGG
CCCTCCCAAAAGTGAACGTCAAGCCCGCCTTCTCCCCCGACGGATCCCTG
CTGCTCGTGGCGCGACGGAGGGAGGGGAGGGACGAAGTGGGGCTGTACGG
CAGACGGAGACGAGGAGGGAGCGAGGGAGGACGAGGGAGGGAAGGAGGGC
GGGCGGGAGGAGGGTGGGTGTGTCTGCGTTCATTCTTGCCCGAGACGGCG
GATTTGGTGGCATTAGAATGGGGTGTGAAGAGCGTGGCGCTCTCTGGAGG
GGGAGGGAGGGAGGGAGGGAGGGAGTGGCTGGCTGTGGGGGGATGGGATG
GGCGGGTGAGGGTGTGGTCGACGCTGACGTGGGGCCTGGTTTTGGAGGGG
AAGTGCGGCAAGAAGGAGGGGATTAGGGACGGAGGGAGGGAGGGAGGGCG
AGGTGACGATGGGCCATCCTCTCAGCAGCGGCCGGCGGGAGCAGAGGGAG
CAGCAACTGCTAACACCAACACCAACACCAGCAGCAACACCACCACCAAC
AACAACAATAACAACAGCAGCAGCAACAGCGGCAGCAGCAGCAAACCACG
GACGAGGTCCTTTGTGGCCTACACCCAACAGCAGTCACCCTATGACGACG
CCTTCCATCCCTCCCTCCCTCCCTCCCTCCCCTTCCTCAAACCCGACCTG
ACAAAGGCCTTCCCCAAAATGGGTATCGGGCTCATGGCCTGGAGTACTGA
GGGAGGGCGAGGGGAAGGGTGGGAGGGAGGACGCTTTCTCCTCACGCGAA
ACGACAGCATGCCGCGGGTGTTGTGGGTGTGGGATTTGGAAGTGCCAGGG
CTGGCTGCTGTCCTCACCTTTGCAGCCCCTGTCCGAAGCGCGCAGTGGAG
CCCTTCCTCCCCCCCTTCCTCGCCCTCCACCCCTCCCTCCTTGTGCATCG
TGACGGGCGGGCCGAGGTTCTATGTGTGGTCGCCGGCAGTGAGGGAGGGA
GGGGGGGAGGGGGGGTTACCTGATCCTCCGGCATGGTATGACCTTCCTGT
GGGGGATGGGGGTCATTTCGATGTAATGAAGGTGAGGTGGGCGCCAAGGG
AGGGAGGAAGGGAGGGAGGGGTGGAAGGAAAGGTGGGAGCAGTCGGGAGG
CGGATTGAGACGATGAGGTTGGAGGGGGGAGGGGAGGAGGGGGCGGAAGG
GGGGGAGGTGGAGGAGGAGGATGAGGTGTTTTTGATTGCCTTGATGAGCT
CTGAATATTGGTGTGTGTGTGCATTGAATCAATGA

Synonyms

Publications