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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr27 | genome | chr27:147262..151207 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO27G00400.2 vs.
Match: XP_005822759.1 (hypothetical protein GUITHDRAFT_79481 [Guillardia theta CCMP2712]; EKX35779.1 hypothetical protein GUITHDRAFT_79481 [Guillardia theta CCMP2712]) HSP 1 Score: 213.0 bits (541), Expect = 2.400e-51 Identity = 105/205 (51.22%), Postives = 137/205 (66.83%), Query Frame = 0
Query: 205 TSGIRVNKCFASFASRREADRLVAAGRVKINGKVAEPGIRVNPGDTVTLDNKRVAWEAHVILPTSSTSPSSSSSSSSSSSSSPTKELIYIKYWKPRGVICTTDETIPDNIISTLDFPQRIFPVGRLDKESTGLILLTNDGRVPNAVLRSSLFHRKTYKVRVDQPLTADDLQALREGIVISTPVQRDRIDRVLTAKTLPCEVSMLS 410
+ GIR+NKCF FASRRE+DR V GRV ++G+ A PG RV PG+ V LD K V WE I+ + +P + +YIKYWKPRGV+CTTD + NI+ + P+RIF VGRLDK+STGLILLT+DGRVPN VLRS H K Y VR D+ + +D+ L EG+VI+T QRDR +++TA+TLPCE++ +S
Sbjct: 19 SEGIRINKCFKEFASRRESDRFVQDGRVTVDGRKAFPGERVFPGNVVRLDGKLVQWEGLSII---------------DETVAPQDQFVYIKYWKPRGVVCTTDTRVRGNIVDAVGHPERIFMVGRLDKDSTGLILLTSDGRVPNLVLRSDHKHDKKYMVRADRAIREEDIHKLAEGVVITTTAQRDRKSKIITARTLPCEITRVS 208
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO27G00400.2 ID=NO27G00400.2|Name=NO27G00400.2|organism=Nannochloropsis oceanica|type=mRNA|length=3089bp CTGGCGAAAGTGCTAAAGTTCTATTGTATTGCGTTCGGGAAAAAAGACGG ACCCGACCATGCATAACAAGCGCATCATTTCTTTTGTCTTTCACCTCTAC GCAGCGTTAATGTTGTAACTGCAATCGATCAGGCACCCACCCGCAGCTAA AGCGTGGGGCCTCAATGCCCCCACCTCGTTCCTGCATTGCTTGCTATTCA TACGCTTGGTATGAGAGCTGTGTGGTGTGCGCTTGGCGTGGGATGGGGTG CGTGAGTGTGCGTGCCTCCTGAGTCGTGCCACTTACGTGCCGCCCCGCAG GCCAAGGAGTCTGACAAAAAACGCAGGCTCGTGGCGAGCGAGACAGTAGA AAACTGCGCTCTACACGCAATAGACATGATTATGGGCGAGATGAAGGCAT GTGTGGTCAAGCTATAGTATGCGTTAGGTACCAATTGATATATTTTGGGA GAGGGAAAGAAGGGAGGGAAGAAAGGGACCGTCACTCCGGAACGAGGGAG GTCGGCCCAAGTCGATTGTGCTGTGCAAGGCAAAGCAAAGCTTCCCAGAA GGCTGTCAGTCGGGAGCAAAAATCTGGCGTATGCATATATTGCTTGCACG TCAGACATATGAGGAACTCGTGTGTTCGGAAATTGTTTTTGGCCATTGGT CTTCGGGTTTTGGCTTTCAGCCCCAGCAAGGAAGCAAGCGCTCTCCCTCT CTCCCTCATCTCAACCCACTCCCACATACATTCACAGAGCAATGCCATCG ACCACCCGAAGACAATAGCCCCAACGACAATAAGTGCACGGAACATCGAC GCACTATAATGCCAGGGGCCTGCGCAAGGGGACCCTTTCTCCTGCGACTC GTCACCGTCATCACCATGCTGCTACTTGCCGCAGCAACACGACGACCAGC AGCAAAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGAAGGAGGTGCAG GAGCAGCCTCCAGAACCACTGCCGCCATCACTGCTGCATTCCTTTGTATT CCAAGTGGCAGCAGCCTCGTCAACGTATTCAGAAGACCATACAGTCGCCT CGCTGCCGCAGCCGCTGGACGGGGACAGCCCAGCGACCCCAAGGACGAAG ATAATCGCCGTTGTCCTCCCCATCAAGGAGGAGCGGGAGCAGGAGGAGCA GCAGGAGCACCAGCAGGAGGAGCAGGACAAAGAAATACGATGACAAGCGG AATACGGGTCAATAAATGCTTTGCCTCCTTTGCGTCTCGACGTGAGGCGG ACCGTCTCGTGGCCGCAGGCCGCGTCAAGATCAATGGCAAGGTGGCCGAG CCTGGAATCAGGGTTAATCCCGGAGACACCGTCACGCTCGACAACAAGCG TGTCGCCTGGGAAGCCCATGTCATCCTTCCCACTTCCTCCACCTCCCCCT CCTCGTCCTCGTCCTCGTCCTCGTCCTCGTCATCCTCTCCTACGAAAGAG TTGATCTACATCAAGTACTGGAAGCCGCGGGGCGTGATCTGCACCACCGA CGAGACCATCCCCGACAACATCATCTCCACGCTCGATTTCCCCCAACGGA TCTTCCCCGTGGGTCGCCTCGACAAGGAGAGCACAGGACTTATTCTATTG ACAAACGACGGACGGGTGCCAAACGCCGTCCTCCGTTCTTCCCTCTTCCA TCGTAAGACCTACAAGGTACGAGTAGATCAGCCCCTGACAGCTGACGACC TGCAGGCGTTGAGGGAGGGCATCGTTATCAGCACCCCCGTCCAGCGGGAC CGCATCGATCGTGTCCTGACGGCCAAGACTCTGCCGTGTGAGGTGTCCAT GTTGTCATTAAGGAATACCGCGAAGAGTGATAATAATGGCAATCAGAACA ATCAAAATGCTAATAAAAAGACTATCCAGGAAAATAGCGCGGCGACTACC GACGATTCCGACCTTGCCTTCCTCCGTAATTCGCGGTATTCGAACAACAT GCACTCCAACACACGTGCGTGTTTTACCATTACCCTGAGAGAAGGCCGAA ACCGTCAAATTCGACGGATGTGCGAGGCCCTCGGATTGCGTGTGTTGGAG CTGCACCGTGAGAGCGTCATGGGTATTGGGCTCCAAGGGCTGCAAGGAGA GGGGTGGTGGGCGTACCTGACGGAGGAGGAGGAGGAGAAGGTGAGCGAAG CGGTAGAGCAATGGGAGCGGAAGGAGGGGGTTAGGTTGTCATCGGTGCAG GAAGAGGAGAGGAAGGAAGAGGAAGAGGAGGAGGAGGAGGAGTAAGCGAT CTATGGAGCTTCCCCTCTTCCCTTTCTTCGCTATTTTTGAACAAAATTCA TTCCTATTATCATTCCTCACCTGTGACCTGTACCAATAATCTGATCAAGC CAGGCGGCGTCATCCAAGCTAAGTCCCAACGGCTAATTGAACTTTGACGT AACGGAGAGTCTCATATCATCAATTGAATAATCAATCTTACCGTTAGGAT TTGTCACAAAGCACACACTCAAACCCTTGTGTAGATATGAAATAATAGGC ATCTTTTGACAATCACTTTGACCAGCCATCCGCCGAGAGAGAATACCAGG ACATCTCCCACACGCATGTGCGTTTTTTGGGAGTGAAAAAGGACCAGAAA GGACTCAAAAACCAAGATAAGGCCAGGCGAGACAGACAGAGAGCGAACAA TTCGATGAATACAAATGAAAAATATGATTTAATTGAGGGGGAAATTCGTG CTCGGGTTCGGAACAAAATTATCATTGAGCTTTTTTTGGAGGGGGTGGGT AGATTAAGAGTGTTGTTCGTTTGTCGTGCTCGTGAGTGCCTTGCGTCAAG GATCCAGTTGAATTTCGTGTGTGTGTCCGTGTCCTCTACGAGGGTGCTTC TGTTCTTTTGACTGCAGCTTTGAGCCCGAGTCACAGATGCTCCCTGCACT CTCACTGTAGCAGCTTGTCTGGGACTTGGCGGAAACAATGGCGGTGCGAG GTGCGATCAAGTCGGGCTTGATACGGCCATCTTTGATGCTAGGTCCGATG GAAGAGAGAAGAGAGAAGTAACGGACTATACAGAAAGTTATGTAGTTTTT TTGCTCTTTTTACTTTTTTGGGGTTTTAACCATTACGAG back to topprotein sequence of NO27G00400.2 >NO27G00400.2-protein ID=NO27G00400.2-protein|Name=NO27G00400.2|organism=Nannochloropsis oceanica|type=polypeptide|length=555bp MHILLARQTYEELVCSEIVFGHWSSGFGFQPQQGSKRSPSLPHLNPLPHT FTEQCHRPPEDNSPNDNKCTEHRRTIMPGACARGPFLLRLVTVITMLLLA AATRRPAAKAAAAAAAAAGEGGAGAASRTTAAITAAFLCIPSGSSLVNVF RRPYSRLAAAAAGRGQPSDPKDEDNRRCPPHQGGAGAGGAAGAPAGGAGQ RNTMTSGIRVNKCFASFASRREADRLVAAGRVKINGKVAEPGIRVNPGDT VTLDNKRVAWEAHVILPTSSTSPSSSSSSSSSSSSSPTKELIYIKYWKPR GVICTTDETIPDNIISTLDFPQRIFPVGRLDKESTGLILLTNDGRVPNAV LRSSLFHRKTYKVRVDQPLTADDLQALREGIVISTPVQRDRIDRVLTAKT LPCEVSMLSLRNTAKSDNNGNQNNQNANKKTIQENSAATTDDSDLAFLRN SRYSNNMHSNTRACFTITLREGRNRQIRRMCEALGLRVLELHRESVMGIG LQGLQGEGWWAYLTEEEEEKVSEAVEQWERKEGVRLSSVQEEERKEEEEE EEEE* back to topmRNA from alignment at chr27:147262..151207+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO27G00400.2 ID=NO27G00400.2|Name=NO27G00400.2|organism=Nannochloropsis oceanica|type=mRNA|length=3946bp|location=Sequence derived from alignment at chr27:147262..151207+ (Nannochloropsis oceanica) CTGGCGAAAGTGCTAAAGTTCTATTGTATTGCGTTCGGGAAAAAAGACGG
ACCCGACCATGCATAACAAGCGCATCATTTCTTTTGTCTTTCACCTCTAC
GCAGCGTTAATGTTGTAACTGCAATCGATCAGGCACCCACCCGCAGCTAA
AGCGTGGGGCCTCAATGCCCCCACCTCGTTCCTGCATTGCTTGCTATTCA
TACGCTTGGTATGAGAGCTGTGTGGTGTGCGCTTGGCGTGGGATGGGGTG
CGTGAGTGTGCGTGCCTCCTGAGTCGTGCCACTTACGTGCCGCCCCGCAG
GCCAAGGAGTCTGACAAAAAACGCAGGCTCGTGGCGAGCGAGACAGTAGA
AAACTGCGCTCTACACGCAATAGACATGATTATGGGCGAGATGAAGGCAT
GTGTGGTCAAGCTATAGTATGCGTTAGGTACCAATTGATATATTTTGGGA
GAGGGAAAGAAGGGAGGGAAGAAAGGGACCGTCACTCCGGAACGAGGGAG
GTCGGCCCAAGTCGATTGTGCTGTGCAAGGCAAAGCAAAGCTTCCCAGAA
GGCTGTCAGTCGGGAGCAAAAATCTGGCGTATGCATATATTGCTTGCACG
TCAGACATATGAGGAACTCGTGTGTTCGGAAATTGTTTTTGGCCATTGGT
CTTCGGGTTTTGGCTTTCAGCCCCAGCAAGGAAGCAAGCGCTCTCCCTCT
CTCCCTCATCTCAACCCACTCCCACATACATTCACAGAGCAATGCCATCG
ACCACCCGAAGACAATAGCCCCAACGACAATAAGTGCACGGAACATCGAC
GCACTATAATGCCAGGGGCCTGCGCAAGGGGACCCTTTCTCCTGCGACTC
GTCACCGTCATCACCATGCTGCTACTTGCCGCAGCAACACGACGACCAGC
AGCAAAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGAAGGAGGTGCAG
GAGCAGCCTCCAGAACCACTGCCGCCATCACTGCTGCATTCCTTTGTATT
CCAAGTGGCAGCAGCCTCGTCAACGTATTCAGAAGACCATACAGTCGGTA
TGTCGCAAGAGGTCGAGGGTATGTTCACTCTCCCTCCCTCCCTCCCTTCC
TCCCACCCTCCCCCCCTTCCCTCCCTCCCTCCCTCTCCCTCTCCCTTCGC
TTGTGTACACATGCTCACCTATCCGTACCGTATTCCTCCATAGACATACT
CTTTCCTCCCCTCTTCCCTCCGCTTTCCCCTCCGTTACCACCAGCCTCGC
TGCCGCAGCCGCTGGACGGGGACAGCCCAGCGACCCCAAGGACGAAGATA
ATCGCCGTTGTCCTCCCCATCAAGGAGGAGCGGGAGCAGGAGGAGCAGCA
GGAGCACCAGCAGGAGGAGCAGGACAAAGAAATACGATGACAAGCGGAAT
ACGGGTCAATAAATGCTTTGCCTCCTTTGCGTCTCGACGTGAGGCGGACC
GTCTCGTGGCCGCAGGCCGCGTCAAGATCAATGGCAAGGTACGTTTGCAT
TGCCCTCCCTCCCTCGCTCCTTCTCTCCCTTGAACCCCGCCTCCTTCCCT
CCCTCCTCCCCTACCTCTATCTGACCCCTCGCCATCCCTCTTTCGCTTCC
CTTTTCTCCACGCTCGACAGCCGATATCGAGCCATGAGGTCTCCCCCCAC
TACATCGGCACCTTTCTAACCCCCCCCTCCCGTCCTCCCTCCCACTCTCC
CTCCCCCCTCCCTCCCTCCCTTCAGGTGGCCGAGCCTGGAATCAGGGTTA
ATCCCGGAGACACCGTCACGCTCGACAACAAGCGTGTCGCCTGGGAAGCC
CATGTCATCCTTCCCACTTCCTCCACCTCCCCCTCCTCGTCCTCGTCCTC
GTCCTCGTCCTCGTCATCCTCTCCTACGAAAGAGTTGATCTACATCAAGT
ACTGGAAGCCGCGGTACGTCGTATTGGTCTCCAATCCCTCTCCTTCCCCT
CCCTCTCTCCCTCCATTCCTCCCTCCCTCCCTCCCTCCCTCCTCCCCATC
GGCGTGCCGCCCGTCACCCACCTCCCGCCTCCTATCCCTCCCTCCCTCCC
TCCCCCCAGGGGCGTGATCTGCACCACCGACGAGACCATCCCCGACAACA
TCATCTCCACGCTCGATTTCCCCCAACGGATCTTCCCCGTGGGTCGCCTC
GACAAGGAGAGCACAGGACTTATTCTATTGACAAACGACGGACGGGTGCC
AAACGCCGTCCTCCGTTCTTCCCTCTTCCATCGTAAGACCTACAAGGTAC
GCACGTCCTGCGTATCGTACCCCCCCCTTCCCTTCCTTCCCTCGCTTGCC
TCCCTTCCCTTCCCTCCTTGCATGCGAGATGCATAGACTTTCCCCCTTTA
TCTCTGGGCAATGAACAGCCTAGCCTTGTGGACTTGATCGGCGCCCTTCC
CCCTCATTCCCTCCTTCCCCTTCCGTCGGACTTTGGGGAGGGGCGTCCCA
TGAGATCAGCACCCTTCCAACCCTTCCCGCCCTCCCTCCTTCCCTCCCTC
CTTCCCTCCCTCCCTCCCTCCAGGTACGAGTAGATCAGCCCCTGACAGCT
GACGACCTGCAGGCGTTGAGGGAGGGCATCGTTATCAGCACCCCCGTCCA
GCGGGACCGCATCGATCGTGTCCTGACGGCCAAGACTCTGCCGTGTGAGG
TGTCCATGTTGTCATTAAGGAATACCGCGAAGAGTGATAATAATGGCAAT
CAGAACAATCAAAATGCTAATAAAAAGACTATCCAGGAAAATAGCGCGGC
GACTACCGACGATTCCGACCTTGCCTTCCTCCGTAATTCGCGGTATTCGA
ACAACATGCACTCCAACACACGTGCGTGTTTTACCATTACCCTGAGAGAA
GGCCGAAACCGTCAAATTCGACGGATGTGCGAGGCCCTCGGATTGCGTGT
GTTGGAGCTGCACCGTGAGAGCGTCATGGGTATTGGGCTCCAAGGGCTGC
AAGGAGAGGGGTGGTGGGCGTACCTGACGGAGGAGGAGGAGGAGAAGGTG
AGCGAAGCGGTAGAGCAATGGGAGCGGAAGGAGGGGGTTAGGTTGTCATC
GGTGCAGGAAGAGGAGAGGAAGGAAGAGGAAGAGGAGGAGGAGGAGGAGT
AAGCGATCTATGGAGCTTCCCCTCTTCCCTTTCTTCGCTATTTTTGAACA
AAATTCATTCCTATTATCATTCCTCACCTGTGACCTGTACCAATAATCTG
ATCAAGCCAGGCGGCGTCATCCAAGCTAAGTCCCAACGGCTAATTGAACT
TTGACGTAACGGAGAGTCTCATATCATCAATTGAATAATCAATCTTACCG
TTAGGATTTGTCACAAAGCACACACTCAAACCCTTGTGTAGATATGAAAT
AATAGGCATCTTTTGACAATCACTTTGACCAGCCATCCGCCGAGAGAGAA
TACCAGGACATCTCCCACACGCATGTGCGTTTTTTGGGAGTGAAAAAGGA
CCAGAAAGGACTCAAAAACCAAGATAAGGCCAGGCGAGACAGACAGAGAG
CGAACAATTCGATGAATACAAATGAAAAATATGATTTAATTGAGGGGGAA
ATTCGTGCTCGGGTTCGGAACAAAATTATCATTGAGCTTTTTTTGGAGGG
GGTGGGTAGATTAAGAGTGTTGTTCGTTTGTCGTGCTCGTGAGTGCCTTG
CGTCAAGGATCCAGTTGAATTTCGTGTGTGTGTCCGTGTCCTCTACGAGG
GTGCTTCTGTTCTTTTGACTGCAGCTTTGAGCCCGAGTCACAGATGCTCC
CTGCACTCTCACTGTAGCAGCTTGTCTGGGACTTGGCGGAAACAATGGCG
GTGCGAGGTGCGATCAAGTCGGGCTTGATACGGCCATCTTTGATGCTAGG
TCCGATGGAAGAGAGAAGAGAGAAGTAACGGACTATACAGAAAGTTATGT
AGTTTTTTTGCTCTTTTTACTTTTTTGGGGTTTTAACCATTACGAG back to topCoding sequence (CDS) from alignment at chr27:147262..151207+ >NO27G00400.2 ID=NO27G00400.2|Name=NO27G00400.2|organism=Nannochloropsis oceanica|type=CDS|length=1665bp|location=Sequence derived from alignment at chr27:147262..151207+ (Nannochloropsis oceanica) ATGCATATATTGCTTGCACGTCAGACATATGAGGAACTCGTGTGTTCGGA AATTGTTTTTGGCCATTGGTCTTCGGGTTTTGGCTTTCAGCCCCAGCAAG GAAGCAAGCGCTCTCCCTCTCTCCCTCATCTCAACCCACTCCCACATACA TTCACAGAGCAATGCCATCGACCACCCGAAGACAATAGCCCCAACGACAA TAAGTGCACGGAACATCGACGCACTATAATGCCAGGGGCCTGCGCAAGGG GACCCTTTCTCCTGCGACTCGTCACCGTCATCACCATGCTGCTACTTGCC GCAGCAACACGACGACCAGCAGCAAAAGCAGCAGCAGCAGCAGCAGCAGC AGCAGGAGAAGGAGGTGCAGGAGCAGCCTCCAGAACCACTGCCGCCATCA CTGCTGCATTCCTTTGTATTCCAAGTGGCAGCAGCCTCGTCAACGTATTC AGAAGACCATACAGTCGCCTCGCTGCCGCAGCCGCTGGACGGGGACAGCC CAGCGACCCCAAGGACGAAGATAATCGCCGTTGTCCTCCCCATCAAGGAG GAGCGGGAGCAGGAGGAGCAGCAGGAGCACCAGCAGGAGGAGCAGGACAA AGAAATACGATGACAAGCGGAATACGGGTCAATAAATGCTTTGCCTCCTT TGCGTCTCGACGTGAGGCGGACCGTCTCGTGGCCGCAGGCCGCGTCAAGA TCAATGGCAAGGTGGCCGAGCCTGGAATCAGGGTTAATCCCGGAGACACC GTCACGCTCGACAACAAGCGTGTCGCCTGGGAAGCCCATGTCATCCTTCC CACTTCCTCCACCTCCCCCTCCTCGTCCTCGTCCTCGTCCTCGTCCTCGT CATCCTCTCCTACGAAAGAGTTGATCTACATCAAGTACTGGAAGCCGCGG GGCGTGATCTGCACCACCGACGAGACCATCCCCGACAACATCATCTCCAC GCTCGATTTCCCCCAACGGATCTTCCCCGTGGGTCGCCTCGACAAGGAGA GCACAGGACTTATTCTATTGACAAACGACGGACGGGTGCCAAACGCCGTC CTCCGTTCTTCCCTCTTCCATCGTAAGACCTACAAGGTACGAGTAGATCA GCCCCTGACAGCTGACGACCTGCAGGCGTTGAGGGAGGGCATCGTTATCA GCACCCCCGTCCAGCGGGACCGCATCGATCGTGTCCTGACGGCCAAGACT CTGCCGTGTGAGGTGTCCATGTTGTCATTAAGGAATACCGCGAAGAGTGA TAATAATGGCAATCAGAACAATCAAAATGCTAATAAAAAGACTATCCAGG AAAATAGCGCGGCGACTACCGACGATTCCGACCTTGCCTTCCTCCGTAAT TCGCGGTATTCGAACAACATGCACTCCAACACACGTGCGTGTTTTACCAT TACCCTGAGAGAAGGCCGAAACCGTCAAATTCGACGGATGTGCGAGGCCC TCGGATTGCGTGTGTTGGAGCTGCACCGTGAGAGCGTCATGGGTATTGGG CTCCAAGGGCTGCAAGGAGAGGGGTGGTGGGCGTACCTGACGGAGGAGGA GGAGGAGAAGGTGAGCGAAGCGGTAGAGCAATGGGAGCGGAAGGAGGGGG TTAGGTTGTCATCGGTGCAGGAAGAGGAGAGGAAGGAAGAGGAAGAGGAG GAGGAGGAGGAGTAA back to top
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