|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr26 | genome | chr26:46416..48560 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO26G00140.1 vs.
Match: CBN79281.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 205.3 bits (521), Expect = 4.100e-49 Identity = 154/420 (36.67%), Postives = 206/420 (49.05%), Query Frame = 0
Query: 55 YRALDEDVRDFWVPRE--VKRLRHPITALTFLRDYVQPSIPVIFSKGSGLLDQWQGVERWKEWEWVVGRVGEETIVSVNVTPDGRGDAILEMRKEIERKVEEEKRVERKTQNFKRTEGRKEGRPGSPSS-----PPSLPPRPPPHPRRVFIKPEERRMAFGAFVDILL-----HGEDE-----GGRESGREEGVFYLSQQNDNMRVDFPMFLSDGQGTREEGGEEGQVPAAGFPIARQVFGHAPDAINLWIGGRRSVSSVHKDPYENMYAVLKGEKHFTLFPPSDAASFSVAQDLLQATYHSSPSSRTLSVSIEDQGR------REDGGRIDWIDLEASREGGREGG--RALHPLEVWVKEGEVLYLPALWFHEVTQTCPTIAVNYWHDMAFLGPKYVYFNFMQRLG---RQRQRRREGG 447
+ L +D R FW V+RL F RDYV S PVI S G G G W + + GR E V+V+ TPDGRGD ++++ + + E + + T GR G GS S ++ VF+KPEERRM F AFV LL DE G G +GV YLS QND++R +FP + D + +AR+ FG+ PDA+NLWIG RS+S+VHKD YENMY V++GEKHFTL PPSD F Q+ Q Y S E +GR + G++ WI ++ + + R P+ V G++LYLP+LW+H V+Q T+AVNYWHDM F KYV++ F+Q L R+ RR GG
Sbjct: 5 FEQLQDDTRSFWQHPSSGVRRLDTMPPPADFFRDYVATSTPVILS-GGGCFKGGGGRSCWDDLASLAGRDSEGLEVTVDFTPDGRGDCVVDVADSM---LSELPTSDANAMHDSATGGRVAGAEGSRRSCGTGDAVNVGSAAAARTTAVFVKPEERRMKFEAFVSTLLTEAAARASDESSSTRGCTSGGAGKGVPYLSHQNDSLRQEFPGLMEDVEPF--------------LALAREAFGNEPDAVNLWIGDDRSLSAVHKDHYENMYCVVRGEKHFTLLPPSDVL-FLYEQEYPQGRYRQRRSVD----GGEGEGRGGEFEVEMEEGKVPWIPVDPACPDLEKYPLFRFASPVHCRVGPGDILYLPSLWYHRVSQRGITVAVNYWHDMQF-DHKYVHYRFLQTLAGKLREGVVRRPGG 400
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO26G00140.1 ID=NO26G00140.1|Name=NO26G00140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1380bp ATGCCTGAGAGGGGGACGAAGCTTGACAACGCCTTCAACCAGCGATTCAG CGGAGGAAACGACGATTTTGGAATGCACCACACGGACAATGGTGACCGAG ACGATGACCACCGGTACAAAGATGTCAAGGGAGAAAATGTCGATGACGAT GAGAATGCCCCATACCGAGCGCTCGACGAGGATGTTCGAGATTTTTGGGT CCCACGGGAGGTGAAGCGATTGAGACATCCCATCACGGCATTGACTTTCC TAAGAGACTACGTCCAGCCTTCCATTCCCGTCATTTTCTCAAAAGGGAGT GGGCTCCTCGACCAATGGCAGGGCGTGGAGAGGTGGAAGGAGTGGGAATG GGTGGTGGGAAGGGTAGGAGAGGAGACAATAGTCTCTGTCAACGTGACCC CTGATGGGAGAGGTGACGCCATTCTGGAGATGCGGAAGGAAATCGAGAGA AAGGTCGAAGAGGAGAAAAGGGTAGAGAGGAAAACTCAAAATTTCAAAAG GACGGAGGGAAGGAAGGAGGGGCGGCCTGGTTCTCCGTCCTCTCCTCCTT CCCTTCCTCCTCGTCCTCCCCCGCACCCTCGACGTGTCTTCATCAAGCCC GAAGAACGGCGAATGGCCTTCGGCGCTTTCGTCGACATCCTCCTCCACGG GGAAGATGAGGGCGGGAGAGAAAGCGGGAGGGAGGAAGGGGTGTTCTACC TCAGCCAACAGAACGACAACATGCGCGTCGACTTTCCTATGTTCCTCTCG GACGGCCAAGGCACGCGGGAGGAAGGGGGCGAGGAAGGGCAGGTTCCCGC TGCCGGCTTCCCAATCGCCCGCCAGGTGTTTGGTCATGCCCCGGACGCGA TTAATTTGTGGATCGGTGGCCGCAGGAGCGTCTCGTCGGTCCACAAGGAT CCTTACGAAAACATGTATGCCGTGCTCAAGGGGGAGAAGCATTTCACCCT CTTCCCTCCCTCTGACGCCGCCTCCTTTTCTGTTGCCCAGGATCTTCTTC AAGCCACTTATCACTCCTCTCCTTCCTCCCGCACTCTCTCCGTTTCGATC GAGGACCAGGGCAGGAGGGAGGATGGGGGTCGGATCGACTGGATCGACTT GGAGGCGTCGAGGGAGGGAGGGAGGGAAGGAGGGAGGGCGTTGCACCCCC TGGAGGTGTGGGTGAAGGAGGGGGAGGTGCTGTATTTACCTGCATTGTGG TTCCACGAGGTGACACAGACGTGTCCAACAATAGCCGTCAACTACTGGCA CGACATGGCGTTCCTAGGACCAAAGTATGTGTATTTTAACTTCATGCAGC GCCTCGGTAGGCAGCGACAAAGAAGGAGGGAGGGAGGGAGGGAAGGAGGG AAGGAGGGAGGGAAGGAGGGAGGGGAATAG back to topprotein sequence of NO26G00140.1 >NO26G00140.1-protein ID=NO26G00140.1-protein|Name=NO26G00140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=460bp MPERGTKLDNAFNQRFSGGNDDFGMHHTDNGDRDDDHRYKDVKGENVDDD ENAPYRALDEDVRDFWVPREVKRLRHPITALTFLRDYVQPSIPVIFSKGS GLLDQWQGVERWKEWEWVVGRVGEETIVSVNVTPDGRGDAILEMRKEIER KVEEEKRVERKTQNFKRTEGRKEGRPGSPSSPPSLPPRPPPHPRRVFIKP EERRMAFGAFVDILLHGEDEGGRESGREEGVFYLSQQNDNMRVDFPMFLS DGQGTREEGGEEGQVPAAGFPIARQVFGHAPDAINLWIGGRRSVSSVHKD PYENMYAVLKGEKHFTLFPPSDAASFSVAQDLLQATYHSSPSSRTLSVSI EDQGRREDGGRIDWIDLEASREGGREGGRALHPLEVWVKEGEVLYLPALW FHEVTQTCPTIAVNYWHDMAFLGPKYVYFNFMQRLGRQRQRRREGGREGG KEGGKEGGE* back to topmRNA from alignment at chr26:46416..48560- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO26G00140.1 ID=NO26G00140.1|Name=NO26G00140.1|organism=Nannochloropsis oceanica|type=mRNA|length=2145bp|location=Sequence derived from alignment at chr26:46416..48560- (Nannochloropsis oceanica) ATGCCTGAGAGGGGGACGAAGCTTGACAACGCCTTCAACCAGCGATTCAG
CGGAGGAAACGACGATTTTGGGTGAGGCCCCGCAGACAGGGAAATGTAAA
GAGCACCCATTACTGTCTACACCTAACGGAACGGAATCTCGTTGACAAGA
GACGTACAAGGAGAAATAGGAGGAGAAGGAGGAGGAGGAGGCCGAAATAA
TCTCCCTGCCCTCTCTCCACACCGCCCACAGAATGCACCACACGGACAAT
GGTGACCGAGACGATGACCACCGGTACAAAGATGTCAAGGGAGAAAATGT
CGATGACGATGAGAATGCCCCATACCGAGCGCTCGACGAGGATGTTCGAG
ATTTTTGGGTCCCACGGGAGGTGAAGCGATTGAGACATCCCATCACGGCA
TTGACTTTCCTAAGAGTAAGTATCATCCGGCAGGAGGTTATAAAATCAGA
GTAACAAGTCAATAATTATAAAATCTCATTCCCTCACACCCAAATGCGTT
CCTCCATGTGCCAAGGTGACTCACGACACACCACCCTTCCTCCCTCCTTC
TATCCTCTCTTTCCTCCAGGACTACGTCCAGCCTTCCATTCCCGTCATTT
TCTCAAAAGGGAGTGGGCTCCTCGACCAATGGCAGGGCGTGGAGAGGTGG
AAGGAGTGGGAATGGGTGGTGGGAAGGGTAGGAGAGGAGACAATAGTCTC
TGTCAACGTGACCCCTGATGGGAGAGGTGACGCCATTCTGGAGATGCGGA
AGGAAATCGAGAGAAAGGTCGAAGAGGAGAAAAGGGTAGAGAGGAAAACT
CAAAATTTCAAAAGGACGGAGGGAAGGAAGGAGGGGCGGCCTGGTTCTCC
GTCCTCTCCTCCTTCCCTTCCTCCTCGTCCTCCCCCGCACCCTCGACGTG
TCTTCATCAAGCCCGAAGAACGGCGAATGGCCTTCGGCGCTTTCGTCGAC
ATCCTCCTCCACGGGGAAGATGAGGGCGGGAGAGAAAGCGGGAGGGAGGA
AGGGGTGTTCTACCTCAGCCAACAGAACGACAACATGCGCGTCGACTTTC
CTATGTTCCTCTCGGACGGCCAAGGCACGCGGGAGGAAGGGGGCGAGGAA
GGGCAGGTTCCCGCTGCCGGCTTCCCAATCGCCCGCCAGGTGTTTGGTCA
TGCCCCGGACGCGATTAATTTGTGGATCGGTGGCCGCAGGAGCGTCTCGT
CGGTCCACAAGGATCCTTACGAAAACATGTATGCCGTGCTCAAGGGGGAG
AAGGTAGGCGGTAGGGGGCTTCCCTCCCTCCCTGCCCTCCCTCCCTCCCT
CCCTCCCTTTCGTCTACGATTTCCTCGTTGTTTTCTCATTCCCATTAGCA
TGTCACTCCCTTTCCCCCCTCCGACATGTCCTCTCTCTGCCACCTCTCCC
GGGTGCTTCCACAAGCTTCTGACCCCAGCTCACCCCTCCCTACTTCCCTC
CCTCCCTCCCACCCTCCTTCAGCATTTCACCCTCTTCCCTCCCTCTGACG
CCGCCTCCTTTTCTGTTGCCCAGGATCTTCTTCAAGCCACTTATCACTCC
TCTCCTTCCTCCCGCACTCTCTCCGTTTCGATCGAGGACCAGGGCAGGAG
GGAGGATGGGGGTCGGATCGACTGGATCGACTTGGAGGCGTCGAGGGAGG
GAGGGAGGGAAGGAGGGAGGGCGTTGCACCCCCTGGAGGTGTGGGTGAAG
GAGGGGGAGGTGCTGTATTTACCTGCATTGTGGTTCCACGAGGTGACACA
GACGTGTCCAACAATAGCCGGTACGGAGGGAGGGAGGGAGGGGGAGAGGG
AAGGGGGGGGACCTCAATAGAAGCAAATAGAGCATCTTCTAGCCTCCCTC
TACCATCTCTTTTTCTTTCCCTCCCTCCCCCTTCCCTCTCCCCTCACCCC
CTCCTTCCAGTCAACTACTGACACGACATGGCGTTCCTAGGACATGAGCG
TGTGTATTTTAATCATCCCTATCTCTTCCCTTCCCTCACCCCCTCCTTCC
AGTCAACTACTGGCACGACATGGCGTTCCTAGGACCAAAGTATGTGTATT
TTAACTTCATGCAGCGCCTCGGTAGGCAGCGACAAAGAAGGAGGGAGGGA
GGGAGGGAAGGAGGGAAGGAGGGAGGGAAGGAGGGAGGGGAATAG back to topCoding sequence (CDS) from alignment at chr26:46416..48560- >NO26G00140.1 ID=NO26G00140.1|Name=NO26G00140.1|organism=Nannochloropsis oceanica|type=CDS|length=1380bp|location=Sequence derived from alignment at chr26:46416..48560- (Nannochloropsis oceanica) ATGCCTGAGAGGGGGACGAAGCTTGACAACGCCTTCAACCAGCGATTCAG CGGAGGAAACGACGATTTTGGAATGCACCACACGGACAATGGTGACCGAG ACGATGACCACCGGTACAAAGATGTCAAGGGAGAAAATGTCGATGACGAT GAGAATGCCCCATACCGAGCGCTCGACGAGGATGTTCGAGATTTTTGGGT CCCACGGGAGGTGAAGCGATTGAGACATCCCATCACGGCATTGACTTTCC TAAGAGACTACGTCCAGCCTTCCATTCCCGTCATTTTCTCAAAAGGGAGT GGGCTCCTCGACCAATGGCAGGGCGTGGAGAGGTGGAAGGAGTGGGAATG GGTGGTGGGAAGGGTAGGAGAGGAGACAATAGTCTCTGTCAACGTGACCC CTGATGGGAGAGGTGACGCCATTCTGGAGATGCGGAAGGAAATCGAGAGA AAGGTCGAAGAGGAGAAAAGGGTAGAGAGGAAAACTCAAAATTTCAAAAG GACGGAGGGAAGGAAGGAGGGGCGGCCTGGTTCTCCGTCCTCTCCTCCTT CCCTTCCTCCTCGTCCTCCCCCGCACCCTCGACGTGTCTTCATCAAGCCC GAAGAACGGCGAATGGCCTTCGGCGCTTTCGTCGACATCCTCCTCCACGG GGAAGATGAGGGCGGGAGAGAAAGCGGGAGGGAGGAAGGGGTGTTCTACC TCAGCCAACAGAACGACAACATGCGCGTCGACTTTCCTATGTTCCTCTCG GACGGCCAAGGCACGCGGGAGGAAGGGGGCGAGGAAGGGCAGGTTCCCGC TGCCGGCTTCCCAATCGCCCGCCAGGTGTTTGGTCATGCCCCGGACGCGA TTAATTTGTGGATCGGTGGCCGCAGGAGCGTCTCGTCGGTCCACAAGGAT CCTTACGAAAACATGTATGCCGTGCTCAAGGGGGAGAAGCATTTCACCCT CTTCCCTCCCTCTGACGCCGCCTCCTTTTCTGTTGCCCAGGATCTTCTTC AAGCCACTTATCACTCCTCTCCTTCCTCCCGCACTCTCTCCGTTTCGATC GAGGACCAGGGCAGGAGGGAGGATGGGGGTCGGATCGACTGGATCGACTT GGAGGCGTCGAGGGAGGGAGGGAGGGAAGGAGGGAGGGCGTTGCACCCCC TGGAGGTGTGGGTGAAGGAGGGGGAGGTGCTGTATTTACCTGCATTGTGG TTCCACGAGGTGACACAGACGTGTCCAACAATAGCCGTCAACTACTGGCA CGACATGGCGTTCCTAGGACCAAAGTATGTGTATTTTAACTTCATGCAGC GCCTCGGTAGGCAGCGACAAAGAAGGAGGGAGGGAGGGAGGGAAGGAGGG AAGGAGGGAGGGAAGGAGGGAGGGGAATAG back to top
|