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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr26 | genome | chr26:27708..31439 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO26G00100.1 vs.
Match: EWM23043.1 (dna cross-link repair 1a protein [Nannochloropsis gaditana]) HSP 1 Score: 340.1 bits (871), Expect = 1.400e-89 Identity = 157/205 (76.59%), Postives = 178/205 (86.83%), Query Frame = 0
Query: 1 MASQVERIKWVEGTSFLVDGFGFTSPKCSAYFLTHYHSDHYWGLRPSFSKGTIFCSEITGALLIGKLGIKPQFVHMLPMERPTTIEGVEVTLLDANHCPGAVMLVFHLKRANKTILHTGDFRASDGLRARMTAWLRARGRKIDTVYLDTTYCNHKYTFPSQASVLASLSLLARREKEAAPSTLFYVGTYSIGKERAVRAVAEGIG 206
MASQVERIKW+EGTSFLVDGF F SPKCSAYFLTH+HSDHYWGLRPSF GTI+CS++TGALL+GKLG+KPQFVH LP+E+PTTI+GVEVTLLDANHCPGAVML+FH K+ TILHTGDFRAS+ L R +W+R R ++ +YLDTTYCN KYTFPSQ SVLA+LS +A REK PST+FYVGTYSIGKERAVRAVA GIG
Sbjct: 1 MASQVERIKWIEGTSFLVDGFNFLSPKCSAYFLTHFHSDHYWGLRPSFCHGTIYCSDVTGALLVGKLGVKPQFVHTLPLEKPTTIQGVEVTLLDANHCPGAVMLLFHNKKTKSTILHTGDFRASEALTERTASWIRDRDLRVRILYLDTTYCNAKYTFPSQPSVLAALSRIAEREKAERPSTVFYVGTYSIGKERAVRAVAAGIG 205
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO26G00100.1 ID=NO26G00100.1|Name=NO26G00100.1|organism=Nannochloropsis oceanica|type=mRNA|length=2583bp GCGGTTTCCTTCGTGTGTCTGTTGCATGTGAGGGACGAGGGGGAGGAAGC GAGGCGTTCGTTACTTAGGGCGAGATACATGAATGGTGAGGGGCACCTCA TAGTCGCGAGTGTGCAGACAAGGAAATCGCGCAGGCTCCCTCGGGCACAT TTAAGCCAAAGGCCTGGGAGGAGGCCGCGGAGGAGGAAGAGGAGAAGGAG GAGGCCCAGCACGAAAAGAAGCATGCGCCTATCTCTTCCGTGAGAACAAA AGCCTCGCCATCTCGTCTTCCAGCCCTCCCTTGTCTCGAGGAGCCAAAAC TGTAAATGTGGCTGTACATCCAGGCCGCTTTGTTGCTGTTGGAGGGAGAG TGAGGAGTGGTTCGGATGTGGACAGGCCAGGCGAAGGGAATCACAAGGTG TATCTACCGAACTGGACAGAAGAAGCTAGCGATGGAGGACCCGGGAATGA GTAATGAGGCGAACGCAGACACAGAGTGCTGCAGCGGGGCAGTGGGTTTG AGCGATGCCTTGCCTTGACCAGCTCCAGGGTCAAAGTGTATGAGGCGAAG TTGTATTTACACAATTCTTTCATATCTCGAAACCTAGATACAGGGCTACG TGGAGCATTTGTATTTGTATTGTTATTATTACCGGGCAAGCCGCCGGGGC GAACGAGGATATCGTGCGGAGGGACAGGGGCGGTGTAGGAGAAGGCGTGT ACCTGTGGGCTGGCTAGCTGTACAAGGGCATGGCGTCGCAGGTGGAGCGA ATCAAGTGGGTCGAAGGCACCTCCTTCCTCGTGGACGGCTTTGGGTTTAC CTCGCCCAAATGCTCTGCCTATTTCTTGACGCACTACCACAGTGATCACT ACTGGGGCCTGAGACCGTCTTTCAGCAAAGGCACTATCTTCTGCAGCGAG ATCACGGGCGCCCTTCTTATCGGCAAGCTAGGAATCAAGCCCCAATTTGT ACACATGCTGCCCATGGAGAGACCCACCACCATAGAGGGCGTGGAAGTCA CTCTGCTAGATGCAAACCATTGCCCTGGCGCCGTCATGCTGGTCTTTCAC CTCAAGCGTGCGAACAAGACGATCCTCCACACGGGCGATTTCCGTGCTAG CGATGGATTGAGGGCGAGGATGACGGCCTGGCTGCGGGCGAGGGGGAGGA AGATCGACACTGTTTACCTGGACACCACCTACTGCAATCACAAGTACACC TTTCCTTCCCAGGCCTCCGTCCTCGCCTCGCTATCTCTCCTGGCCCGGCG GGAGAAGGAGGCCGCTCCCTCCACCCTCTTCTACGTGGGCACCTACAGCA TCGGCAAGGAGCGGGCCGTCCGCGCCGTGGCAGAAGGGATAGGCAGCAAG GTATACGCGGACAAGCACAAGGAGCGGACCTTACGCCTCGCAGGGGAGTG GGACGACGGCCTCTATTCCTCCGATGCTAGGGAATGCTCCGTCAGGATGG CCTGGCTGGGGAGGCTGAGGGCCGAGAAAATGAGGGCGGGGGGGAGGAAG GGGGGCGGAAGGCTGAAAGGGCAGGAGGAGCTGCAACAGGAGCAACGGAA GCAACAGGATCGAGGGAGGACGGAGGAAAAGGAGGAGGAAGGGGGGAGAA AGGTGTTGGGGCGGGAACAGGATGGAGAGAGAACGGATAAGGAGGGGGAG GAGGAAGAAGGGAAAGAAGGGAGAGAGGGAGGGGCAAAAACGAGTACACT GCAGCAGTCGCTTGGAATGGAGGGGGAAAATGAGAGGGTTGAGGGGTATG CGTGGGAGGAGGAGGAGGAAGAAGAGGAGGAGGGGGAGGAGGGGAAGGAG GGGGGGGAGGGGGGACAAGACGACGACGACGGGGAGGAGGCAGTCAAGCA ACTTGAAAATGAGGGGGAAGAGGAGGAGGAGGAGGAGGAGGAGGTAGGCG CCCGAAGGCCAGTCGTTGGCTTTCGTCCCACGGGCTGGAGCTTCACCCGG AACAAGAAGAAGAAGGGCAAGGACGACTTCCCCTCCTCCTTTACCTCCCT CCCTGCGCCCCCCTCCTCCTACACCCCCTGGATCAACGAGGAGGAAGGCG CCAAGCTGTACTTTGTCCCCTACTCCGAGCACTCTTCTTACACTGAATTG AGGGCATTTATCAGAGCGATACGGCCCAGGAAAATCATACCCACCGTAAG TGCAGGCGACGAGAAAGCCGTGGAGCGGCAACTGAAACATTTCCTCCCTG ACATGGACCTATCCCAAGATCGGGCTCGTCTCGATAGTTACTTCATGGGG GGAGAAAGAGGGGGAGGAAGAGAGGGAGGGAGGGTGGGTGGGAGAGAGGG AGAGGGAGGAGCAAGAGGGAGAGGACGAGGGATGGATTTGGGTGAAGTGG ATGTGAAAGAGCAGGTGCAGCGATGGGCGGAGCTAGTGGGGCGCGATGGC AAAGAGGAGGGAGGAGGAAGAGAAGTGGAAATGAAGCGGACAAAGGAGGA GAAGAGAATGAAGAGAAAAGCGGTTGTGGAGGTGGTGCTAATCGATGATG ACGATGATTGAGGAGTTAGATAAGAGGACGGATGTGGATATGTACAGAAA ATAGAAAATGAATAACCTTCCCTGCTGGGCCCA back to topprotein sequence of NO26G00100.1 >NO26G00100.1-protein ID=NO26G00100.1-protein|Name=NO26G00100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=594bp MASQVERIKWVEGTSFLVDGFGFTSPKCSAYFLTHYHSDHYWGLRPSFSK GTIFCSEITGALLIGKLGIKPQFVHMLPMERPTTIEGVEVTLLDANHCPG AVMLVFHLKRANKTILHTGDFRASDGLRARMTAWLRARGRKIDTVYLDTT YCNHKYTFPSQASVLASLSLLARREKEAAPSTLFYVGTYSIGKERAVRAV AEGIGSKVYADKHKERTLRLAGEWDDGLYSSDARECSVRMAWLGRLRAEK MRAGGRKGGGRLKGQEELQQEQRKQQDRGRTEEKEEEGGRKVLGREQDGE RTDKEGEEEEGKEGREGGAKTSTLQQSLGMEGENERVEGYAWEEEEEEEE EGEEGKEGGEGGQDDDDGEEAVKQLENEGEEEEEEEEEVGARRPVVGFRP TGWSFTRNKKKKGKDDFPSSFTSLPAPPSSYTPWINEEEGAKLYFVPYSE HSSYTELRAFIRAIRPRKIIPTVSAGDEKAVERQLKHFLPDMDLSQDRAR LDSYFMGGERGGGREGGRVGGREGEGGARGRGRGMDLGEVDVKEQVQRWA ELVGRDGKEEGGGREVEMKRTKEEKRMKRKAVVEVVLIDDDDD* back to topmRNA from alignment at chr26:27708..31439- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO26G00100.1 ID=NO26G00100.1|Name=NO26G00100.1|organism=Nannochloropsis oceanica|type=mRNA|length=3732bp|location=Sequence derived from alignment at chr26:27708..31439- (Nannochloropsis oceanica) GCGGTTTCCTTCGTGTGTCTGTTGCATGTGAGGGACGAGGGGGAGGAAGC
GAGGCGTTCGTTACTTAGGGCGAGATACATGAATGGTGAGGGGCACCTCA
TAGTCGCGAGTGTGCAGACAAGGAAATCGCGCAGGCTCCCTCGGGCACAT
TTAAGCCAAAGGCCTGGGAGGAGGCCGCGGAGGAGGAAGAGGAGAAGGAG
GAGGCCCAGCACGAAAAGAAGCATGCGCCTATCTCTTCCGTGAGAACAAA
AGCCTCGCCATCTCGTCTTCCAGCCCTCCCTTGTCTCGAGGAGCCAAAAC
TGTAAATGTGGCTGTACATCCAGGCCGCTTTGTTGCTGTTGGAGGGAGAG
TGAGGAGTGGTTCGGATGTGGACAGGCCAGGCGAAGGGAATCACAAGGTG
TATCTACCGAACTGGACAGAAGAAGCTAGCGATGGAGGACCCGGGAATGA
GTAATGAGGCGAACGCAGACACAGAGTGCTGCAGCGGGGCAGTGGGTTTG
AGCGATGCCTTGCCTTGACCAGCTCCAGGGTCAAAGTGTATGAGGCGAAG
TTGTATTTACACAATTCTTTCATATCTCGAAACCTAGATACAGGGCTACG
TGGAGCATTTGTATTTGTATTGTTATTATTACCGGGCAAGCCGCCGGGGC
GAACGAGGATATCGTGCGGAGGGACAGGGGCGGTGTAGGAGAAGGCGTGT
ACCTGTGGGCTGGCTAGCTGTACAAGGGCATGGCGTCGCAGGTGGAGCGA
ATCAAGTGGGTCGAAGTACGTTGTTCCCGTGGTGATGGGTGGATAGGGTG
GAGGGTTGATGAGAGGCGTGCCCAACTTTCCGTCTCTTCCTTGCCCTGTG
GCGTCACCTACCTCCTGCTTCCGATTATAGTGGAAAATGTGCCTGTCATA
CCTCAATCCTTCCCGCCCTCTCTTCATTCCCTGACTGCTATTAGGGCACC
TCCTTCCTCGTGGACGGCTTTGGGTTTACCTCGCCCAAATGCTCTGCCTA
TTTCTTGACGCACTACCACAGTGATCACTACTGGGGCCTGAGACCGTCTT
TCAGCAAAGGTCAGGAGAGAAAGGGACGAAGAGGAGACTGAGACGGGTGG
ATGCGAGTGTTTCTACCTACGAGATCGAGTGATACATGCCTCCTTTCGCG
TCGCATTGCCTTCACACCCAGCCCTCCCTCCCTCACTCCCTCACCCTCCT
CCTTTCCTTCCTTCCTCAACCTTTCCTCCGCAGGCACTATCTTCTGCAGC
GAGATCACGGGCGCCCTTCTTATCGGCAAGCTAGGAATCAAGCCCCAATT
TGTACACATGCTGCCCATGGAGAGACCCACCACCATAGAGGTACGACCTC
CCTCTCTTCCAACCTCACCTGGTGGGTTGAAGCCTTCCTCCCTCCCTCCC
TTCTCCCGCCTTCCACTTTCTAGGGCGTGGAAGTCACTCTGCTAGATGCA
AACCATTGCCCTGGCGCCGTCATGCTGGTCTTTCACCTCAAGCGTGGTAG
GGAGGGAGGGAGGAAGGGAGGGAAGGAGGGGCAAAGGAAGTGTTTTCACA
CCCTCATGCACATCCACAGCCACACCCATCCCTCTTTTCCTCCCTTTCCC
CCCCCTTCTTTTTCTCTCCCCCCCCCTCCAGCGAACAAGACGATCCTCCA
CACGGGCGATTTCCGTGCTAGCGATGGATTGAGGGCGAGGATGACGGCCT
GGCTGCGGGCGAGGGGGAGGAAGATCGACACTGTTTACCTGGACACCACC
TACTGCAATCACAAGGCATGCCCTCCCTCTCTCTCCCTCCCTTTCTTTCA
CCTTCTTTTCCATTTCCACTGAATGACGGTATCAAGCCAACTCACCATCT
CTCCCTCCCTCTCTCCCTCCCTTCCTCCTTCCAGTACACCTTTCCTTCCC
AGGCCTCCGTCCTCGCCTCGCTATCTCTCCTGGCCCGGCGGGAGAAGGAG
GCCGCTCCCTCCACCCTCTTCTACGTGGGCACCTACAGCATCGGCAAGGA
GCGGGCCGTCCGCGCCGTGGCAGAAGGGATAGGTTGGGAAGGAGGGATGG
AGGGAGGGAGGGAGGGAGGGAATGTCCTTCATTGTGTCTTTCCCTCTTCA
CACTTCCACCTTATTCCCTCGCCATCTACCTCTCTCTCTCCCTCCCTCCC
CTCTTCCCTTTCTCCCTCCGCCCGTGGCTTTCTCTTGCCCAGGCAGCAAG
GTATACGCGGACAAGCACAAGGAGCGGACCTTACGCCTCGCAGGGGAGTG
GGACGACGGCCTCTATTCCTCCGATGCTAGGGAATGCTCCGTCAGGATGG
CCTGGCTGGGGAGGCTGAGGGCCGAGAAAATGAGGGCGGGGGGGAGGAAG
GGGGGCGGAAGGCTGAAAGGGCAGGAGGAGCTGCAACAGGAGCAACGGAA
GCAACAGGATCGAGGGAGGACGGAGGAAAAGGAGGAGGAAGGGGGGAGAA
AGGTGTTGGGGCGGGAACAGGATGGAGAGAGAACGGATAAGGAGGGGGAG
GAGGAAGAAGGGAAAGAAGGGAGAGAGGGAGGGGCAAAAACGAGTACACT
GCAGCAGTCGCTTGGAATGGAGGGGGAAAATGAGAGGGTTGAGGGGTATG
CGTGGGAGGAGGAGGAGGAAGAAGAGGAGGAGGGGGAGGAGGGGAAGGAG
GGGGGGGAGGGGGGACAAGACGACGACGACGGGGAGGAGGCAGTCAAGCA
ACTTGAAAATGAGGGGGAAGAGGAGGAGGAGGAGGAGGAGGAGGTAGGCG
CCCGAAGGCCAGTCGTTGGCTTTCGTCCCACGGGTGAGAGTGAGGAGGAG
GAGCAGCCGCGGCAGCAAGTCTACCTCATGGTCTTTAGATTTCTAACCCA
CTTCCCTCCCTCTCTCCCTCCCTCTCTCCTCCCCTCTCTCCCTCTATCAG
GCTGGAGCTTCACCCGGAACAAGAAGAAGAAGGGCAAGGACGACTTCCCC
TCCTCCTTTACCTCCCTCCCTGCGCCCCCCTCCTCCTACACCCCCTGGAT
CAACGAGGAGGAAGGCGCCAAGCTGTACTTTGTCCCCTACTCCGAGCACT
CTTCTTACACTGAATTGAGGGCATTTATCAGAGCGATACGGCCCAGGTCA
GTTTTGGACCTCGTATTATTCCTTCTCTTCCTCCTTCTCTCCCTCCTTTC
GCCCCTCCTCTTCTCCCTCAAAAACACATCCACCTGCCGATGAAACTTTA
GAATAACGGTAGGTGAATAATCCACTTTTAAACCCTTTCTACCCCTTGCC
TCCTTCCTTTTCTCTCTTCCTTTCGCAGGAAAATCATACCCACCGTAAGT
GCAGGCGACGAGAAAGCCGTGGAGCGGCAACTGAAACATTTCCTCCCTGA
CATGGACCTATCCCAAGATCGGGCTCGTCTCGATAGTTACTTCATGGGGG
GAGAAAGAGGGGGAGGAAGAGAGGGAGGGAGGGTGGGTGGGAGAGAGGGA
GAGGGAGGAGCAAGAGGGAGAGGACGAGGGATGGATTTGGGTGAAGTGGA
TGTGAAAGAGCAGGTGCAGCGATGGGCGGAGCTAGTGGGGCGCGATGGCA
AAGAGGAGGGAGGAGGAAGAGAAGTGGAAATGAAGCGGACAAAGGAGGAG
AAGAGAATGAAGAGAAAAGCGGTTGTGGAGGTGGTGCTAATCGATGATGA
CGATGATTGAGGAGTTAGATAAGAGGACGGATGTGGATATGTACAGAAAA
TAGAAAATGAATAACCTTCCCTGCTGGGCCCA back to topCoding sequence (CDS) from alignment at chr26:27708..31439- >NO26G00100.1 ID=NO26G00100.1|Name=NO26G00100.1|organism=Nannochloropsis oceanica|type=CDS|length=1782bp|location=Sequence derived from alignment at chr26:27708..31439- (Nannochloropsis oceanica) ATGGCGTCGCAGGTGGAGCGAATCAAGTGGGTCGAAGGCACCTCCTTCCT CGTGGACGGCTTTGGGTTTACCTCGCCCAAATGCTCTGCCTATTTCTTGA CGCACTACCACAGTGATCACTACTGGGGCCTGAGACCGTCTTTCAGCAAA GGCACTATCTTCTGCAGCGAGATCACGGGCGCCCTTCTTATCGGCAAGCT AGGAATCAAGCCCCAATTTGTACACATGCTGCCCATGGAGAGACCCACCA CCATAGAGGGCGTGGAAGTCACTCTGCTAGATGCAAACCATTGCCCTGGC GCCGTCATGCTGGTCTTTCACCTCAAGCGTGCGAACAAGACGATCCTCCA CACGGGCGATTTCCGTGCTAGCGATGGATTGAGGGCGAGGATGACGGCCT GGCTGCGGGCGAGGGGGAGGAAGATCGACACTGTTTACCTGGACACCACC TACTGCAATCACAAGTACACCTTTCCTTCCCAGGCCTCCGTCCTCGCCTC GCTATCTCTCCTGGCCCGGCGGGAGAAGGAGGCCGCTCCCTCCACCCTCT TCTACGTGGGCACCTACAGCATCGGCAAGGAGCGGGCCGTCCGCGCCGTG GCAGAAGGGATAGGCAGCAAGGTATACGCGGACAAGCACAAGGAGCGGAC CTTACGCCTCGCAGGGGAGTGGGACGACGGCCTCTATTCCTCCGATGCTA GGGAATGCTCCGTCAGGATGGCCTGGCTGGGGAGGCTGAGGGCCGAGAAA ATGAGGGCGGGGGGGAGGAAGGGGGGCGGAAGGCTGAAAGGGCAGGAGGA GCTGCAACAGGAGCAACGGAAGCAACAGGATCGAGGGAGGACGGAGGAAA AGGAGGAGGAAGGGGGGAGAAAGGTGTTGGGGCGGGAACAGGATGGAGAG AGAACGGATAAGGAGGGGGAGGAGGAAGAAGGGAAAGAAGGGAGAGAGGG AGGGGCAAAAACGAGTACACTGCAGCAGTCGCTTGGAATGGAGGGGGAAA ATGAGAGGGTTGAGGGGTATGCGTGGGAGGAGGAGGAGGAAGAAGAGGAG GAGGGGGAGGAGGGGAAGGAGGGGGGGGAGGGGGGACAAGACGACGACGA CGGGGAGGAGGCAGTCAAGCAACTTGAAAATGAGGGGGAAGAGGAGGAGG AGGAGGAGGAGGAGGTAGGCGCCCGAAGGCCAGTCGTTGGCTTTCGTCCC ACGGGCTGGAGCTTCACCCGGAACAAGAAGAAGAAGGGCAAGGACGACTT CCCCTCCTCCTTTACCTCCCTCCCTGCGCCCCCCTCCTCCTACACCCCCT GGATCAACGAGGAGGAAGGCGCCAAGCTGTACTTTGTCCCCTACTCCGAG CACTCTTCTTACACTGAATTGAGGGCATTTATCAGAGCGATACGGCCCAG GAAAATCATACCCACCGTAAGTGCAGGCGACGAGAAAGCCGTGGAGCGGC AACTGAAACATTTCCTCCCTGACATGGACCTATCCCAAGATCGGGCTCGT CTCGATAGTTACTTCATGGGGGGAGAAAGAGGGGGAGGAAGAGAGGGAGG GAGGGTGGGTGGGAGAGAGGGAGAGGGAGGAGCAAGAGGGAGAGGACGAG GGATGGATTTGGGTGAAGTGGATGTGAAAGAGCAGGTGCAGCGATGGGCG GAGCTAGTGGGGCGCGATGGCAAAGAGGAGGGAGGAGGAAGAGAAGTGGA AATGAAGCGGACAAAGGAGGAGAAGAGAATGAAGAGAAAAGCGGTTGTGG AGGTGGTGCTAATCGATGATGACGATGATTGA back to top
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