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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr26 | genome | chr26:48828..52196 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO26G00150.1 vs.
Match: WP_020229102.1 (long-chain-fatty-acid--CoA ligase [Acidovorax sp. MR-S7]; GAD23194.1 acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Acidovorax sp. MR-S7]) HSP 1 Score: 679.9 bits (1753), Expect = 7.900e-192 Identity = 341/600 (56.83%), Postives = 418/600 (69.67%), Query Frame = 0
Query: 40 GLMMNYPLLISSLLTHAAKHHPDTPIVSRRHEEAGRKEAKLHRYTYLEMHARSKRLANVLEGRLGVTQGDRVATLALNTYRHMELYFAVSGTGAILHTLNPRLFPETLTWIISHAQDTVVFFDACFSPLVERLVSHCPTVKHWVCLVDEDSMPSLSPSPSLPPGVLLNYEALLKEASEEYAWPVFDETAASSLCYTSGTTGHPKGVLYSHRSTILHSFAAALPDSLNLSARDAVLPVVPLFHVNAWGIPYSAALVGCKLVLPGPSLDGESLYNLIEEEEVTVSAGVPTVWLGLLNYMSQNNKDGFQAMKRTVVGGAACPPSMLRAFVEGHGVDVLHAWGMTELSPLGTACTLKGKHLPLSSDERYALLNKQGRAIYGADFKIVAPSHPPSLSPSPPLLREVPWDGISQGELCVRGNWVVSKYYQGGGKAGKEGEAEEGCFYKDEEGLKWFLTGDVATISPDGYMNITDRSKDVIKSGGEWISSIELENVAMSHPQVAMAAVIAMPHPKWDERPLLIVVPKPAPPSSSSSSSTSSTATTNFPFSSSLASSPPLTKVSLLQHFEGKVAKWWIPDDVVLVESIPLGATGKVLKTELRKRFEGH 640
GLM + PLLISSL+T A +HH D IVSRR E +HRYTY ++ RS++LAN +EG LG+ GDRVA+LA N YRHME+YF VSG+G +LHT+NPRL PE + WI++HA+D V+ FD F PLV+ + + CPTVK WV L D D +P+ S P L++YEA + AS EY WPVFDE +ASS+CYTSGTTG+PK LYSHRST LH++AAALPD +NLSARDAVLPVVP+FHVNAWGIPYSAAL GCK+V PGP+LDG+S+Y LIE E VT +AGVPTVW LL ++ F +++RTV+GG+ACPP+M+ AF EG+GV VLHAWGMTE+SPLGT C+LK KHL + D + +L KQGRAIYG D KIV RE PWDG + G+L VRG W++ YY+G E KDE G+ WF TGDVATI DGYM ITDRSKDVIKSGGEWISSI++EN+AM+HP VAMAA I MPHPKWDERP++ V +P +T+ LL +EGK AKW IPDDVV V++IPLGATGK+LKT LR++ G+
Sbjct: 3 GLMQSQPLLISSLITFAERHHGDGEIVSRR------VEGDIHRYTYRDLARRSRQLANAIEG-LGLQSGDRVASLAWNGYRHMEMYFGVSGSGRVLHTINPRLHPEQIAWIMNHAEDQVLCFDMTFLPLVQAVHAKCPTVKRWVALCDADKLPADSGIPG-----LVSYEAWIGGASSEYQWPVFDENSASSMCYTSGTTGNPKAALYSHRSTTLHAYAAALPDVMNLSARDAVLPVVPMFHVNAWGIPYSAALTGCKVVFPGPALDGKSVYELIESEGVTFAAGVPTVWQMLLGHVQAGGLK-FSSLQRTVIGGSACPPAMITAFQEGYGVTVLHAWGMTEMSPLGTLCSLKNKHLKMDKDAQMHILQKQGRAIYGVDMKIVGADG-----------REQPWDGKTYGDLLVRGPWILDTYYKG-----------ESPLVKDEHGVGWFPTGDVATIDADGYMQITDRSKDVIKSGGEWISSIDIENIAMAHPAVAMAACIGMPHPKWDERPIVAVTKRP---------------------------GKEVTREELLAFYEGKTAKWQIPDDVVFVDAIPLGATGKMLKTRLREQLAGY 540
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO26G00150.1 ID=NO26G00150.1|Name=NO26G00150.1|organism=Nannochloropsis oceanica|type=mRNA|length=1923bp ATGCACCGTCATGTTTCCCGTCTTCTCCTGCCCTCTCGACACAGCAGTGC GTACCGCTATCGTCTTCGTTCTCGCGCCGCGTCCTACTCCTCAGCCTCGA CCGCGCCTTCAACCCCTGGCCTGATGATGAATTACCCTCTCCTTATCTCT TCCCTCTTGACCCACGCCGCAAAGCATCATCCGGACACGCCCATCGTCAG CCGTCGACATGAGGAGGCAGGACGTAAAGAAGCGAAGCTGCATCGATATA CGTATCTGGAGATGCACGCACGGAGCAAGCGCCTGGCGAATGTTCTGGAA GGGAGGTTGGGCGTCACGCAAGGAGACAGGGTGGCGACACTGGCTTTGAA CACGTACAGACACATGGAACTCTACTTTGCTGTCTCCGGGACCGGCGCCA TCCTCCACACTCTGAACCCTCGCCTCTTTCCCGAGACTTTGACATGGATC ATAAGCCACGCCCAGGACACCGTGGTGTTTTTCGATGCCTGCTTCTCTCC CCTCGTTGAGCGCCTGGTGTCGCACTGTCCGACCGTCAAGCACTGGGTCT GCCTGGTGGACGAAGACAGCATGCCCTCCCTCTCTCCCTCCCCCTCTCTC CCTCCTGGTGTGCTGCTGAATTATGAAGCACTCTTGAAGGAGGCGAGTGA GGAGTACGCCTGGCCTGTGTTTGACGAGACGGCGGCGTCCAGCTTGTGCT ACACGAGTGGAACGACGGGCCACCCAAAAGGAGTCCTGTATTCTCACCGT TCCACCATCCTTCACTCTTTCGCTGCTGCGCTTCCCGACTCTCTCAACCT GTCCGCCCGCGACGCCGTTTTGCCGGTGGTACCGCTCTTTCACGTCAATG CATGGGGCATCCCTTACTCCGCGGCTTTGGTAGGGTGCAAGTTGGTACTC CCCGGGCCTTCACTCGACGGAGAATCCCTCTATAATCTGATAGAGGAAGA GGAGGTCACGGTCTCCGCCGGCGTCCCCACGGTGTGGCTTGGCCTCTTGA ACTACATGAGCCAGAACAACAAAGACGGGTTCCAAGCCATGAAACGCACT GTCGTGGGAGGCGCTGCCTGCCCGCCTTCCATGCTGCGGGCCTTCGTCGA GGGCCACGGCGTGGACGTGCTGCACGCCTGGGGAATGACGGAGTTGTCGC CCCTCGGCACGGCGTGCACCCTCAAGGGCAAGCACCTCCCTCTTTCCTCC GACGAGAGATACGCTCTCCTCAACAAGCAAGGCAGAGCCATATACGGCGC CGACTTCAAAATCGTCGCTCCCTCGCACCCTCCCTCCCTTTCTCCTTCCC CTCCCCTCTTGAGGGAAGTCCCCTGGGATGGCATCTCTCAAGGCGAGCTG TGTGTGCGGGGAAATTGGGTGGTCTCAAAATACTACCAAGGAGGGGGGAA GGCAGGGAAGGAGGGAGAGGCCGAGGAAGGGTGTTTTTACAAGGACGAGG AAGGGCTAAAGTGGTTCCTGACAGGAGATGTCGCCACCATTAGTCCAGAT GGATATATGAATATAACTGACCGGAGCAAGGACGTGATCAAGAGCGGTGG GGAATGGATCTCCTCCATCGAGCTCGAGAATGTCGCCATGAGCCATCCCC AGGTAGCCATGGCAGCCGTTATCGCAATGCCGCACCCTAAATGGGACGAA CGCCCACTCCTTATCGTCGTGCCCAAACCGGCACCTCCCTCGTCATCCTC GTCCTCCTCCACCTCCAGCACCGCCACCACAAACTTCCCTTTTTCTTCCT CCCTCGCTTCCTCCCCACCATTGACCAAGGTTTCCCTCCTCCAACACTTC GAAGGGAAGGTAGCCAAGTGGTGGATTCCTGACGATGTGGTCCTTGTCGA GTCCATCCCTCTAGGTGCCACGGGGAAAGTGCTCAAGACCGAGCTCCGAA AGCGTTTTGAAGGACACACGTAA back to topprotein sequence of NO26G00150.1 >NO26G00150.1-protein ID=NO26G00150.1-protein|Name=NO26G00150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=641bp MHRHVSRLLLPSRHSSAYRYRLRSRAASYSSASTAPSTPGLMMNYPLLIS SLLTHAAKHHPDTPIVSRRHEEAGRKEAKLHRYTYLEMHARSKRLANVLE GRLGVTQGDRVATLALNTYRHMELYFAVSGTGAILHTLNPRLFPETLTWI ISHAQDTVVFFDACFSPLVERLVSHCPTVKHWVCLVDEDSMPSLSPSPSL PPGVLLNYEALLKEASEEYAWPVFDETAASSLCYTSGTTGHPKGVLYSHR STILHSFAAALPDSLNLSARDAVLPVVPLFHVNAWGIPYSAALVGCKLVL PGPSLDGESLYNLIEEEEVTVSAGVPTVWLGLLNYMSQNNKDGFQAMKRT VVGGAACPPSMLRAFVEGHGVDVLHAWGMTELSPLGTACTLKGKHLPLSS DERYALLNKQGRAIYGADFKIVAPSHPPSLSPSPPLLREVPWDGISQGEL CVRGNWVVSKYYQGGGKAGKEGEAEEGCFYKDEEGLKWFLTGDVATISPD GYMNITDRSKDVIKSGGEWISSIELENVAMSHPQVAMAAVIAMPHPKWDE RPLLIVVPKPAPPSSSSSSSTSSTATTNFPFSSSLASSPPLTKVSLLQHF EGKVAKWWIPDDVVLVESIPLGATGKVLKTELRKRFEGHT* back to topmRNA from alignment at chr26:48828..52196+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO26G00150.1 ID=NO26G00150.1|Name=NO26G00150.1|organism=Nannochloropsis oceanica|type=mRNA|length=3369bp|location=Sequence derived from alignment at chr26:48828..52196+ (Nannochloropsis oceanica) ATGCACCGTCATGTTTCCCGTCTTCTCCTGCCCTCTCGACACAGCAGTGC
GTACCGCTATCGTCTTCGTTCTCGCGCCGCGTCCTACTCCTCAGCCTCGA
CCGCGCCTTCAACCCCTGGCCTGATGATGAATTACCCTCTCCTTATCTCT
TCCCTCTTGACCCACGCCGCAAAGCATCATCCGGACACGCCCATCGTCAG
CCGTCGACATGAGGAGGCAGGACGTAAAGAAGCGAAGCTGCATCGATATA
CGTATCTGGAGATGCACGCACGGAGCAAGCGCCTGGCGAATGTTCTGGAA
GGGAGGTTGGGCGTCACGCAAGGAGACAGGGTGGCGACACTGGCTTTGAA
CACGTACAGGTAGAGTAGAGATGGTGAGGCGTTCTAAGGCTCTGTATTAT
TGTTGAATACCTCCTTCACATTGTTCCATATTTTGCCCCCCAACCAGACA
TCCATTCATCTAACCACCTCCCTTTCGCTTGCTCCCTCCCTCTCTCCCTC
CCTCCCTTCCCCAAAACACAGACACATGGAACTCTACTTTGCTGTCTCCG
GGACCGGCGCCATCCTCCACACTCTGAACCCTCGCCTCTTTCCCGAGACT
TTGACATGGATCATAAGCCACGCCCAGGACACCGTGGTGTTTTTCGATGC
CTGCTTCTCTCCCCTCGTTGAGCGCCTGGTGTCGCACTGTCCGACCGTCA
AGCACTGGGTCTGCCTGGTGGACGAAGACAGCATGCCCTCCCTCTCTCCC
TCCCCCTCTCTCCCTCCTGGTGTGCTGCTGAATTATGAAGCACTCTTGAA
GGAGGCGAGTGAGGAGTACGCCTGGCCTGTGTTTGACGAGACGGCGGCGT
CCAGCTTGTGCTACACGAGTGGAACGACGGGTAAGAGCCTCTGGCCAACC
CTGTTTCCCCCTTCCCATAGTCGCCCGCTCTTCCCCAACGAAACCTGACA
GGCAGCAATTATTTTTTCTTAAAGCTCCATCCCTCCCTCCCTCCCTCCCT
TTCTCCTTCTCACTACAGGCCACCCAAAAGGAGTCCTGTATTCTCACCGT
TCCACCATCCTTCACTCTTTCGCTGCTGCGCTTCCCGACTCTCTCAACCT
GTCCGCCCGCGACGCCGTTTTGCCGGTGGTACCGCTCTTTCACGTCAATG
CATGGGGTGAGAGGGGAGTGGGAAGGAGGGAGGGAAGGAGGGAGGGAAGG
AGGAGGGGAGGGAGGGGGGAAGGGCGACTCATGTGACACAAACGTGAAAT
ATTCCTCCCTCTCTTTCTCTTTCCATTATCCCCACCCCGTGCATTGGCGT
GAAATAGCGGTACCACCGGCAAAACGGCAAAGCCGGATGCCCTCACTTCA
TGTTCTTGGCCGGTCCCTAGCTCAACCAGCACATCCTTCCCTCCCTCCCT
TCCACCCTCCAACCCTCCCTCCAGGCATCCCTTACTCCGCGGCTTTGGTA
GGGTGCAAGTTGGTACTCCCCGGGCCTTCACTCGACGGAGAATCCCTCTA
TAATCTGATAGAGGAAGAGGAGGTGAGAGAGACTGAGAAATCGGTTGAGG
GGGGGAGGGAGGGAAAGGTCATCGTGACCACCGGTGCAAAAAATGGTTGC
GAGGCAATTCACTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTATCTTAGGTCACGGTCTCCGCCGGCGTCCCCACGGTGTGGC
TTGGCCTCTTGAACTACATGAGCCAGAACAACAAAGACGGGTTCCAAGCC
ATGAAACGCACTGTCGTGGGAGGCGCTGCCTGCCCGCCTTCCATGCTGCG
GGCCTTCGTCGAGGGCCACGGCGTGGACGTGCTGCACGCCTGGGGAATGA
CGGAGTTGTCGCCCCTCGGCACGGCGTGCACCCTCAAGGTAGGTAGGCCG
GGGGGCAGTCGTTCTTATCCCCCAAAATCGCTCTCTCCCCCCATCCCTCC
GTCCCTTCTTCCCATGCCATTCTTCGTTCCCTTGTAGTGGATCACGAGGG
GGATTTGCTTCAAGGTAGATACGTATCACTCGCTTCCTCTATTCCTCGCT
CTCTCGCCCCCTCCCACCTTTTCTAGAAAATTGATAGCTTGGCCAAGGAG
AATCCTCCCTCTCACCCTCCCTCTCACCCTCCCTCTCACCCTCCCTCTCA
CCCTTCCTCCCTTGCTAGGGCAAGCACCTCCCTCTTTCCTCCGACGAGAG
ATACGCTCTCCTCAACAAGCAAGGCAGAGCCATATACGGCGCCGACTTCA
AAATCGTCGCTCCCTCGCACCCTCCCTCCCTTTCTCCTTCCCCTCCCCTC
TTGAGGGAAGTCCCCTGGGATGGCATCTCTCAAGGCGAGCTGTGTGTGCG
GGGAAATTGGGTGGTCTCAAAATACTACCAAGGAGGGGGGAAGGCAGGGA
AGGAGGGAGAGGCCGAGGAAGGGTGTTTTTACAAGGTGAGTTGTTGGTGT
GAAAATGGGTATCCGGGGTTTTGAGTTACTTTCCTAGGCTTTAAATTTAT
TGTATGCATGGACATAAATTGTGATTCCTTTCTAGCTCCACTCCATTATT
CCTTCCGTCCCCCCCTCCTTCCCCTTAGGACGAGGAAGGGCTAAAGTGGT
TCCTGACAGGAGATGTCGCCACCATTAGTCCAGATGGATATATGAATATA
ACTGACCGGTATGATTGGAGGGAAGGAGGGGGAGGGGGGGGATGCAAGAA
AAGGTGAGGTTCGAAAGACATATGAGTGGGAGGAGAAAATCAAGGAATCG
TCAGGTCAAGGTTTGCGAATATCTTATACTTGAAGTTAGCTCACTACATA
TTCAAATGTTGTATCCTGTTATCGTGATATAGGAGCAAGGACGTGATCAA
GAGCGGTGGGGAATGGATCTCCTCCATCGAGCTCGAGAATGTCGCCATGA
GCCATCCCCAGGTATTTTATCTCTCCCTCCTTCCCTGTCTCTCACCTTTC
AGTGCGCGTTTCCTCCACGTTTATCTCGAGTTCATCTGATCCACACTAAC
CCCTACTCCTCCTTCCTCCCATTCCTTTCTCCCTTTATTTCCTCACAGGT
AGCCATGGCAGCCGTTATCGCAATGCCGCACCCTAAATGGGACGAACGCC
CACTCCTTATCGTCGTGCCCAAACCGGCACCTCCCTCGTCATCCTCGTCC
TCCTCCACCTCCAGCACCGCCACCACAAACTTCCCTTTTTCTTCCTCCCT
CGCTTCCTCCCCACCATTGACCAAGGTTTCCCTCCTCCAACACTTCGAAG
GGAAGGTAGCCAAGTGGTGGATTCCTGACGATGTGGTCCTTGTCGAGTCC
ATCCCTCTAGGTGCCACGGGGAAAGTGCTCAAGACCGAGCTCCGAAAGCG
TTTTGAAGGACACACGTAA back to topCoding sequence (CDS) from alignment at chr26:48828..52196+ >NO26G00150.1 ID=NO26G00150.1|Name=NO26G00150.1|organism=Nannochloropsis oceanica|type=CDS|length=1923bp|location=Sequence derived from alignment at chr26:48828..52196+ (Nannochloropsis oceanica) ATGCACCGTCATGTTTCCCGTCTTCTCCTGCCCTCTCGACACAGCAGTGC GTACCGCTATCGTCTTCGTTCTCGCGCCGCGTCCTACTCCTCAGCCTCGA CCGCGCCTTCAACCCCTGGCCTGATGATGAATTACCCTCTCCTTATCTCT TCCCTCTTGACCCACGCCGCAAAGCATCATCCGGACACGCCCATCGTCAG CCGTCGACATGAGGAGGCAGGACGTAAAGAAGCGAAGCTGCATCGATATA CGTATCTGGAGATGCACGCACGGAGCAAGCGCCTGGCGAATGTTCTGGAA GGGAGGTTGGGCGTCACGCAAGGAGACAGGGTGGCGACACTGGCTTTGAA CACGTACAGACACATGGAACTCTACTTTGCTGTCTCCGGGACCGGCGCCA TCCTCCACACTCTGAACCCTCGCCTCTTTCCCGAGACTTTGACATGGATC ATAAGCCACGCCCAGGACACCGTGGTGTTTTTCGATGCCTGCTTCTCTCC CCTCGTTGAGCGCCTGGTGTCGCACTGTCCGACCGTCAAGCACTGGGTCT GCCTGGTGGACGAAGACAGCATGCCCTCCCTCTCTCCCTCCCCCTCTCTC CCTCCTGGTGTGCTGCTGAATTATGAAGCACTCTTGAAGGAGGCGAGTGA GGAGTACGCCTGGCCTGTGTTTGACGAGACGGCGGCGTCCAGCTTGTGCT ACACGAGTGGAACGACGGGCCACCCAAAAGGAGTCCTGTATTCTCACCGT TCCACCATCCTTCACTCTTTCGCTGCTGCGCTTCCCGACTCTCTCAACCT GTCCGCCCGCGACGCCGTTTTGCCGGTGGTACCGCTCTTTCACGTCAATG CATGGGGCATCCCTTACTCCGCGGCTTTGGTAGGGTGCAAGTTGGTACTC CCCGGGCCTTCACTCGACGGAGAATCCCTCTATAATCTGATAGAGGAAGA GGAGGTCACGGTCTCCGCCGGCGTCCCCACGGTGTGGCTTGGCCTCTTGA ACTACATGAGCCAGAACAACAAAGACGGGTTCCAAGCCATGAAACGCACT GTCGTGGGAGGCGCTGCCTGCCCGCCTTCCATGCTGCGGGCCTTCGTCGA GGGCCACGGCGTGGACGTGCTGCACGCCTGGGGAATGACGGAGTTGTCGC CCCTCGGCACGGCGTGCACCCTCAAGGGCAAGCACCTCCCTCTTTCCTCC GACGAGAGATACGCTCTCCTCAACAAGCAAGGCAGAGCCATATACGGCGC CGACTTCAAAATCGTCGCTCCCTCGCACCCTCCCTCCCTTTCTCCTTCCC CTCCCCTCTTGAGGGAAGTCCCCTGGGATGGCATCTCTCAAGGCGAGCTG TGTGTGCGGGGAAATTGGGTGGTCTCAAAATACTACCAAGGAGGGGGGAA GGCAGGGAAGGAGGGAGAGGCCGAGGAAGGGTGTTTTTACAAGGACGAGG AAGGGCTAAAGTGGTTCCTGACAGGAGATGTCGCCACCATTAGTCCAGAT GGATATATGAATATAACTGACCGGAGCAAGGACGTGATCAAGAGCGGTGG GGAATGGATCTCCTCCATCGAGCTCGAGAATGTCGCCATGAGCCATCCCC AGGTAGCCATGGCAGCCGTTATCGCAATGCCGCACCCTAAATGGGACGAA CGCCCACTCCTTATCGTCGTGCCCAAACCGGCACCTCCCTCGTCATCCTC GTCCTCCTCCACCTCCAGCACCGCCACCACAAACTTCCCTTTTTCTTCCT CCCTCGCTTCCTCCCCACCATTGACCAAGGTTTCCCTCCTCCAACACTTC GAAGGGAAGGTAGCCAAGTGGTGGATTCCTGACGATGTGGTCCTTGTCGA GTCCATCCCTCTAGGTGCCACGGGGAAAGTGCTCAAGACCGAGCTCCGAA AGCGTTTTGAAGGACACACGTAA back to top
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