|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr26 | genome | chr26:55726..59737 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO26G00170.6 vs.
Match: EWM23051.1 (mitochondrial pyruvate dehydrogenase kinase [Nannochloropsis gaditana]) HSP 1 Score: 639.8 bits (1649), Expect = 5.200e-180 Identity = 308/366 (84.15%), Postives = 333/366 (90.98%), Query Frame = 0
Query: 1 MGWYAGYVEELLAFPKPMDAEQEYDFTCLLASILCDHTSVPRALAHGIQEYRADMSNEDLLDDPGRDAIEQTLTGFYTARIGLRFLVEHHIVSNNAREGYSGIIASNCSPHQISQAAAADATRLCRAALGNAPPIRIIGKEDDTFCYIPSHLYYMVTEALKNSCRAVVEKHDPIYQAAAREVAPSRHLDQMLRAEALRQAQARVNPAELPPIKVVVAMGEEDVTIKVADEGGGVPRSDLGLLWTFFYTTFPPSIPSSPAPLAAGGAGGGSLDENVTVTNAAGSAASSPFTFPNVGTEPVLAGHGMGLPLSRIYARYFGGDLEVKSLEGFGMDSYLHLCKLGDRCEDLGLQVMRSPAGRDSTPTEAA 367
MGWYAGYVEEL AFPKPMD+EQEYDFTCLLASILCDHTS+PRALAHGIQEYRADMS EDLL DP R++IEQTLTGFYTARIGLRFLVEHHIVSN+AREGYSGIIAS+CSP Q++ AAAADA RLCRAALGNAP +R IG + D FCY+PSHLYYM+ E LKNSCRAVVEKHDPIY+AAA EV+PS LDQ +R EA ++A AR P ELPP+KV+VAMGEEDVTIKVADEGGGVPRSDL LLWTFFYTTFPPS PSSPAPL G AGGGSLDENVTVTN AG+ ++ PFTFPNVGTEPVLAGHGMGLPLSRIYARYFGGDLEVKSLEGFGMDSYLHLCKLGD+CED+GLQVMRSPAGRDSTPTE +
Sbjct: 113 MGWYAGYVEELQAFPKPMDSEQEYDFTCLLASILCDHTSIPRALAHGIQEYRADMSYEDLLLDPDRESIEQTLTGFYTARIGLRFLVEHHIVSNDAREGYSGIIASHCSPRQVATAAAADAERLCRAALGNAPTVRTIGTDKDDFCYVPSHLYYMIVETLKNSCRAVVEKHDPIYRAAALEVSPSTLLDQRIRLEARQKAFARATPTELPPVKVIVAMGEEDVTIKVADEGGGVPRSDLRLLWTFFYTTFPPSFPSSPAPLPGGRAGGGSLDENVTVTNPAGNVSAGPFTFPNVGTEPVLAGHGMGLPLSRIYARYFGGDLEVKSLEGFGMDSYLHLCKLGDKCEDIGLQVMRSPAGRDSTPTETS 478
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO26G00170.6 ID=NO26G00170.6|Name=NO26G00170.6|organism=Nannochloropsis oceanica|type=mRNA|length=1448bp GCCATTCTCGACTCTCCGCCCATCCCTCCCCTCTTCCCTACTTCCCTCCG TCCCTCCTTTCGTCCCTCCCTCCTTCCCTTCCTATTTCCCCTCCAGGTAT TCAGAACGTGATGGGCTGGTACGCGGGCTACGTAGAGGAGCTTTTGGCGT TCCCCAAGCCCATGGACGCAGAGCAGGAATACGATTTCACCTGTCTCCTG GCCTCCATCCTCTGTGACCACACGTCGGTGCCACGGGCCTTAGCACACGG CATACAGGAGTACAGAGCCGACATGAGCAATGAAGATCTGCTGGATGACC CGGGGAGGGATGCAATCGAGCAGACACTGACGGGCTTCTACACCGCCAGA ATAGGGCTCCGCTTCCTCGTCGAGCATCATATCGTCAGCAACAATGCCCG CGAGGGCTACTCCGGGATCATCGCCTCCAACTGCTCCCCCCACCAAATCT CCCAAGCCGCCGCCGCCGACGCCACGCGGCTCTGTCGAGCCGCCTTAGGG AACGCTCCTCCCATACGCATCATCGGCAAGGAAGACGACACCTTCTGCTA CATTCCCTCCCACCTCTACTATATGGTCACCGAGGCCCTCAAGAACTCCT GTCGCGCAGTGGTCGAGAAGCACGATCCAATTTATCAAGCAGCAGCTAGA GAGGTCGCCCCCTCCCGCCACCTGGACCAAATGTTGAGAGCAGAGGCTCT CAGACAGGCTCAAGCTCGTGTCAACCCGGCAGAACTGCCCCCAATCAAAG TAGTGGTGGCCATGGGCGAGGAGGACGTCACGATCAAGGTGGCGGACGAA GGCGGCGGAGTCCCTCGGTCTGACTTAGGCCTGCTCTGGACCTTCTTCTA CACCACGTTCCCTCCCTCTATCCCTTCCTCCCCCGCGCCCTTGGCAGCAG GAGGGGCCGGAGGGGGCTCATTGGACGAGAATGTGACCGTGACGAACGCA GCAGGCAGCGCGGCTTCCTCTCCTTTCACTTTCCCCAACGTCGGCACCGA GCCTGTACTAGCGGGGCATGGGATGGGCCTTCCCCTTTCTCGGATCTACG CCCGCTACTTCGGCGGAGACCTGGAGGTTAAGTCTCTAGAGGGTTTCGGG ATGGACTCCTATCTCCATCTCTGCAAACTGGGGGACCGCTGCGAAGACCT GGGGTTGCAGGTTATGCGCAGCCCAGCGGGTCGCGATAGTACCCCGACGG AGGCCGCACGAAAAATTTCTTAGCGTAGCGGACATGAAAAGGAGGGGAGA AGAGAGGAGGTGTGTGAGTGGGAAGGCGGAAAGATACGAGTACTGAGTGA AGGGATAGGGGCACACACAATATCGTCTAGGCTTCTTTCTTCCGCCTGCA TGTCAGCCTGCTTCGACTGAACGTAAGATGCCCATGCACAATTATGAAGG AAAATTGCGAATGAAATAATGAGCGAGATTTTCTGTATCTTTGTCGTT back to topprotein sequence of NO26G00170.6 >NO26G00170.6-protein ID=NO26G00170.6-protein|Name=NO26G00170.6|organism=Nannochloropsis oceanica|type=polypeptide|length=371bp MGWYAGYVEELLAFPKPMDAEQEYDFTCLLASILCDHTSVPRALAHGIQE YRADMSNEDLLDDPGRDAIEQTLTGFYTARIGLRFLVEHHIVSNNAREGY SGIIASNCSPHQISQAAAADATRLCRAALGNAPPIRIIGKEDDTFCYIPS HLYYMVTEALKNSCRAVVEKHDPIYQAAAREVAPSRHLDQMLRAEALRQA QARVNPAELPPIKVVVAMGEEDVTIKVADEGGGVPRSDLGLLWTFFYTTF PPSIPSSPAPLAAGGAGGGSLDENVTVTNAAGSAASSPFTFPNVGTEPVL AGHGMGLPLSRIYARYFGGDLEVKSLEGFGMDSYLHLCKLGDRCEDLGLQ VMRSPAGRDSTPTEAARKIS* back to topmRNA from alignment at chr26:55726..59737+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO26G00170.6 ID=NO26G00170.6|Name=NO26G00170.6|organism=Nannochloropsis oceanica|type=mRNA|length=4012bp|location=Sequence derived from alignment at chr26:55726..59737+ (Nannochloropsis oceanica) GCCATTCTCGACTCTCCGCCCATCCCTCCCCTCTTCCCTACTTCCCTCCG
TCCCTCCTTTCGTCCCTCCCTCCTTCCCTTCCTATTTCCCCTCCAGGTAT
TCAGAACGTGATGGGCTGGTACGCGGGCTACGTAGAGGAGCTTTTGGCGT
TCCCCAAGCCCATGGACGCAGAGCAGGTAGTTGGGGAGGGAGGGAGGGAG
GGGAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGGTGTGATGGGCCTAATGGGAGGTAGGGGGGAGGGGACGGGGGGAGGA
CAGGGAGGGAGGGAGGGAGGGAGGGAAGGAGATGTCGAGTTTGATAAGAG
CTGCTCCCTTGTCTCGCCCTTCTTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCTCCCCTTCTTTCCTAGCTCCCTAAGTTGGACGATAATTTGAACAGC
ATTCTTTCTTCGATGCTACGTGGCGCTCACCTTGATATCTTTCCCTCTCT
TCCCTCCCTTCCTCCTTCTCTAGGAATACGATTTCACCTGTCTCCTGGCC
TCCATCCTCTGTGACCACACGTCGGTGCCACGGGCCTTAGCACACGGTAA
GGAAGGGAGGGAGAGAGGGAGGGAGGGGAAGAAGGTGGGAAGTTGAAGGG
AAAGGGAGGGAGGGAGGAGGGACGGGATGAAAGGAGAGTCAAAGACTTAT
TCTTGTTCACGTGATTGTAATCTAATTTCTATTTCTCTAATTTACTTATT
TCGTTTTAATTCACAGATTGATTCATGTGTTTATCAATTCTCTCTGTTGT
CCCTGATGTGTTTATCAATTCTCTCTGTTGTCCCTGATGTGTTTATCAAT
TCTCTCTGTTGTCCCTGATGTGTTTATCAATTCTCTCTGTTGTCCCTGAT
GTGTTTATCAATTCTCTCTGTTGTCCCTGATGTGTTTATCAATTCTCTCT
GTTGTCCCTGATGTGTTTATCAATTCTCTCTGTTGTCCCTGATGTGTTTA
TCAATTCTCTCTGTTGTCCCTGATGTGTTTATCAATTCTCTCTGTTGTCC
CTGATGTGTTTATCAATTCTCTCTGTTGTCCCTGATGTGTTTATCAATTC
TCTCTGTTGTCCCTGATGTGTTTATCAATTCTCTCTGTTGTCCCTGATGT
GTTTATCAATTCTCTCTGTTGTCCCTGATGTGTTTATCAATTCTCTCTGT
TGTCCCTGATGTGTTTATCAATTCTCTCTGTTGTCCCTGATGTGTTTATC
AATTCTCTCTGTTGTCCCTGCAGGCATACAGGAGTACAGAGCCGACATGA
GCAATGAAGATCTGCTGGATGACCCGGGGAGGGATGCAATCGAGCAGGTA
GAGGGAGGGAGAAAAGGGAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGAGGAAGGAAGGGATTGAAAGCCTGGAGCCTACTGTGTCTTCCC
CTTACCTCTGTTTTGCTCCCCTCATCTCTACACCTACGCACCCCTCCTAT
TCCATCCCCCCACGCGTGTACAGACACTGACGGGCTTCTACACCGCCAGA
ATAGGGCTCCGCTTCCTCGTCGAGCATCATATCGTCAGCAACAATGCCCG
GTACACCCCTCCCTCCCCCCCGCCCTCCATCCCTCCCTCCCTCCCTTCAT
CCTTTTCATCTCATCCACTCTCCCTCTCCCTCTCCCTCTCCCTCCTTTTT
CTATTTCTCTAGCGAGGGCTACTCCGGGATCATCGCCTCCAACTGCTCCC
CCCACCAAATCTCCCAAGCCGCCGCCGCCGACGCCACGCGGTGCGTCCTC
TCCCTTCGCCCCTCCCTCCCTCCCTCCCTCTTTTCCTTCCTCCCTCTTTC
TCCCCAAATCACTTCGATTTCTCGCACTCACCCTCCCTCCCATTCGCCTT
CCCTCCCTCCCTCAGGCTCTGTCGAGCCGCCTTAGGGAACGCTCCTCCCA
TACGCATCATCGGCAAGGAAGACGACACCTTCTGCTACATTCCCTCCCAC
CTCTACTATATGGTCACCGAGGCCCTCAAGGTATCTCCTCCATCCCTCCC
TCTCTCCTTTCCGTGTATCGCCCCTTTAGTCTCATTTCCCCCTCCCTCCC
TCCCTCCCTCCCTTCCTCCCTCCCTCCCTCCCTCACTTTCTTCCTTCCTT
CCTCCCCCTCTTCGAAGAACTCCTGTCGCGCAGTGGTCGAGAAGCACGAT
CCAATTTATCAAGCAGCAGCTAGAGAGGTCGCCCCCTCCCGCCACCTGGA
CCAAATGTTGAGAGCAGAGGCTCTCAGACAGGTAGGCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCTTTGTATCCCCGCATCTATCACTCACGTCTC
CCTCCCTCCCTCCCTCCCTCCCTTCATTTGCCCCCAACAAAATTGTGATA
GCATTTACACCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCAGGCTCAAGCTCGTGTCAACCCGGCAGAACTGCCCCCAAT
CAAAGTAGTGGTGGCCATGGGCGAGGAGGACGTCACGATCAAGGTAGGGC
GGAAGGGAAAACGTGAGGGAGGGAGAAATGAAAAGAATAAAAACTCAAGC
ACCACGGACCTCCCTTGTTTTTTGGGTTGACTTAGGACCACATGCATCCT
TATTCTCTCCCTCCCTCTCCTTCCCTTCCTCCCTCTCCTTCCTCTCTCGC
TCCCTCTCTTCCTCAGGTGGCGGACGAAGGCGGCGGAGTCCCTCGGTCTG
ACTTAGGCCTGCTCTGGACCTTCTTCTACACCACGTTCCCTCCCTCTATC
CCTTCCTCCCCCGCGCCCTTGGCAGCAGGAGGGGCCGGAGGGGGCTCATT
GGACGAGAATGTGACCGTGACGGTGAGGAAGGAAGGAAGAGAGGGAGGGA
TGGAGGAAGGGAGGGAAGAAGGATTGAAGGAAAAATACGATGTCTCATCT
TTTCTCTTTCTTTTAATACATTCCACCGGGACTGGGATATTCAGAACGCA
GCAGGCAGCGCGGCTTCCTCTCCTTTCACTTTCCCCAACGTCGGCACCGA
GCCTGTACTAGCGGGGCATGGTAATCCAGGAAGGGAGGGGGAGATGGAGG
GATGGAGGGGAGGGAGGGATGATGGGAATGGATGAGTCTAAGGCATGATC
ATTGATAGCATCCCGTGCGTGGGGAAAGAGGGATGGGGACAGAGAGTGAG
GGAGGGAAGAAAAATGCATCCACCGACCTCTATTCATCAATTTATGTATC
GATCTATCCTCTATTTCTACTTCTACTGTTACTACAACTACTTCTACCTT
TACTGATGCTGCTGCCGATACCACAGGGATGGGCCTTCCCCTTTCTCGGA
TCTACGCCCGCTACTTCGGCGGAGACCTGGAGGTAGGTCATAGGAAATCC
GTTAGGAAGACACTCTTACCGTCTTCCTTCTCAAGGCTTTTTCTCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCTTCTTCATAGGTTAAGTCTCTAGA
GGGTTTCGGGATGGACTCCTATCTCCATCTCTGCAAACTGGGGGACCGCT
GCGAAGACCTGGGGTTGCAGGTATGAAGGGAGGGAAGGAGGAAAGGAGTG
GTGAACTGCCTTGTATGTCTATGCATGTGATTCAGAGACATGAGAGGTGT
GCTATAGGTGAGGAGCGTGCGTGTATGCTGACTTCTTTTTCTTACTGCCT
TTCTCTCCCTGCCATACTCCACAGGTTATGCGCAGCCCAGCGGGTCGCGA
TAGTACCCCGACGGAGGCCGCACGAAAAATTTCTTAGCGTAGCGGACATG
AAAAGGAGGGGAGAAGAGAGGAGGTGTGTGAGTGGGAAGGCGGAAAGATA
CGAGTACTGAGTGAAGGGATAGGGGCACACACAATATCGTCTAGGCTTCT
TTCTTCCGCCTGCATGTCAGCCTGCTTCGACTGAACGTAAGATGCCCATG
CACAATTATGAAGGAAAATTGCGAATGAAATAATGAGCGAGATTTTCTGT
ATCTTTGTCGTT back to topCoding sequence (CDS) from alignment at chr26:55726..59737+ >NO26G00170.6 ID=NO26G00170.6|Name=NO26G00170.6|organism=Nannochloropsis oceanica|type=CDS|length=1113bp|location=Sequence derived from alignment at chr26:55726..59737+ (Nannochloropsis oceanica) ATGGGCTGGTACGCGGGCTACGTAGAGGAGCTTTTGGCGTTCCCCAAGCC CATGGACGCAGAGCAGGAATACGATTTCACCTGTCTCCTGGCCTCCATCC TCTGTGACCACACGTCGGTGCCACGGGCCTTAGCACACGGCATACAGGAG TACAGAGCCGACATGAGCAATGAAGATCTGCTGGATGACCCGGGGAGGGA TGCAATCGAGCAGACACTGACGGGCTTCTACACCGCCAGAATAGGGCTCC GCTTCCTCGTCGAGCATCATATCGTCAGCAACAATGCCCGCGAGGGCTAC TCCGGGATCATCGCCTCCAACTGCTCCCCCCACCAAATCTCCCAAGCCGC CGCCGCCGACGCCACGCGGCTCTGTCGAGCCGCCTTAGGGAACGCTCCTC CCATACGCATCATCGGCAAGGAAGACGACACCTTCTGCTACATTCCCTCC CACCTCTACTATATGGTCACCGAGGCCCTCAAGAACTCCTGTCGCGCAGT GGTCGAGAAGCACGATCCAATTTATCAAGCAGCAGCTAGAGAGGTCGCCC CCTCCCGCCACCTGGACCAAATGTTGAGAGCAGAGGCTCTCAGACAGGCT CAAGCTCGTGTCAACCCGGCAGAACTGCCCCCAATCAAAGTAGTGGTGGC CATGGGCGAGGAGGACGTCACGATCAAGGTGGCGGACGAAGGCGGCGGAG TCCCTCGGTCTGACTTAGGCCTGCTCTGGACCTTCTTCTACACCACGTTC CCTCCCTCTATCCCTTCCTCCCCCGCGCCCTTGGCAGCAGGAGGGGCCGG AGGGGGCTCATTGGACGAGAATGTGACCGTGACGAACGCAGCAGGCAGCG CGGCTTCCTCTCCTTTCACTTTCCCCAACGTCGGCACCGAGCCTGTACTA GCGGGGCATGGGATGGGCCTTCCCCTTTCTCGGATCTACGCCCGCTACTT CGGCGGAGACCTGGAGGTTAAGTCTCTAGAGGGTTTCGGGATGGACTCCT ATCTCCATCTCTGCAAACTGGGGGACCGCTGCGAAGACCTGGGGTTGCAG GTTATGCGCAGCCCAGCGGGTCGCGATAGTACCCCGACGGAGGCCGCACG AAAAATTTCTTAG back to top
|